prot_H-paniculata_contig16015.3496.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16015.3496.1
Unique Nameprot_H-paniculata_contig16015.3496.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length148
Homology
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.640e-29
Identity = 62/146 (42.47%), Postives = 93/146 (63.70%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPP---EVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNITQRFRIKDLGSL 142
            ++T+R + ++A   D E + MDVD AY+ + +EE+++VK PP   +  P   ++  V RLRK LYGLKQSGRNW+  +D +  G G   S+ + CLY+     GE  L++ +YVDDL+IAG  R+ VD+FK  I++   +KDL  L
Sbjct:   64 ITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKEL 206          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.190e-28
Identity = 63/144 (43.75%), Postives = 90/144 (62.50%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPF-SRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNITQRFRIKDLGSL 142
            ++T+R V +LA   D E + MDV+ AY+ + +EE+++VK PP    + S     V RLRK LYGLKQSGRNW+  +D +  G G   S+ + CLY+     GE  L++ +YVDDL+I    RE V +FKH I++ F +KDL  L
Sbjct:   64 ITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKEL 206          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 117 bits (293), Expect = 3.680e-28
Identity = 56/144 (38.89%), Postives = 94/144 (65.28%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRD-IPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNITQRFRIKDLGSL 142
            ++++  +  LAA++D     MDV  A+++AP++ E+F++ P      S + +  V+RL+K LYGLKQSGRNWN  LD++L+  G  R+  + C+Y  +   GE  ++V ++VDDL+IA    +K+ +FK N+  +FR+KDLG +
Sbjct:  234 ITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEI 375          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 117 bits (292), Expect = 1.140e-27
Identity = 55/144 (38.19%), Postives = 94/144 (65.28%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRD-IPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNITQRFRIKDLGSL 142
            ++++R +  LAA+++     MDV  A+++ P++ E+F++ P      S + +  V+RL+K LYGLKQSGRNWN  LD++L+  G  R+  + C+Y  +   GE  ++V ++VDDL+IA    +K+ +FK N+  +FR+KDLG +
Sbjct:  259 ITSIRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEI 400          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.620e-27
Identity = 62/144 (43.06%), Postives = 89/144 (61.81%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDI-PFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNITQRFRIKDLGSL 142
            M+T+R V +LA   D E + MDVD AY+ + +EE++++K PP    +  +    V RLRK LYGLKQSGRNW+  +D +  G GL  S  + CLY+     GE  L++ +YVDDL+I    R   D+FK +I++ F +KDL  L
Sbjct:  284 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKEL 426          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 114 bits (285), Expect = 1.290e-26
Identity = 62/143 (43.36%), Postives = 90/143 (62.94%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVH--RLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNITQRFRIKDLG 140
            + ++R + +LAA+HD E + MDV  AY+N  + E+L++ LPP+      DIP  H  +L+K LYGLKQ+GR WN T D  L  +G  R    +CLY+ R +GG+   LV VYVDDL++A   R  +DE K  +   F+++DLG
Sbjct: 1093 LESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPD----GVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLG 1229          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.300e-26
Identity = 60/144 (41.67%), Postives = 90/144 (62.50%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPF-SRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNITQRFRIKDLGSL 142
            ++T+R + ++A   D E + MDV+ AY+ + +EE+++VK P     + S     V RLRK LYGLKQSGRNW+  +D +  G G   S+ + CLY+     GE  L++ +YVDDL+I    RE V++FKH I++ F +KDL  L
Sbjct:  504 ITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKEL 646          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.310e-26
Identity = 62/144 (43.06%), Postives = 88/144 (61.11%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDI-PFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNITQRFRIKDLGSL 142
            M+T+R V +LA   D E + MDVD AY+ + +EE++++K P     +  +    V RLRK LYGLKQSGRNW+  +D +  G G   S+ + CLY+     GE  L+V +YVDDL+IA   R   D+FK  I++ F +KDL  L
Sbjct:  582 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKEL 724          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A2R6NJS8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NJS8_9APHY)

HSP 1 Score: 112 bits (280), Expect = 5.910e-26
Identity = 56/142 (39.44%), Postives = 88/142 (61.97%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNITQRFRIKDLGSL 142
            +TLR   S  A+ D+E   MDV  AY+   ++EE+++K+P  +    ++  +  RL+K LYGLKQSGR W   LD+ +  +G ++   + CLY+ ++DG    L+V VYVDD+ +AG++   V  FKH++ +RF I D G L
Sbjct:  655 TTLRAFMSFVADQDWELHQMDVVGAYLQGDLDEEIYMKVPEGIKEPGKE-GWCWRLKKALYGLKQSGRQWKKKLDEAMAELGFEKGQADECLYVLKEDG-HIVLMVLVYVDDMAVAGKKLALVKRFKHDLAERFDITDGGDL 794          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT)

HSP 1 Score: 106 bits (265), Expect = 6.700e-26
Identity = 56/144 (38.89%), Postives = 92/144 (63.89%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPF-VHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGR-REKVDEFKHNITQRFRIKDLGSL 142
            M+++R +  LA +++     MDV  AY+NAP++ EL+V+ P   +   +D  + V++LRK LYGLKQSGRNWN+ L   LV  G  +S ++SC+Y      G++  +V ++VDD++IA      +   K N+++RF++KD+G L
Sbjct:   71 MTSIRILMQLAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKIS--GKSMTIVIIWVDDIIIASNCTVTLTNVKGNLSKRFQMKDMGKL 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TII5_9STRA2.640e-2942.47Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA3.190e-2843.75Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A7D9HG25_PARCT3.680e-2838.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HLY2_PARCT1.140e-2738.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA4.620e-2743.06Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A409WVI7_9AGAR1.290e-2643.36Integrase catalytic domain-containing protein (Fra... [more]
W7T0T3_9STRA2.300e-2641.67Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA4.310e-2643.06Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A2R6NJS8_9APHY5.910e-2639.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9L0S1_PARCT6.700e-2638.89Retrovirus-related Pol poly from transposon TNT 1-... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..142
e-value: 7.5E-32
score: 110.9
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 54..140
NoneNo IPR availablePANTHERPTHR11439:SF263coord: 54..140
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 20..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16015contigH-paniculata_contig16015:1013..1456 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16015.3496.1mRNA_H-paniculata_contig16015.3496.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16015 134..1689 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16015.3496.1 ID=prot_H-paniculata_contig16015.3496.1|Name=mRNA_H-paniculata_contig16015.3496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRD
IPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDG
GETNLLVTVYVDDLVIAGRREKVDEFKHNITQRFRIKDLGSLLRVWE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like