mRNA_H-paniculata_contig16015.3496.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 181 bits (458), Expect = 3.350e-46 Identity = 136/486 (27.98%), Postives = 235/486 (48.35%), Query Frame = 3
Query: 105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRRE-KVDEFKHNITQRFRIKDLGSLLRVWE*KYDVTALMVP*P-SRRVATSARY*KDTVLT--GVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQELDLT*HTRWCTNQHVVCRTHVEKTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRG------PKVHNRIRFQA*RWCDKLVI*EATVSHVVQ-------YRGRARCC-------------RRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSG--AQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
+W+F+ K DG+V ++ARLVAQGFSQ +D+ E + VAR ++RTV +LAA+H + MDV A++N ++EE+++K ++ V RLR+ +YGLKQS R WN+ LD L +G ++T + C+Y+ +++GGE ++ VYVDD+++AG+ + K++E K + ++F++KD+G L Y + ++P P S+ + +VL G+E P + +N + Q +D + C H++ T + + +S + S W RI G R G + + + W L ++T +V Q +R + + C + +E V+ ++LL + G + EDN++AI ++K + + KHI +++H IRE + + L+Y T + ADI TKGLS V+F +L
Sbjct: 29 KWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKE-HLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQL------HYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKP-----------ASTPVNPGTKLKKAADDSQRVDQVNYQ--CAVGHLL----YLSTKTRPDIAYAVSDVARFSA-DPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKL 487
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 177 bits (449), Expect = 3.860e-45 Identity = 126/475 (26.53%), Postives = 231/475 (48.63%), Query Frame = 3
Query: 105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNITQRFRIKDLGSL------------LRVWE*KYDVTALMVP*PSRRVATSARY*KDT---VLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQELDLT*HTRWCTNQHVVCRTHVE---KTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSG--AQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
+W+FK K DGS+ R++ARLVAQGFSQ D+ E + V R ++RTV +L+ + + MDV AA++N +E+E+++K P ++ +L K LYGLKQS R WN+ LD+ L IG ++ ++ C+Y+ +DG +V ++VDD+++AG+ EK+ + K +I +RF++KD+G L +VW + TA ++ D +++ +E+ +E+ + + L+S D + + + TN+H + K +V+ + + S + + +W+ L R +I A W K A + +Y + + +E ++ R+LL + T++EDN+SAI +SK ++KHI ++++ +R+ + ++ L + Y TG AD+ TKG+ + +F++L
Sbjct: 193 KWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANP---TNEHWTAVKRIFRYLKGTVNYGLLY--SENANPDCVGFSDADWAGD-------LNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSA----AAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKL 648
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT) HSP 1 Score: 180 bits (456), Expect = 4.020e-45 Identity = 128/475 (26.95%), Postives = 231/475 (48.63%), Query Frame = 3
Query: 105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRR-EKVDEFKHNITQRFRIKDLGSL------------LRVWE*KYDVTALMVP*PSRRVATSARY*KDT---VLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQELDLT*HTRWCTNQHVVCRTHVE---KTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSG--AQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
+W+FK K DGS+ R++ARLVAQGFSQ D+ E + V R +RTV +L+ + + MDV AA++N +E+E+++K P ++ V +L K LYGLKQS R WN+ LD+ L IG ++ ++ C+Y+ +DG +V ++VDD+++AG+ EK+ + K +I +RF++KD+G L +VW + TA ++ D +++ +E+ +E+ + + L+S D + + + TN+H + K +V+ + + S + + +W+ L R +I A W K A + +Y + + +E ++ R+LL + T++EDN+SAI +SK ++KHI +++H +R+ + ++ L + Y TG AD+ TKG+ + +F++L
Sbjct: 807 KWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANP---TNEHWTAVKRIFRYLKGTVNYGLLY--SENANPDCVGFSDADWAGD-------LNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSA----AAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKL 1262
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ) HSP 1 Score: 177 bits (450), Expect = 2.560e-44 Identity = 145/480 (30.21%), Postives = 232/480 (48.33%), Query Frame = 3
Query: 105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRREK-VDEFKHNITQRFRIKDLGSLLRVWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSC-PPRQELDLT*HTRWCTNQH--------VVCRTHVEKTSVH-ASVFFVISVLCLT----------SVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQY---RGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGS--GAQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
+W++K K G++ +++ARLVA+G+ Q + DF E A VARM T+R + +LAA+ +E MDV +A++N +EEE++V PP + V +LRK LYGL+Q+ R WN LD+ L+ + ++S T S +Y+ G++ L+V VYVDDL+I G ++K +D FK + QRF + DLG L Y ++ ++ SA K TG+E P + P+ +L C P + + R+ N V R + TS H A+V ++ + T V + + +S S + G K + F R+ L+ ++ VV + + ++ L+ + G TTL DNKSAINL K ++KHI R+H IRE + ++ +A++YV + DQ AD+LTK + RV+F+ L
Sbjct: 958 KWVYKLKKDPSGAIVKHKARLVAKGYVQQQGVDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQPPGFDD-KTNASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAVYVRGV--GDSKLIVGVYVDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSY-----YLGMEVVQKGEGIFLSQSAYAGKILEKTGMEGCNPT-------QVPMEARLKLSKEGTGECVDPTEYRSIVGSLRYLVNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHILRYISGTIKTGCWYGREEVGNAKLVGFSDS------DMAGDLDDRKSTTGVLF---RYGGSLISWQSQKQKVVALSSCEAEYIAATTAACQGIWLSRLIAELLDAEPGQTTLMIDNKSAINLCKNPVFHDRSKHIDTRYHFIRECVEKKQIAVEYVCSEDQLADLLTKPVGRVRFKEL 1413
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: UPI00193CA733 (uncharacterized protein LOC105202753 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193CA733) HSP 1 Score: 176 bits (445), Expect = 5.900e-44 Identity = 144/497 (28.97%), Postives = 226/497 (45.47%), Query Frame = 3
Query: 45 WDMGKRRPG*VIGRVEGDSYEWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRREKV-DEFKHNITQRFRIKDLGSLLRVWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQE----------LDLT*HTRWCTNQHVVCRTHVEKTSVH--ASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNR--------IRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINL--SKGSGAQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
W++ PG + + +W+FK KL +G + ++ARLVA+GFSQA ED++E A V + T+R + +AA+ +DV +AY+N +EEE+F++ PP ++ V RLRK LYGLKQS R WN + LV IG CLY ++ G T V +YVDDL++AG K+ +E ++ + F IKDLG DV + R+ S+ + +T + E L K LNS + P + + T ++CR VEK + +V V+ L T + +++ S C + G K + + W + AT S +Y + + KE ++FR+LL + +G T + EDN+ I L S GA+TKHI + H IR+ ++++ + Y T AD+LTK L++ +FQ L
Sbjct: 367 WELTDLPPGKKV-----TTCKWVFKAKLNGEGRIYTHKARLVARGFSQAYGEDYYETFAPVVKHETIRVLLCIAAQKGLHVRHLDVKSAYLNGQLEEEIFLEQPPGFQKSGQESK-VLRLRKSLYGLKQSARAWNKRATEALVQIGFRPGKAEHCLYTRKERNGTTTY-VLLYVDDLLVAGTSTKITEEVSRDLQEYFDIKDLG----------DVNHYLGVQIKRQADGSSLLNQKGKITKILEEYGLLEPKPAATPMETNFLNSRSDDSAKIPNNNKYRKAIGSLLYIATVSRPDIATAVGILCR-RVEKPTKRDWEAVKRVMRYLAFT--INKSLQLSSTDTMELECFVDSDWAGDKTDRKSTSGYVFCLGKGTVAWSSRKQTSVATSSTEAEYIAASH----ASKEVLWFRQLLKDMNIPRKGPTKINEDNQGCIRLIESDRCGARTKHIDICHHKIRDLREKKIIDVCYCPTEAMVADLLTKPLAKERFQEL 839
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI) HSP 1 Score: 173 bits (439), Expect = 6.660e-43 Identity = 135/487 (27.72%), Postives = 234/487 (48.05%), Query Frame = 3
Query: 105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRRE-KVDEFKHNITQRFRIKDLGSL-----LRVWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSC--PPRQELDLT*HTRWCTNQHV------VCRTHVEKTSVHASVFFVI---------SVLCL------TSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRG--RARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGA--QTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
+W+FK K GSV +Y+ARLVAQGFSQ E D+++ + VA+++TLRT+ ++A + ++ + +DV A++ + E+++++ P ++ ++ D+ F +L K LYGLKQ+ + W+ D+++ +GL++S ++ CLYI ++ + + +YVDD++IAG K+ E K + + F ++D G L L++ YD T + +Y +D + ++ P+ +LN E C P RQ + + + + CR + H + + + LC T ++ +W+ S R G KV N + W K A S +Y A C E ++ R+LL + G LFEDN+ AI+LS ++KHI + H +RE ++E ++ LKY+ T +Q AD+LTKGL +F+RL
Sbjct: 818 KWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLN-YNSDMIF--KLNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKI---NYDKTV------GKLYINQTQYLEDVLKKFNMDNCNT------ISTPIESKLNIEEDNKQECNQPYRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLF---KVFNCLVS----WSTKRQPTVALSSTEAEYMAVSNATC------EAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEGLIELKYIPTSNQLADLLTKGLGNERFKRL 1273
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: J9M5U1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9M5U1_ACYPI) HSP 1 Score: 172 bits (436), Expect = 1.900e-42 Identity = 134/487 (27.52%), Postives = 234/487 (48.05%), Query Frame = 3
Query: 105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRRE-KVDEFKHNITQRFRIKDLGSL-----LRVWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVAIQLNSEA**DHSC--PPRQELDLT*HTRWCTNQHV------VCRTHVEKTSVHASVFFVI---------SVLCL------TSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRG--RARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGA--QTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
+W+FK K GSV +Y+ARLVAQGFSQ E D+++ + VA+++TLRT+ ++A + ++ + +DV A++ + E+++++ P ++ ++ D+ + +L K LYGLKQ+ + W+ D+++ +GL +S ++ CLYI ++ + + +YVDD++IAG K+ E K + + F ++D G L L++ YD T + +Y +D + ++ P+ +LN E C P RQ + + + + CR + H + + + LC T ++ +W+ S R G KV N + W K A S +Y A C E ++ R+LL + G LFEDN+ AI+LS ++KHI + H +RE ++EE++ LKY+ T +Q AD+L+KGL +F+RL
Sbjct: 1527 KWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLN-YNSDM--ILKLNKSLYGLKQASKCWHERFDNYIAKLGLKQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKI---NYDKTV------GKLYINQTQYLEDVLKKFNMDNCNT------ISTPIESKLNIEEDNKQECNQPYRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYFKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLF---KVFNCLVS----WSTKRQPTVALSSTEAEYMAVSNATC------EAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEELIELKYIPTSNQLADLLSKGLGNEQFKRL 1982
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY) HSP 1 Score: 171 bits (434), Expect = 2.770e-42 Identity = 147/498 (29.52%), Postives = 225/498 (45.18%), Query Frame = 3
Query: 105 EWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDD-LVIAGRREKVDEFKHNITQRFRIKDLGS----------------LLRVWE*KYDVTALMVP*PS--RRVATSARY*KDTVLTGVEEHPP---------L*REK*RFRHPVAIQLNSEA**DHSCPPRQE-----LDLT*HTRWCTNQHVV-CRTHVEKTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNR---------IRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSG--AQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQR 1463
+W+FK K DG + +Y+ARLVA+GF+Q E DF E A VA+ +++RT+ +LAA+ D E MDV +A++N ++EE+++K+P S F R + +L K LYGLKQ+GR W + +G R ++ ++ DDG L++ +YVDD L+++ V K ++ RF + DLG +L + + +Y L + R V+T + V E P L R +A + + + H+ P +E + + + R ++ +V C T EK +LR +W+ + V+NR I A W K A S +Y A KE V+ R L IG +G T L DN+SAI LSK + +TKHI VR+H IRE + +YV TG+Q AD+LTKGL R K ++
Sbjct: 650 KWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVP---SGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDG--ILLIIAIYVDDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEIARDRPRRVLELSQHQYVEKCLAQHGMANCRPVSTPMAQNQKLVKLSEAEIDPKPYQSALGSLMYAMIGTRPDLAFTVGALS--QHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEK----------------KPLLRYVDADWAAN----------------VNNRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAH----GTKEAVWLRAFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHEK 1104
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR) HSP 1 Score: 167 bits (423), Expect = 4.050e-42 Identity = 142/502 (28.29%), Postives = 227/502 (45.22%), Query Frame = 3
Query: 45 WDMGKRRPG*VIGRVEGDSYEWIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYISRDDGGETNLLVTVYVDDLVIAGRREKVD-EFKHNITQRFRIKDLGSLLR--------------VWE*KYDVTALMVP*PSRRVATSARY*KDTVLTGVEEHPPL*REK*RFRHPVA--IQLNSEA**DHSCPPRQELDLT*HTRWCTNQHVVCRTHVEKTSVH--ASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIR----FQA*R----WCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINL--SKGSGAQTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQR 1463
WD+ PG + S +W+FK K +G Y+ARLVA+GFSQ ED+ E A V + T+R + SLAA +DV AAY+N+P+EEEL+VK PP ++ V LRK LYGLKQS R WN D L +G +++ + CL+ ++ G ++ +YVDDL++ G K+ E + + F+ KDLG + + + + L+ + + L+ +E PP+ + ++R + + + + + D + P +CR HVEK + +V V+ L T + +R S G C + G K + FQ + W + A S +Y + CR E ++ R+LL +G + T + EDN++ I + S+ GA+TKH+ V H +R+ + + L+Y + ADILTK L + KF R
Sbjct: 60 WDLVDLPPG-----KKPISLKWVFKVKPNSEGQADTYKARLVARGFSQRYGEDYDETFAPVVKHDTVRVLLSLAAAQKLHVRHLDVKAAYLNSPLEEELYVKQPPGFEVQGQEHK-VLLLRKSLYGLKQSARAWNKMATDTLTSLGFEQAMADHCLFSKKEKNGSRTYIL-IYVDDLLVVGATPKITKEVGIQMDKFFQTKDLGEVKNYLGIQIEREGDGSILLHQRNKIEQLLEQYGLMECKPAPTPMETGFLSVNQESPPM-PDNTKYRQAIGSLLYVATVSRPDIAAPVG----------------FLCR-HVEKPTEADWKAVKRVMRYLAATKYM--TLRLSSAGGIDLQCYVDADWAGDKADRKSTTGFVFQLGKNTVAWSSRKQSVVALSSTEAEYLAVSHACR----ELLWLRQLLKDLGIAVKDPTIIHEDNQACIKMVNSERYGARTKHVDVCHHHVRDLRAQGTIKLQYCPSDKMRADILTKPLCKDKFSR 530
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Match: A0A7D9LDA1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LDA1_PARCT) HSP 1 Score: 166 bits (420), Expect = 5.280e-42 Identity = 138/465 (29.68%), Postives = 233/465 (50.11%), Query Frame = 3
Query: 108 WIFKRKLKEDGSVARYEARLVAQGFSQAESEDFFEASALVARMSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPE-VSPFSRDIPFVHRLRKCLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYIS--RDDGGETNLLVT-VYVDDLV-IAGRREKVDEFKHNITQRFRIKDLGSLLRVWE*KYDVTALMVP*PSRRVAT-SARY*KDTVLT--GVEEHPPL*REK*RFRHPVAIQLNSEA**DHSCPPRQEL--DLT*HTRWCTNQHVVCRTHVEKTSVHASVFFVISVLCLTSVLRSAVREWSRSGRIR*CQLGGRCRGPKVHNRIRFQA*RWCDKLVI*EATVSHVVQYRGRARCCRRSGKETVYFRELLGSIGFGCRGSTTLFEDNKSAINLSKGSGA--QTKHIGVRWHGIREWIREEVLALKYVQTGDQFADILTKGLSRVKFQRL 1466
W+ K K KEDGS+ R++AR+VAQG+SQ + D+ E + VAR ++LRT+ +LA E+D E MDV A++N ++ +++++ P V+P D ++ +L+K +YGLKQS R WN+TLD +L G +S + C+Y+ + DGG + ++ VYVDD++ ++ + ++ K +++RF++ D G + Y + L+ RV T S R + VL+ G+E P+ P+ N SC T + W + V+ +++ T + + L S +W+ G I +L C +V N W K A S +Y + + E ++ + L +GF R T+FEDN+ I L+K + +TKHI + H +RE ++ + + + Y +T D ADILTKGL+R +++L
Sbjct: 67 WVLKVKRKEDGSIDRFKARVVAQGYSQTKGADYDEVFSPVARHTSLRTLLALANEYDLEVHQMDVRTAFLNGDIDCDIYMQQPEGFVNPDKPD--YLCKLQKSIYGLKQSARCWNDTLDGYLKSRGYRKSGADGCIYVKSVKKDGGRISFVILGVYVDDIIPVSNDIQMLNSEKKALSERFKMDDRGEV------HYLLRMLIKRDREARVTTISQRNYVERVLSKFGMESCKPV-------STPLEPGTNDFKTRYLSCSGSTFTIYGKTWQSHWIGVKRVL--RYLKGTLDYGLKYSADENPTLVGYSDS---DWA--GDINTRRLTS-CYVFQVANSTVS----WSSKRQRTVAKSSTEAEYIALSLATQ----EAIWLQRPLYDVGFKIRKPITIFEDNQGTIELAKNAKYHNRTKHIDICHHFVRERVQSKEINVVYCRTDDMKADILTKGLARSSYEKL 500 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16015.3496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16015.3496.1 >prot_H-paniculata_contig16015.3496.1 ID=prot_H-paniculata_contig16015.3496.1|Name=mRNA_H-paniculata_contig16015.3496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp MSTLRTVFSLAAEHDFEFEGMDVDAAYMNAPVEEELFVKLPPEVSPFSRDback to top mRNA from alignment at H-paniculata_contig16015:134..1689- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16015.3496.1 ID=mRNA_H-paniculata_contig16015.3496.1|Name=mRNA_H-paniculata_contig16015.3496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1556bp|location=Sequence derived from alignment at H-paniculata_contig16015:134..1689- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16015:134..1689- >mRNA_H-paniculata_contig16015.3496.1 ID=mRNA_H-paniculata_contig16015.3496.1|Name=mRNA_H-paniculata_contig16015.3496.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig16015:134..1689- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |