mRNA_H-paniculata_contig16015.3496.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16015.3496.1
Unique NamemRNA_H-paniculata_contig16015.3496.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 181 bits (458), Expect = 3.350e-46
Identity = 136/486 (27.98%), Postives = 235/486 (48.35%), Query Frame = 3
Query:  105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRRE-KVDEFKHNITQRFRIKDLGSLLRVWE*KYDVTALMVP*P-SRRVATSARY*KDTVLT--GVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQELDLT*HTRWCTNQHVVCRTHVEKTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRG------PKVHNRIRFQA*RWCDKLVI*EATVSHVVQ-------YRGRARCC-------------RRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSG--AQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
            +W+F+ K   DG+V  ++ARLVAQGFSQ   +D+ E  + VAR  ++RTV +LAA+H  +   MDV  A++N  ++EE+++K         ++   V RLR+ +YGLKQS R WN+ LD  L  +G  ++T + C+Y+ +++GGE   ++ VYVDD+++AG+ + K++E K  + ++F++KD+G L       Y +   ++P P S+ +         +VL   G+E   P            +  +N       +    Q +D   +   C   H++       T     + + +S +   S        W    RI     G R  G          + + +    W   L   ++T  +V Q       +R + + C               + +E V+ ++LL  +     G   + EDN++AI ++K +    + KHI +++H IRE +    + L+Y  T +  ADI TKGLS V+F +L
Sbjct:   29 KWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKE-HLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQL------HYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKP-----------ASTPVNPGTKLKKAADDSQRVDQVNYQ--CAVGHLL----YLSTKTRPDIAYAVSDVARFSA-DPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKL 487          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 177 bits (449), Expect = 3.860e-45
Identity = 126/475 (26.53%), Postives = 231/475 (48.63%), Query Frame = 3
Query:  105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNITQRFRIKDLGSL------------LRVWE*KYDVTALMVP*PSRRVATSARY*KDT---VLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQELDLT*HTRWCTNQHVVCRTHVE---KTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSG--AQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
            +W+FK K   DGS+ R++ARLVAQGFSQ    D+ E  + V R  ++RTV +L+ +   +   MDV AA++N  +E+E+++K P       ++     +L K LYGLKQS R WN+ LD+ L  IG  ++ ++ C+Y+  +DG     +V ++VDD+++AG+  EK+ + K +I +RF++KD+G L             +VW  +   TA ++               D    +++ +E+     +E+ +      + L+S    D +         + +    TN+H      +    K +V+  + +  S       +  +  +W+         L  R        +I   A  W  K     A  +   +Y   +     + +E ++ R+LL  +        T++EDN+SAI +SK      ++KHI ++++ +R+ + ++ L + Y  TG   AD+ TKG+ + +F++L
Sbjct:  193 KWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANP---TNEHWTAVKRIFRYLKGTVNYGLLY--SENANPDCVGFSDADWAGD-------LNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSA----AAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKL 648          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 180 bits (456), Expect = 4.020e-45
Identity = 128/475 (26.95%), Postives = 231/475 (48.63%), Query Frame = 3
Query:  105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNITQRFRIKDLGSL------------LRVWE*KYDVTALMVP*PSRRVATSARY*KDT---VLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQELDLT*HTRWCTNQHVVCRTHVE---KTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSG--AQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
            +W+FK K   DGS+ R++ARLVAQGFSQ    D+ E  + V R   +RTV +L+ +   +   MDV AA++N  +E+E+++K P       ++   V +L K LYGLKQS R WN+ LD+ L  IG  ++ ++ C+Y+  +DG     +V ++VDD+++AG+  EK+ + K +I +RF++KD+G L             +VW  +   TA ++               D    +++ +E+     +E+ +      + L+S    D +         + +    TN+H      +    K +V+  + +  S       +  +  +W+         L  R        +I   A  W  K     A  +   +Y   +     + +E ++ R+LL  +        T++EDN+SAI +SK      ++KHI +++H +R+ + ++ L + Y  TG   AD+ TKG+ + +F++L
Sbjct:  807 KWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANP---TNEHWTAVKRIFRYLKGTVNYGLLY--SENANPDCVGFSDADWAGD-------LNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSA----AAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKL 1262          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 177 bits (450), Expect = 2.560e-44
Identity = 145/480 (30.21%), Postives = 232/480 (48.33%), Query Frame = 3
Query:  105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRREK-VDEFKHNITQRFRIKDLGSLLRVWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSC-PPRQELDLT*HTRWCTNQH--------VVCRTHVEKTSVH-ASVFFVISVLCLT----------SVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQY---RGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGS--GAQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
            +W++K K    G++ +++ARLVA+G+ Q +  DF E  A VARM T+R + +LAA+  +E   MDV +A++N  +EEE++V  PP       +   V +LRK LYGL+Q+ R WN  LD+ L+ +  ++S T S +Y+     G++ L+V VYVDDL+I G ++K +D FK  + QRF + DLG L       Y    ++       ++ SA   K    TG+E   P        + P+  +L         C  P +   +    R+  N           V R   + TS H A+V  ++  +  T           V  + +  +S S       + G     K    + F   R+   L+  ++    VV              +  + ++   L+  +     G TTL  DNKSAINL K      ++KHI  R+H IRE + ++ +A++YV + DQ AD+LTK + RV+F+ L
Sbjct:  958 KWVYKLKKDPSGAIVKHKARLVAKGYVQQQGVDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQPPGFDD-KTNASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAVYVRGV--GDSKLIVGVYVDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSY-----YLGMEVVQKGEGIFLSQSAYAGKILEKTGMEGCNPT-------QVPMEARLKLSKEGTGECVDPTEYRSIVGSLRYLVNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHILRYISGTIKTGCWYGREEVGNAKLVGFSDS------DMAGDLDDRKSTTGVLF---RYGGSLISWQSQKQKVVALSSCEAEYIAATTAACQGIWLSRLIAELLDAEPGQTTLMIDNKSAINLCKNPVFHDRSKHIDTRYHFIRECVEKKQIAVEYVCSEDQLADLLTKPVGRVRFKEL 1413          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: UPI00193CA733 (uncharacterized protein LOC105202753 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193CA733)

HSP 1 Score: 176 bits (445), Expect = 5.900e-44
Identity = 144/497 (28.97%), Postives = 226/497 (45.47%), Query Frame = 3
Query:   45 WDMGKRRPG*VIGRVEGDSYEWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRREKV-DEFKHNITQRFRIKDLGSLLRVWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQE----------LDLT*HTRWCTNQHVVCRTHVEKTSVH--ASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNR--------IRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINL--SKGSGAQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
            W++    PG  +      + +W+FK KL  +G +  ++ARLVA+GFSQA  ED++E  A V +  T+R +  +AA+       +DV +AY+N  +EEE+F++ PP      ++   V RLRK LYGLKQS R WN    + LV IG        CLY  ++  G T   V +YVDDL++AG   K+ +E   ++ + F IKDLG          DV   +     R+   S+   +   +T + E   L   K          LNS +      P   +          +         T   ++CR  VEK +     +V  V+  L  T  +  +++  S       C +     G K   +        +      W  +     AT S   +Y   +     + KE ++FR+LL  +    +G T + EDN+  I L  S   GA+TKHI +  H IR+   ++++ + Y  T    AD+LTK L++ +FQ L
Sbjct:  367 WELTDLPPGKKV-----TTCKWVFKAKLNGEGRIYTHKARLVARGFSQAYGEDYYETFAPVVKHETIRVLLCIAAQKGLHVRHLDVKSAYLNGQLEEEIFLEQPPGFQKSGQESK-VLRLRKSLYGLKQSARAWNKRATEALVQIGFRPGKAEHCLYTRKERNGTTTY-VLLYVDDLLVAGTSTKITEEVSRDLQEYFDIKDLG----------DVNHYLGVQIKRQADGSSLLNQKGKITKILEEYGLLEPKPAATPMETNFLNSRSDDSAKIPNNNKYRKAIGSLLYIATVSRPDIATAVGILCR-RVEKPTKRDWEAVKRVMRYLAFT--INKSLQLSSTDTMELECFVDSDWAGDKTDRKSTSGYVFCLGKGTVAWSSRKQTSVATSSTEAEYIAASH----ASKEVLWFRQLLKDMNIPRKGPTKINEDNQGCIRLIESDRCGARTKHIDICHHKIRDLREKKIIDVCYCPTEAMVADLLTKPLAKERFQEL 839          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 173 bits (439), Expect = 6.660e-43
Identity = 135/487 (27.72%), Postives = 234/487 (48.05%), Query Frame = 3
Query:  105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRRE-KVDEFKHNITQRFRIKDLGSL-----LRVWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSC--PPRQELDLT*HTRWCTNQHV------VCRTHVEKTSVHASVFFVI---------SVLCL------TSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRG--RARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGA--QTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
            +W+FK K    GSV +Y+ARLVAQGFSQ E  D+++  + VA+++TLRT+ ++A + ++  + +DV  A++   + E+++++ P  ++ ++ D+ F  +L K LYGLKQ+ + W+   D+++  +GL++S ++ CLYI  ++     + + +YVDD++IAG    K+ E K  + + F ++D G L     L++    YD T        +      +Y +D +     ++            P+  +LN E      C  P RQ +    +    +   +       CR   +    H +    +         + LC       T ++     +W+ S   R    G      KV N +      W  K     A  S   +Y     A C      E ++ R+LL  +     G   LFEDN+ AI+LS       ++KHI  + H +RE ++E ++ LKY+ T +Q AD+LTKGL   +F+RL
Sbjct:  818 KWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLN-YNSDMIF--KLNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKI---NYDKTV------GKLYINQTQYLEDVLKKFNMDNCNT------ISTPIESKLNIEEDNKQECNQPYRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLF---KVFNCLVS----WSTKRQPTVALSSTEAEYMAVSNATC------EAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEGLIELKYIPTSNQLADLLTKGLGNERFKRL 1273          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: J9M5U1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9M5U1_ACYPI)

HSP 1 Score: 172 bits (436), Expect = 1.900e-42
Identity = 134/487 (27.52%), Postives = 234/487 (48.05%), Query Frame = 3
Query:  105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRRE-KVDEFKHNITQRFRIKDLGSL-----LRVWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSC--PPRQELDLT*HTRWCTNQHV------VCRTHVEKTSVHASVFFVI---------SVLCL------TSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRG--RARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGA--QTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
            +W+FK K    GSV +Y+ARLVAQGFSQ E  D+++  + VA+++TLRT+ ++A + ++  + +DV  A++   + E+++++ P  ++ ++ D+  + +L K LYGLKQ+ + W+   D+++  +GL +S ++ CLYI  ++     + + +YVDD++IAG    K+ E K  + + F ++D G L     L++    YD T        +      +Y +D +     ++            P+  +LN E      C  P RQ +    +    +   +       CR   +    H +    +         + LC       T ++     +W+ S   R    G      KV N +      W  K     A  S   +Y     A C      E ++ R+LL  +     G   LFEDN+ AI+LS       ++KHI  + H +RE ++EE++ LKY+ T +Q AD+L+KGL   +F+RL
Sbjct: 1527 KWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLN-YNSDM--ILKLNKSLYGLKQASKCWHERFDNYIAKLGLKQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKI---NYDKTV------GKLYINQTQYLEDVLKKFNMDNCNT------ISTPIESKLNIEEDNKQECNQPYRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYFKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLF---KVFNCLVS----WSTKRQPTVALSSTEAEYMAVSNATC------EAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEELIELKYIPTSNQLADLLSKGLGNEQFKRL 1982          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 171 bits (434), Expect = 2.770e-42
Identity = 147/498 (29.52%), Postives = 225/498 (45.18%), Query Frame = 3
Query:  105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDD-LVIAGRREKVDEFKHNITQRFRIKDLGS----------------LLRVWE*KYDVTALMVP*PS--RRVATSARY*KDTVLTGVEEHPP---------L*REK*RFRHPVAIQLNSEA**DHSCPPRQE-----LDLT*HTRWCTNQHVV-CRTHVEKTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNR---------IRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSG--AQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQR 1463
            +W+FK K   DG + +Y+ARLVA+GF+Q E  DF E  A VA+ +++RT+ +LAA+ D E   MDV +A++N  ++EE+++K+P   S F R    + +L K LYGLKQ+GR W   +      +G  R  ++  ++   DDG    L++ +YVDD L+++     V   K ++  RF + DLG                 +L + + +Y    L     +  R V+T     +  V     E  P         L       R  +A  + + +   H+  P +E     + +  + R   ++ +V C T  EK                  +LR    +W+ +                V+NR         I   A  W  K     A  S   +Y   A       KE V+ R  L  IG   +G T L  DN+SAI LSK +    +TKHI VR+H IRE      +  +YV TG+Q AD+LTKGL R K ++
Sbjct:  650 KWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVP---SGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG--ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRRVLELSQHQYVEKCLAQHGMANCRPVSTPMAQNQKLVKLSEAEIDPKPYQSALGSLMYAMIGTRPDLAFTVGALS--QHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEK----------------KPLLRYVDADWAAN----------------VNNRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAH----GTKEAVWLRAFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHEK 1104          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR)

HSP 1 Score: 167 bits (423), Expect = 4.050e-42
Identity = 142/502 (28.29%), Postives = 227/502 (45.22%), Query Frame = 3
Query:   45 WDMGKRRPG*VIGRVEGDSYEWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRREKVD-EFKHNITQRFRIKDLGSLLR--------------VWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVA--IQLNSEA**DHSCPPRQELDLT*HTRWCTNQHVVCRTHVEKTSVH--ASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIR----FQA*R----WCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINL--SKGSGAQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQR 1463
            WD+    PG      +  S +W+FK K   +G    Y+ARLVA+GFSQ   ED+ E  A V +  T+R + SLAA        +DV AAY+N+P+EEEL+VK PP      ++   V  LRK LYGLKQS R WN    D L  +G +++  + CL+  ++  G    ++ +YVDDL++ G   K+  E    + + F+ KDLG +                +   +  +  L+          +    +   L+  +E PP+  +  ++R  +   + + + +  D + P                   +CR HVEK +     +V  V+  L  T  +   +R  S  G    C +     G K   +      FQ  +    W  +     A  S   +Y   +  CR    E ++ R+LL  +G   +  T + EDN++ I +  S+  GA+TKH+ V  H +R+   +  + L+Y  +    ADILTK L + KF R
Sbjct:   60 WDLVDLPPG-----KKPISLKWVFKVKPNSEGQADTYKARLVARGFSQRYGEDYDETFAPVVKHDTVRVLLSLAAAQKLHVRHLDVKAAYLNSPLEEELYVKQPPGFEVQGQEHK-VLLLRKSLYGLKQSARAWNKMATDTLTSLGFEQAMADHCLFSKKEKNGSRTYIL-IYVDDLLVVGATPKITKEVGIQMDKFFQTKDLGEVKNYLGIQIEREGDGSILLHQRNKIEQLLEQYGLMECKPAPTPMETGFLSVNQESPPM-PDNTKYRQAIGSLLYVATVSRPDIAAPVG----------------FLCR-HVEKPTEADWKAVKRVMRYLAATKYM--TLRLSSAGGIDLQCYVDADWAGDKADRKSTTGFVFQLGKNTVAWSSRKQSVVALSSTEAEYLAVSHACR----ELLWLRQLLKDLGIAVKDPTIIHEDNQACIKMVNSERYGARTKHVDVCHHHVRDLRAQGTIKLQYCPSDKMRADILTKPLCKDKFSR 530          
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A7D9LDA1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LDA1_PARCT)

HSP 1 Score: 166 bits (420), Expect = 5.280e-42
Identity = 138/465 (29.68%), Postives = 233/465 (50.11%), Query Frame = 3
Query:  108 WIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPE-VSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYIS--RDDGGETNLLVT-VYVDDLV-IAGRREKVDEFKHNITQRFRIKDLGSLLRVWE*KYDVTALMVP*PSRRVAT-SARY*KDTVLT--GVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQEL--DLT*HTRWCTNQHVVCRTHVEKTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGA--QTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
            W+ K K KEDGS+ R++AR+VAQG+SQ +  D+ E  + VAR ++LRT+ +LA E+D E   MDV  A++N  ++ +++++ P   V+P   D  ++ +L+K +YGLKQS R WN+TLD +L   G  +S  + C+Y+   + DGG  + ++  VYVDD++ ++   + ++  K  +++RF++ D G +       Y +  L+      RV T S R   + VL+  G+E   P+         P+    N       SC          T  + W   + V+   +++ T  +   +       L     S   +W+  G I   +L   C   +V N        W  K     A  S   +Y   +   +    E ++ +  L  +GF  R   T+FEDN+  I L+K +    +TKHI +  H +RE ++ + + + Y +T D  ADILTKGL+R  +++L
Sbjct:   67 WVLKVKRKEDGSIDRFKARVVAQGYSQTKGADYDEVFSPVARHTSLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPD--YLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKSVKKDGGRISFVILGVYVDDIIPVSNDIQMLNSEKKALSERFKMDDRGEV------HYLLRMLIKRDREARVTTISQRNYVERVLSKFGMESCKPV-------STPLEPGTNDFKTRYLSCSGSTFTIYGKTWQSHWIGVKRVL--RYLKGTLDYGLKYSADENPTLVGYSDS---DWA--GDINTRRLTS-CYVFQVANSTVS----WSSKRQRTVAKSSTEAEYIALSLATQ----EAIWLQRPLYDVGFKIRKPITIFEDNQGTIELAKNAKYHNRTKHIDICHHFVRERVQSKEINVVYCRTDDMKADILTKGLARSSYEKL 500          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9KES8_PARCT3.350e-4627.98Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9HZ03_PARCT3.860e-4526.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT4.020e-4526.95Retrovirus-related Pol poly from transposon TNT 1-... [more]
Q7XTU6_ORYSJ2.560e-4430.21OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs... [more]
UPI00193CA7335.900e-4428.97uncharacterized protein LOC105202753 n=1 Tax=Solen... [more]
J9KJ72_ACYPI6.660e-4327.72Integrase catalytic domain-containing protein n=1 ... [more]
J9M5U1_ACYPI1.900e-4227.52Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
A0A401H123_9APHY2.770e-4229.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A5S6Q3I8_TRIMR4.050e-4228.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9LDA1_PARCT5.280e-4229.68Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16015contigH-paniculata_contig16015:134..1689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1466
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16015.3496.1prot_H-paniculata_contig16015.3496.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16015 1013..1456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.3661857-UTR-H-paniculata_contig16015:133..7801622929282.3661857-UTR-H-paniculata_contig16015:133..780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16015 134..780 -
1691480800.0274227-UTR-H-paniculata_contig16015:133..7801691480800.0274227-UTR-H-paniculata_contig16015:133..780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16015 134..780 -
1622929282.3856382-UTR-H-paniculata_contig16015:870..10121622929282.3856382-UTR-H-paniculata_contig16015:870..1012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16015 871..1012 -
1691480800.042544-UTR-H-paniculata_contig16015:870..10121691480800.042544-UTR-H-paniculata_contig16015:870..1012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16015 871..1012 -
1622929282.4371219-UTR-H-paniculata_contig16015:1456..16891622929282.4371219-UTR-H-paniculata_contig16015:1456..1689Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16015 1457..1689 -
1691480800.062868-UTR-H-paniculata_contig16015:1456..16891691480800.062868-UTR-H-paniculata_contig16015:1456..1689Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16015 1457..1689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.40176-CDS-H-paniculata_contig16015:1012..14561622929282.40176-CDS-H-paniculata_contig16015:1012..1456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16015 1013..1456 -
1691480800.0552628-CDS-H-paniculata_contig16015:1012..14561691480800.0552628-CDS-H-paniculata_contig16015:1012..1456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16015 1013..1456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16015.3496.1

>prot_H-paniculata_contig16015.3496.1 ID=prot_H-paniculata_contig16015.3496.1|Name=mRNA_H-paniculata_contig16015.3496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRD
IPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDG
GETNLLVTVYVDDLVIAGRREKVDEFKHNITQRFRIKDLGSLLRVWE*
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mRNA from alignment at H-paniculata_contig16015:134..1689-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16015.3496.1 ID=mRNA_H-paniculata_contig16015.3496.1|Name=mRNA_H-paniculata_contig16015.3496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1556bp|location=Sequence derived from alignment at H-paniculata_contig16015:134..1689- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGTACGGCAATGGAAGAAGAATGGGGGGCATTGGTGGAAAATGGGAC ATGGGAAAGCGAAGACCCGGGTAGGTTATCGGCAGGGTGGAAGGCGATTC GTACGAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCAC GCTACGAAGCGCGACTGGTAGCTCAAGGTTTTTCACAGGCGGAGAGTGAA GATTTCTTTGAAGCCAGTGCCCTCGTAGCTCGCATGTCGACGCTACGTAC TGTTTTTAGCCTGGCCGCCGAACATGATTTTGAATTTGAAGGCATGGACG TAGATGCGGCGTACATGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAG CTACCCCCCGAGGTTTCCCCTTTCTCCCGAGACATACCGTTTGTGCACCG CCTGCGTAAATGCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATA ACACTCTTGACGATTTTCTTGTTGGGATAGGACTCGACCGTTCTACTACC AACTCATGCTTGTACATTTCCCGCGACGATGGGGGAGAAACAAACCTTCT GGTGACCGTCTATGTTGACGACCTGGTCATTGCTGGGCGTCGTGAGAAAG TAGATGAGTTCAAGCATAACATAACTCAGCGTTTTCGGATAAAAGACTTG GGCTCTCTCTTGCGCGTGTGGGAATAGAAGTACGACGTGACCGCCCTAAT GGTACCATAACCATCTCGCAGAGTAGCAACATCCGCGAGGTACTAAAAAG ATACGGTTTTGACGGGTGTCGAGGAGCACCCACCCCTGTAGAGAGAAAAG TGAAGATTTCGGCACCCGGGTCCGCCGACAAGCCCTCCGAACCGAAGTCA CTTGGAGCTATACTGTCGGACATGGGCGCAAGAGTACAAGAAAACAGCAG AGAGAGAAGTGGCAATTCAACTGAATTCAGAGGCATGATAGGATCACTCA TGTCCGCCTCGACAGGAACTAGATCTGACATAGCATACGCGGTGGTGCAC CAACCAGCATGTCGTATGCAGGACCCATGTCGAGAAGACTTCAGTACATG CAAGCGTATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGTATTACGT TCGGCGGTAAGAGAATGGTCACGGTCTGGAAGGATTCGTTGATGCCAATT GGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGATACGTTTTCAAG CTTAACGGTGGTGCGATAAGTTGGTGATCTAGGAAGCAACAGTTAGTCAC GTGGTCCAGTACAGAGGCAGAGCACGTTGCTGCAGGAGAAGCGGGAAGGA GACGGTATATTTTAGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGG GGAGCACGACGTTGTTTGAGGACAATAAATCAGCTATCAATCTCAGTAAG GGATCTGGCGCACAAACAAAGCATATCGGAGTGCGCTGGCACGGAATTCG AGAGTGGATTCGGGAAGAAGTATTGGCATTGAAATACGTGCAGACCGGTG ATCAATTTGCTGACATTTTAACGAAAGGACTAAGCAGAGTAAAGTTTCAG AGACTG
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Coding sequence (CDS) from alignment at H-paniculata_contig16015:134..1689-

>mRNA_H-paniculata_contig16015.3496.1 ID=mRNA_H-paniculata_contig16015.3496.1|Name=mRNA_H-paniculata_contig16015.3496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig16015:134..1689- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGCTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTTGA
ATTTGAAGGCATGGACGTAGATGCGGCGTACATGAACGCCCCGGTAGAAG
AAGAGCTGTTTGTTAAGCTACCCCCCGAGGTTTCCCCTTTCTCCCGAGAC
ATACCGTTTGTGCACCGCCTGCGTAAATGCCTGTACGGCCTCAAGCAGAG
CGGCCGAAACTGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGAC
TCGACCGTTCTACTACCAACTCATGCTTGTACATTTCCCGCGACGATGGG
GGAGAAACAAACCTTCTGGTGACCGTCTATGTTGACGACCTGGTCATTGC
TGGGCGTCGTGAGAAAGTAGATGAGTTCAAGCATAACATAACTCAGCGTT
TTCGGATAAAAGACTTGGGCTCTCTCTTGCGCGTGTGGGAATAGATGTCG
ACGCTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTTGAATTTGA
AGGCATGGACGTAGATGCGGCGTACATGAACGCCCCGGTAGAAGAAGAGC
TGTTTGTTAAGCTACCCCCCGAGGTTTCCCCTTTCTCCCGAGACATACCG
TTTGTGCACCGCCTGCGTAAATGCCTGTACGGCCTCAAGCAGAGCGGCCG
AAACTGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCGACC
GTTCTACTACCAACTCATGCTTGTACATTTCCCGCGACGATGGGGGAGAA
ACAAACCTTCTGGTGACCGTCTATGTTGACGACCTGGTCATTGCTGGGCG
TCGTGAGAAAGTAGATGAGTTCAAGCATAACATAACTCAGCGTTTTCGGA
TAAAAGACTTGGGCTCTCTCTTGCGCGTGTGGGAATAG
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