mRNA_H-paniculata_contig16026.3500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16026.3500.1
Unique NamemRNA_H-paniculata_contig16026.3500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.350e-14
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 AVFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 171
            A+F AFG + AV MS DP TG H+GFCF++Y     AE AL ++NGFELAGR IKVG
Sbjct:  137 AIFGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKVG 193
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A7S2WU02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU02_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.860e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    4 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 171
            VF +FG +  V MSF+P TG H+GFCF++Y N   A+ AL  +NGFELAGR IKVG
Sbjct:  157 VFGSFGNIIDVTMSFEPATGKHKGFCFIEYDNTPAADQALQAMNGFELAGRPIKVG 212
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.220e-13
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    4 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 171
            +F+ FGA++ V MS D +TG H+GFCF++Y +V+ A+ AL  +NGFELAGRAIKVG
Sbjct:  306 IFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVG 361
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A7S2AH99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AH99_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.890e-13
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 171
            VF AFG +  V MS++P TG  +G+CF++Y+N   A  AL  +NGFELAGR IKVG
Sbjct:  130 VFEAFGKITEVTMSYEPATGKSKGYCFIEYENPNSANQALQAMNGFELAGRQIKVG 185
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A317XYK1_9BASI (Splicing factor, CC1-like protein n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XYK1_9BASI)

HSP 1 Score: 69.7 bits (169), Expect = 2.030e-12
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 AVFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 177
            AVF  FG +E V +  +P TG  +GFCF+ ++N +GA+ AL ++NGFELAGRAI+VG V
Sbjct:  471 AVFEPFGEIEYVDLHREPGTGKSKGFCFIQFKNADGAKKALESMNGFELAGRAIRVGKV 529
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: W7U4B1_9STRA (PolyU-binding-splicing factor PUF60 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4B1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.760e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    4 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVG 171
            VF+ FGA+ ++ MSF+P TG  +GF FVD++  E A  AL  +NGF+LAGR +KVG
Sbjct:  233 VFAPFGAIRSINMSFEPGTGRSKGFAFVDFEQAESATMALQTMNGFQLAGRTLKVG 288
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: V5F0G7_KALBG (Transcriptional coactivator CAPER n=1 Tax=Kalmanozyma brasiliensis (strain GHG001) TaxID=1365824 RepID=V5F0G7_KALBG)

HSP 1 Score: 67.0 bits (162), Expect = 1.770e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 AVFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 177
            AVF  FG +E V +  +P TG  +GFCF+ Y+  E A+ AL  +NGFELAGRAI+VG V
Sbjct:  212 AVFEPFGEIEYVDLHREPGTGKSKGFCFIQYKQAEDAKKALEQMNGFELAGRAIRVGNV 270
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: U9UN45_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9UN45_RHIID)

HSP 1 Score: 67.0 bits (162), Expect = 1.780e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    4 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 177
            VF  FG +E V +  DP TG  RGF F+ Y+N E A+ AL  +NGFELAGR IKVG V
Sbjct:  261 VFEPFGPLEFVNLHKDPETGRSRGFAFIQYKNPEDAKQALEKMNGFELAGRTIKVGLV 318
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A015LKX8_RHIIW (Pab1p n=14 Tax=Glomeraceae TaxID=36751 RepID=A0A015LKX8_RHIIW)

HSP 1 Score: 67.0 bits (162), Expect = 1.780e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    4 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 177
            VF  FG +E V +  DP TG  RGF F+ Y+N E A+ AL  +NGFELAGR IKVG V
Sbjct:  255 VFEPFGPLEFVNLHKDPETGRSRGFAFIQYKNPEDAKQALEKMNGFELAGRTIKVGLV 312
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BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Match: A0A397IZN6_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IZN6_9GLOM)

HSP 1 Score: 67.0 bits (162), Expect = 1.790e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    4 VFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELAGRAIKVGCV 177
            VF  FG +E V +  DP TG  RGF F+ Y+N E A+ AL  +NGFELAGR IKVG V
Sbjct:  271 VFEPFGPLEFVNLHKDPETGRSRGFAFIQYKNPEDAKQALEKMNGFELAGRTIKVGLV 328
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16026.3500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC18_9STRA1.350e-1461.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WU02_9STRA2.860e-1458.93Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FWX1_ECTSI1.220e-1358.93RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A7S2AH99_9STRA7.890e-1355.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A317XYK1_9BASI2.030e-1254.24Splicing factor, CC1-like protein n=1 Tax=Testicul... [more]
W7U4B1_9STRA3.760e-1253.57PolyU-binding-splicing factor PUF60 n=2 Tax=Monodo... [more]
V5F0G7_KALBG1.770e-1154.24Transcriptional coactivator CAPER n=1 Tax=Kalmanoz... [more]
U9UN45_RHIID1.780e-1156.90Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A015LKX8_RHIIW1.780e-1156.90Pab1p n=14 Tax=Glomeraceae TaxID=36751 RepID=A0A01... [more]
A0A397IZN6_9GLOM1.790e-1156.90Uncharacterized protein n=1 Tax=Diversispora epiga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16026contigH-paniculata_contig16026:5700..5885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue9.9e-12
Seed eggNOG ortholog2880.D7FWX1
Preferred namePUF60
KEGG koko:K11798,ko:K12811,ko:K12838
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007282,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0042127,GO:0042162,GO:0042752,GO:0042789,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045727,GO:0045893,GO:0045926,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048468,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051301,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0124@1,KOG0124@2759
EC3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.8070953-CDS-H-paniculata_contig16026:5699..58851622929282.8070953-CDS-H-paniculata_contig16026:5699..5885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16026 5700..5885 -
1691480800.2055337-CDS-H-paniculata_contig16026:5699..58851691480800.2055337-CDS-H-paniculata_contig16026:5699..5885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16026 5700..5885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16026.3500.1prot_H-paniculata_contig16026.3500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16026 5700..5885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16026.3500.1

>prot_H-paniculata_contig16026.3500.1 ID=prot_H-paniculata_contig16026.3500.1|Name=mRNA_H-paniculata_contig16026.3500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
AVFSAFGAVEAVCMSFDPTTGGHRGFCFVDYQNVEGAEYALANLNGFELA
GRAIKVGCVLL*
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mRNA from alignment at H-paniculata_contig16026:5700..5885-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16026.3500.1 ID=mRNA_H-paniculata_contig16026.3500.1|Name=mRNA_H-paniculata_contig16026.3500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig16026:5700..5885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTTTTTCTGCATTCGGAGCAGTGGAAGCCGTCTGTATGTCGTTCGA
TCCGACTACCGGCGGTCACCGCGGGTTCTGCTTCGTCGACTACCAAAACG
TGGAGGGAGCCGAGTACGCCTTGGCCAACCTCAACGGCTTCGAGTTGGCG
GGTCGCGCCATCAAGGTAGGTTGCGTCCTACTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16026:5700..5885-

>mRNA_H-paniculata_contig16026.3500.1 ID=mRNA_H-paniculata_contig16026.3500.1|Name=mRNA_H-paniculata_contig16026.3500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig16026:5700..5885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTTTTTCTGCATTCGGAGCAGTGGAAGCCGTCTGTATGTCGTTCGA
TCCGACTACCGGCGGTCACCGCGGGTTCTGCTTCGTCGACTACCAAAACG
TGGAGGGAGCCGAGTACGCCTTGGCCAACCTCAACGGCTTCGAGTTGGCG
GGTCGCGCCATCAAGGTAGGTTGCGTCCTACTTTGAGCCGTTTTTTCTGC
ATTCGGAGCAGTGGAAGCCGTCTGTATGTCGTTCGATCCGACTACCGGCG
GTCACCGCGGGTTCTGCTTCGTCGACTACCAAAACGTGGAGGGAGCCGAG
TACGCCTTGGCCAACCTCAACGGCTTCGAGTTGGCGGGTCGCGCCATCAA
GGTAGGTTGCGTCCTACTTTGA
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