prot_H-paniculata_contig16026.3500.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16026.3500.1
Unique Nameprot_H-paniculata_contig16026.3500.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length62
Homology
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.350e-14
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    1 AVFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 57
            A+F AFG + AV MS DP TG H+GFCF++Y     AE AL ++NGFELAGR IKVG
Sbjct:  137 AIFGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKVG 193          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A7S2WU02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU02_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.860e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0
Query:    2 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 57
            VF +FG +  V MSF+P TG H+GFCF++Y N   A+ AL  +NGFELAGR IKVG
Sbjct:  157 VFGSFGNIIDVTMSFEPATGKHKGFCFIEYDNTPAADQALQAMNGFELAGRPIKVG 212          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.220e-13
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    2 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 57
            +F+ FGA++ V MS D +TG H+GFCF++Y +V+ A+ AL  +NGFELAGRAIKVG
Sbjct:  306 IFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVG 361          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A7S2AH99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AH99_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.890e-13
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    2 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 57
            VF AFG +  V MS++P TG  +G+CF++Y+N   A  AL  +NGFELAGR IKVG
Sbjct:  130 VFEAFGKITEVTMSYEPATGKSKGYCFIEYENPNSANQALQAMNGFELAGRQIKVG 185          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A317XYK1_9BASI (Splicing factor, CC1-like protein n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XYK1_9BASI)

HSP 1 Score: 69.7 bits (169), Expect = 2.030e-12
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0
Query:    1 AVFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 59
            AVF  FG +E V +  +P TG  +GFCF+ ++N +GA+ AL ++NGFELAGRAI+VG V
Sbjct:  471 AVFEPFGEIEYVDLHREPGTGKSKGFCFIQFKNADGAKKALESMNGFELAGRAIRVGKV 529          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: W7U4B1_9STRA (PolyU-binding-splicing factor PUF60 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4B1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.760e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 0
Query:    2 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 57
            VF+ FGA+ ++ MSF+P TG  +GF FVD++  E A  AL  +NGF+LAGR +KVG
Sbjct:  233 VFAPFGAIRSINMSFEPGTGRSKGFAFVDFEQAESATMALQTMNGFQLAGRTLKVG 288          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: V5F0G7_KALBG (Transcriptional coactivator CAPER n=1 Tax=Kalmanozyma brasiliensis (strain GHG001) TaxID=1365824 RepID=V5F0G7_KALBG)

HSP 1 Score: 67.0 bits (162), Expect = 1.770e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0
Query:    1 AVFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 59
            AVF  FG +E V +  +P TG  +GFCF+ Y+  E A+ AL  +NGFELAGRAI+VG V
Sbjct:  212 AVFEPFGEIEYVDLHREPGTGKSKGFCFIQYKQAEDAKKALEQMNGFELAGRAIRVGNV 270          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: U9UN45_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9UN45_RHIID)

HSP 1 Score: 67.0 bits (162), Expect = 1.780e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 0
Query:    2 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 59
            VF  FG +E V +  DP TG  RGF F+ Y+N E A+ AL  +NGFELAGR IKVG V
Sbjct:  261 VFEPFGPLEFVNLHKDPETGRSRGFAFIQYKNPEDAKQALEKMNGFELAGRTIKVGLV 318          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A015LKX8_RHIIW (Pab1p n=14 Tax=Glomeraceae TaxID=36751 RepID=A0A015LKX8_RHIIW)

HSP 1 Score: 67.0 bits (162), Expect = 1.780e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 0
Query:    2 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 59
            VF  FG +E V +  DP TG  RGF F+ Y+N E A+ AL  +NGFELAGR IKVG V
Sbjct:  255 VFEPFGPLEFVNLHKDPETGRSRGFAFIQYKNPEDAKQALEKMNGFELAGRTIKVGLV 312          
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A397IZN6_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IZN6_9GLOM)

HSP 1 Score: 67.0 bits (162), Expect = 1.790e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 0
Query:    2 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 59
            VF  FG +E V +  DP TG  RGF F+ Y+N E A+ AL  +NGFELAGR IKVG V
Sbjct:  271 VFEPFGPLEFVNLHKDPETGRSRGFAFIQYKNPEDAKQALEKMNGFELAGRTIKVGLV 328          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC18_9STRA1.350e-1461.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WU02_9STRA2.860e-1458.93Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FWX1_ECTSI1.220e-1358.93RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A7S2AH99_9STRA7.890e-1355.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A317XYK1_9BASI2.030e-1254.24Splicing factor, CC1-like protein n=1 Tax=Testicul... [more]
W7U4B1_9STRA3.760e-1253.57PolyU-binding-splicing factor PUF60 n=2 Tax=Monodo... [more]
V5F0G7_KALBG1.770e-1154.24Transcriptional coactivator CAPER n=1 Tax=Kalmanoz... [more]
U9UN45_RHIID1.780e-1156.90Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A015LKX8_RHIIW1.780e-1156.90Pab1p n=14 Tax=Glomeraceae TaxID=36751 RepID=A0A01... [more]
A0A397IZN6_9GLOM1.790e-1156.90Uncharacterized protein n=1 Tax=Diversispora epiga... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 2..57
e-value: 0.0019
score: 27.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..55
e-value: 1.8E-14
score: 53.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..56
score: 12.901
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..59
e-value: 2.2E-16
score: 62.0
NoneNo IPR availablePANTHERPTHR47330FAMILY NOT NAMEDcoord: 3..57
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16026contigH-paniculata_contig16026:5700..5885 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16026.3500.1mRNA_H-paniculata_contig16026.3500.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16026 5700..5885 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16026.3500.1 ID=prot_H-paniculata_contig16026.3500.1|Name=mRNA_H-paniculata_contig16026.3500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
AVFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELA
GRAIKVGCVLL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf