mRNA_H-paniculata_contig16046.3508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16046.3508.1
Unique NamemRNA_H-paniculata_contig16046.3508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16046.3508.1 vs. uniprot
Match: A0A182GB28_AEDAL (CCHC-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GB28_AEDAL)

HSP 1 Score: 57.4 bits (137), Expect = 5.470e-7
Identity = 40/153 (26.14%), Postives = 75/153 (49.02%), Query Frame = 1 
Query:    1 HGQTAWTAMGEKYMNSPMQRRRLLVRQLDSTRMILNQDSDEYLIEIFHLRDELEYTGENFSEACITDIIVEGLTDDYDQMNFAAER--DPDFSLKDIETTMRNMYANRIARGQISSSRTKGLESGMMASSSAFKGICNYCQKPGHIKSECRKL 453
            H + A+ A+   +  +    R  L+++L ST +    D +++L+EI  L D L   G    +     +++  L   +D +  A +   D D S+  +++ + + Y  R+ R   +S   K ++S   +  S  + +C++C KPGHIK  CRK 
Sbjct:   78 HARDAFNALKAYHQKTSRSVRVSLLKKLCSTNLSEQGDLEKHLLEIDDLFDRLSAAGTELDKDTQICLLLRSLPPSFDGLVTALDSRSDDDISIDVVKSKLADEYHRRLERDASTSKVEKAMKSVGNSQRSDVR-VCHFCNKPGHIKRNCRKF 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16046.3508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A182GB28_AEDAL5.470e-726.14CCHC-type domain-containing protein n=1 Tax=Aedes ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16046contigH-paniculata_contig16046:2687..3148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929283.5002093-CDS-H-paniculata_contig16046:2686..31241622929283.5002093-CDS-H-paniculata_contig16046:2686..3124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16046 2687..3124 -
1691480800.509865-CDS-H-paniculata_contig16046:2686..31241691480800.509865-CDS-H-paniculata_contig16046:2686..3124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16046 2687..3124 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929283.518397-UTR-H-paniculata_contig16046:3124..31481622929283.518397-UTR-H-paniculata_contig16046:3124..3148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16046 3125..3148 -
1691480800.5226195-UTR-H-paniculata_contig16046:3124..31481691480800.5226195-UTR-H-paniculata_contig16046:3124..3148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16046 3125..3148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16046.3508.1prot_H-paniculata_contig16046.3508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16046 2687..3124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16046.3508.1

>prot_H-paniculata_contig16046.3508.1 ID=prot_H-paniculata_contig16046.3508.1|Name=mRNA_H-paniculata_contig16046.3508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MGEKYMNSPMQRRRLLVRQLDSTRMILNQDSDEYLIEIFHLRDELEYTGE
NFSEACITDIIVEGLTDDYDQMNFAAERDPDFSLKDIETTMRNMYANRIA
RGQISSSRTKGLESGMMASSSAFKGICNYCQKPGHIKSECRKLKW*
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mRNA from alignment at H-paniculata_contig16046:2687..3148-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16046.3508.1 ID=mRNA_H-paniculata_contig16046.3508.1|Name=mRNA_H-paniculata_contig16046.3508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at H-paniculata_contig16046:2687..3148- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGTCAGACGGCCTGGACAGCGATGGGCGAGAAATATATGAACTCGCC
CATGCAGCGCCGCCGTCTACTTGTGCGCCAGCTGGACAGCACGAGGATGA
TACTTAATCAAGACTCTGATGAGTACCTCATCGAGATATTTCATCTGCGC
GACGAGCTCGAGTATACCGGGGAAAATTTCTCGGAAGCATGCATCACGGA
TATCATTGTTGAAGGGCTCACAGACGACTACGATCAGATGAATTTCGCCG
CCGAGAGGGACCCCGATTTTTCCCTGAAAGACATCGAAACCACGATGAGA
AACATGTACGCCAACCGCATTGCGCGTGGTCAAATCTCATCCTCACGCAC
GAAGGGTCTTGAGTCAGGCATGATGGCCTCGTCGTCGGCTTTCAAAGGCA
TCTGTAATTACTGCCAAAAACCTGGACATATCAAGAGCGAGTGTAGAAAG
CTAAAGTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16046:2687..3148-

>mRNA_H-paniculata_contig16046.3508.1 ID=mRNA_H-paniculata_contig16046.3508.1|Name=mRNA_H-paniculata_contig16046.3508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig16046:2687..3148- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGAGAAATATATGAACTCGCCCATGCAGCGCCGCCGTCTACTTGT
GCGCCAGCTGGACAGCACGAGGATGATACTTAATCAAGACTCTGATGAGT
ACCTCATCGAGATATTTCATCTGCGCGACGAGCTCGAGTATACCGGGGAA
AATTTCTCGGAAGCATGCATCACGGATATCATTGTTGAAGGGCTCACAGA
CGACTACGATCAGATGAATTTCGCCGCCGAGAGGGACCCCGATTTTTCCC
TGAAAGACATCGAAACCACGATGAGAAACATGTACGCCAACCGCATTGCG
CGTGGTCAAATCTCATCCTCACGCACGAAGGGTCTTGAGTCAGGCATGAT
GGCCTCGTCGTCGGCTTTCAAAGGCATCTGTAATTACTGCCAAAAACCTG
GACATATCAAGAGCGAGTGTAGAAAGCTAAAGTGGTGAATGGGCGAGAAA
TATATGAACTCGCCCATGCAGCGCCGCCGTCTACTTGTGCGCCAGCTGGA
CAGCACGAGGATGATACTTAATCAAGACTCTGATGAGTACCTCATCGAGA
TATTTCATCTGCGCGACGAGCTCGAGTATACCGGGGAAAATTTCTCGGAA
GCATGCATCACGGATATCATTGTTGAAGGGCTCACAGACGACTACGATCA
GATGAATTTCGCCGCCGAGAGGGACCCCGATTTTTCCCTGAAAGACATCG
AAACCACGATGAGAAACATGTACGCCAACCGCATTGCGCGTGGTCAAATC
TCATCCTCACGCACGAAGGGTCTTGAGTCAGGCATGATGGCCTCGTCGTC
GGCTTTCAAAGGCATCTGTAATTACTGCCAAAAACCTGGACATATCAAGA
GCGAGTGTAGAAAGCTAAAGTGGTGA
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