mRNA_H-paniculata_contig1604.3506.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1604.3506.1
Unique NamemRNA_H-paniculata_contig1604.3506.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: A0A6H5K6C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.520e-18
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYVRGGETG 174
            +QITVKNIH+RYEDELSL+     VPRPL+AG+TL QLVVQTVD  W PTYV+G   G
Sbjct:  161 VQITVKNIHIRYEDELSLDDGTGTVPRPLSAGITLRQLVVQTVDEQWTPTYVQGAGGG 218
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 6.560e-18
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYVRGGETG 174
            +QITVKNIH+RYEDELSL+     VPRPL+AG+TL QLVVQTVD  W PTYV+G   G
Sbjct:  192 VQITVKNIHIRYEDELSLDDGTGTVPRPLSAGITLRQLVVQTVDEQWTPTYVQGAGGG 249
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: UPI001C7C5F19 (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7C5F19)

HSP 1 Score: 57.0 bits (136), Expect = 5.220e-8
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYV 156
            +QITVKNIH+RYED+LS+ G       P AAGVTL      +VD  WRP ++
Sbjct:  154 IQITVKNIHIRYEDKLSVPG------HPFAAGVTLAGFTAVSVDRDWRPAFI 199
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: A0A0P1BCL7_9BASI (Vacuolar protein sorting-associated protein n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A0P1BCL7_9BASI)

HSP 1 Score: 57.0 bits (136), Expect = 5.220e-8
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYVRGGETG 174
            LQITV+NIH+RYED+LS      N   P +AG+TL +    + DA W PT+++  + G
Sbjct:  152 LQITVRNIHVRYEDKLS------NPEHPFSAGLTLAEFSAVSTDADWNPTFIQNSQEG 203
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: A0A061H3P9_9BASI (Uncharacterized protein n=1 Tax=Pseudozyma flocculosa PF-1 TaxID=1277687 RepID=A0A061H3P9_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 7.100e-8
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYVRGGETG 174
            LQITV+NIH+RYED LS      N   P +AG+TL +    + DA+W PT+++    G
Sbjct:  154 LQITVRNIHIRYEDRLS------NPEHPFSAGITLAEFSAVSTDANWTPTFIQSSAEG 205
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: N1J671_BLUG1 (Vacuolar protein sorting-associated protein (Fragment) n=1 Tax=Blumeria graminis f. sp. hordei (strain DH14) TaxID=546991 RepID=N1J671_BLUG1)

HSP 1 Score: 56.6 bits (135), Expect = 7.130e-8
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYVR 159
            LQITVKNIH+RYED +S  G       P A GVTL +    + D  WRPTY++
Sbjct:  151 LQITVKNIHIRYEDSISAPG------HPFAVGVTLQEFSAISTDEDWRPTYIQ 197
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: A0A4Y7QN06_9AGAM (Vacuolar protein sorting-associated protein 13 n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QN06_9AGAM)

HSP 1 Score: 56.6 bits (135), Expect = 7.140e-8
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYV 156
            LQ+TVKNIH+RYED+LS  G       P AAGVTL      + D  WRPT++
Sbjct:  153 LQVTVKNIHIRYEDDLSCPG------HPFAAGVTLAGFTAISTDDEWRPTFI 198
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: A0A6G1IJX8_9PLEO (Vacuolar protein sorting-associated protein n=1 Tax=Lentithecium fluviatile CBS 122367 TaxID=1168545 RepID=A0A6G1IJX8_9PLEO)

HSP 1 Score: 56.6 bits (135), Expect = 7.140e-8
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYVRGGET 171
            +Q+TVKNIH+RYED +S  G       P A G+TL      + D +W+PT+++GG T
Sbjct:  151 VQVTVKNIHIRYEDSISDPG------HPFALGITLADFSAISTDENWKPTFIQGGTT 201
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BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: A0A316YSQ1_9BASI (Uncharacterized protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YSQ1_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 7.140e-8
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYVRGGETG 174
            LQITV+NIH+RYED+LS      N   P AAG+TL +    + D  W+PT+V+    G
Sbjct:  154 LQITVRNIHVRYEDDLS------NPEHPFAAGLTLAEFSAVSTDKDWKPTFVQNSAEG 205
[Close]
BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Match: A0A316UKN2_9BASI (DUF1162-domain-containing protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UKN2_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 7.140e-8
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPTYVRGGETG 174
            LQITV+NIH+RYED LS      N   P AAG TL++    + DA+W PT+++    G
Sbjct:  154 LQITVRNIHVRYEDSLS------NPEHPFAAGFTLSEFSAVSTDANWNPTFIQNSAEG 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1604.3506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6C3_9PHAE6.520e-1868.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMF5_ECTSI6.560e-1868.97FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI001C7C5F195.220e-851.92uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
A0A0P1BCL7_9BASI5.220e-844.83Vacuolar protein sorting-associated protein n=2 Ta... [more]
A0A061H3P9_9BASI7.100e-844.83Uncharacterized protein n=1 Tax=Pseudozyma floccul... [more]
N1J671_BLUG17.130e-850.94Vacuolar protein sorting-associated protein (Fragm... [more]
A0A4Y7QN06_9AGAM7.140e-851.92Vacuolar protein sorting-associated protein 13 n=1... [more]
A0A6G1IJX8_9PLEO7.140e-843.86Vacuolar protein sorting-associated protein n=1 Ta... [more]
A0A316YSQ1_9BASI7.140e-846.55Uncharacterized protein n=1 Tax=Acaromyces ingoldi... [more]
A0A316UKN2_9BASI7.140e-846.55DUF1162-domain-containing protein n=1 Tax=Jaminaea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1604contigH-paniculata_contig1604:24987..25160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7FMF5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929283.3897822-CDS-H-paniculata_contig1604:24986..251601622929283.3897822-CDS-H-paniculata_contig1604:24986..25160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1604 24987..25160 +
1691480800.4610343-CDS-H-paniculata_contig1604:24986..251601691480800.4610343-CDS-H-paniculata_contig1604:24986..25160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1604 24987..25160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1604.3506.1prot_H-paniculata_contig1604.3506.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1604 24987..25160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1604.3506.1

>prot_H-paniculata_contig1604.3506.1 ID=prot_H-paniculata_contig1604.3506.1|Name=mRNA_H-paniculata_contig1604.3506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
LQITVKNIHLRYEDELSLEGSGQNVPRPLAAGVTLTQLVVQTVDASWRPT
YVRGGETG
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mRNA from alignment at H-paniculata_contig1604:24987..25160+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1604.3506.1 ID=mRNA_H-paniculata_contig1604.3506.1|Name=mRNA_H-paniculata_contig1604.3506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig1604:24987..25160+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAGATCACCGTGAAGAACATTCACCTGAGGTATGAAGATGAACTCAG
TCTAGAAGGAAGTGGACAAAATGTCCCGAGGCCCCTGGCCGCGGGTGTGA
CCCTGACCCAGCTGGTGGTGCAGACGGTGGATGCTAGCTGGAGGCCTACG
TACGTCCGCGGGGGAGAGACGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1604:24987..25160+

>mRNA_H-paniculata_contig1604.3506.1 ID=mRNA_H-paniculata_contig1604.3506.1|Name=mRNA_H-paniculata_contig1604.3506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig1604:24987..25160+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAGATCACCGTGAAGAACATTCACCTGAGGTATGAAGATGAACTCAG
TCTAGAAGGAAGTGGACAAAATGTCCCGAGGCCCCTGGCCGCGGGTGTGA
CCCTGACCCAGCTGGTGGTGCAGACGGTGGATGCTAGCTGGAGGCCTACG
TACGTCCGCGGGGGAGAGACGGGCCTGCAGATCACCGTGAAGAACATTCA
CCTGAGGTATGAAGATGAACTCAGTCTAGAAGGAAGTGGACAAAATGTCC
CGAGGCCCCTGGCCGCGGGTGTGACCCTGACCCAGCTGGTGGTGCAGACG
GTGGATGCTAGCTGGAGGCCTACGTACGTCCGCGGGGGAGAGACGGGC
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