mRNA_H-paniculata_contig16039.3503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16039.3503.1
Unique NamemRNA_H-paniculata_contig16039.3503.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.070e-29
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+GVAV+GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  I+ MD+GERR +   + + QGDG+GP LFC  + PI+
Sbjct:  113 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIV 219
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 7.520e-28
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+GVAV+GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  I+ MD+GERR +   + + QGDG+GP LFC  + PI+
Sbjct:  112 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIV 218
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.100e-27
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+GVAV+GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  I+ MD+GERR +   + + QGDG+GP LFC  + PI+
Sbjct:  431 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIV 537
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.530e-27
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+GVAV+GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  I+ MD+GERR +   + + QGDG+GP LFC  + PI+
Sbjct:  502 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIV 608
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.560e-27
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+GVAV+GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  I+ MD+GERR +   + + QGDG+GP LFC  + PI+
Sbjct:  481 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIV 587
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.820e-27
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+GVAV+GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + +   P L  +IA+CY E PA  I+ MD+GERR +   + + QGDG+GP LFC  + PI+
Sbjct:  480 QFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIV 586
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 5.710e-27
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+GVAV+GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  I+ MD+G RR +     + QGDG+GP LFC  + PI+
Sbjct:  203 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPII 309
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.170e-27
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+GVAV+GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  I+ MD+GE R +   + + QGDG+GP LFC  + PI+
Sbjct:  488 QFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIV 594
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.530e-27
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPILRSAEN 336
            Q+GVAV+GG E   + A+  HQ G W+I  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  +++MD+GERR +   + + QGDG+GP LF + + PI+   ++
Sbjct:  651 QFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQD 762
[Close]
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.290e-26
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    1 QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAIRTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFCMPVGPIL 321
            Q+G AV GG E   + A+  HQ G+W++  DC+NAFN+ KR AI+ + A   P L  +IA+CY E PA  I+ MD+GERR +   + + QGDG+GP LFC  + PI+
Sbjct:   28 QFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIV 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16039.3503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE2.070e-2947.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE7.520e-2847.66Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KAK8_9PHAE1.100e-2747.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI32_9PHAE1.530e-2747.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE1.560e-2747.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE3.820e-2746.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE5.710e-2746.73Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA96_9PHAE7.170e-2746.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE7.530e-2744.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE1.290e-2646.73Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16039contigH-paniculata_contig16039:12..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score62.8
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929283.1583874-CDS-H-paniculata_contig16039:11..3621622929283.1583874-CDS-H-paniculata_contig16039:11..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16039 12..362 +
1691480800.372861-CDS-H-paniculata_contig16039:11..3621691480800.372861-CDS-H-paniculata_contig16039:11..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16039 12..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16039.3503.1prot_H-paniculata_contig16039.3503.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16039 12..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16039.3503.1

>prot_H-paniculata_contig16039.3503.1 ID=prot_H-paniculata_contig16039.3503.1|Name=mRNA_H-paniculata_contig16039.3503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
QYGVAVSGGAELTGLRAKAHHQLGYWLIALDCTNAFNSVKRAAILEEVAI
RTPGLTPFIAKCYGEKPADIIFQMDTGERRRMSSNTRIHQGDGLGPALFC
MPVGPILRSAENNSRL*
back to top

mRNA from alignment at H-paniculata_contig16039:12..362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16039.3503.1 ID=mRNA_H-paniculata_contig16039.3503.1|Name=mRNA_H-paniculata_contig16039.3503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig16039:12..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACGGGGTAGCAGTCTCAGGCGGCGCGGAGCTCACGGGCCTCCGCGC
GAAAGCACACCACCAATTGGGGTATTGGCTTATCGCCCTCGACTGTACCA
ATGCCTTCAACTCCGTCAAGCGGGCGGCGATCTTGGAAGAAGTGGCAATC
CGCACCCCGGGACTGACACCCTTCATTGCCAAATGTTACGGGGAAAAGCC
GGCAGATATAATTTTCCAGATGGACACTGGCGAACGCAGGAGAATGTCCT
CAAACACGAGAATCCACCAGGGCGACGGACTGGGACCCGCCCTCTTCTGC
ATGCCCGTGGGACCGATCTTGCGAAGTGCCGAGAACAATTCGAGGCTCTA
G
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16039:12..362+

>mRNA_H-paniculata_contig16039.3503.1 ID=mRNA_H-paniculata_contig16039.3503.1|Name=mRNA_H-paniculata_contig16039.3503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig16039:12..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACGGGGTAGCAGTCTCAGGCGGCGCGGAGCTCACGGGCCTCCGCGC
GAAAGCACACCACCAATTGGGGTATTGGCTTATCGCCCTCGACTGTACCA
ATGCCTTCAACTCCGTCAAGCGGGCGGCGATCTTGGAAGAAGTGGCAATC
CGCACCCCGGGACTGACACCCTTCATTGCCAAATGTTACGGGGAAAAGCC
GGCAGATATAATTTTCCAGATGGACACTGGCGAACGCAGGAGAATGTCCT
CAAACACGAGAATCCACCAGGGCGACGGACTGGGACCCGCCCTCTTCTGC
ATGCCCGTGGGACCGATCTTGCGAAGTGCCGAGAACAATTCGAGGCTCTA
GCAGTACGGGGTAGCAGTCTCAGGCGGCGCGGAGCTCACGGGCCTCCGCG
CGAAAGCACACCACCAATTGGGGTATTGGCTTATCGCCCTCGACTGTACC
AATGCCTTCAACTCCGTCAAGCGGGCGGCGATCTTGGAAGAAGTGGCAAT
CCGCACCCCGGGACTGACACCCTTCATTGCCAAATGTTACGGGGAAAAGC
CGGCAGATATAATTTTCCAGATGGACACTGGCGAACGCAGGAGAATGTCC
TCAAACACGAGAATCCACCAGGGCGACGGACTGGGACCCGCCCTCTTCTG
CATGCCCGTGGGACCGATCTTGCGAAGTGCCGAGAACAATTCGAGGCTCT
AG
back to top