mRNA_H-paniculata_contig16011.3495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16011.3495.1
Unique NamemRNA_H-paniculata_contig16011.3495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16011.3495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16011contigH-paniculata_contig16011:1668..4648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1001
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16011.3495.1prot_H-paniculata_contig16011.3495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16011 1728..4541 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.2822242-UTR-H-paniculata_contig16011:1667..17271622929282.2822242-UTR-H-paniculata_contig16011:1667..1727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16011 1668..1727 -
1691480799.9843884-UTR-H-paniculata_contig16011:1667..17271691480799.9843884-UTR-H-paniculata_contig16011:1667..1727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16011 1668..1727 -
1622929282.3223364-UTR-H-paniculata_contig16011:4541..46481622929282.3223364-UTR-H-paniculata_contig16011:4541..4648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16011 4542..4648 -
1691480800.0138962-UTR-H-paniculata_contig16011:4541..46481691480800.0138962-UTR-H-paniculata_contig16011:4541..4648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16011 4542..4648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929282.2955606-CDS-H-paniculata_contig16011:1727..25491622929282.2955606-CDS-H-paniculata_contig16011:1727..2549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16011 1728..2549 -
1691480799.994797-CDS-H-paniculata_contig16011:1727..25491691480799.994797-CDS-H-paniculata_contig16011:1727..2549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16011 1728..2549 -
1622929282.310336-CDS-H-paniculata_contig16011:4529..45411622929282.310336-CDS-H-paniculata_contig16011:4529..4541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16011 4530..4541 -
1691480800.0043833-CDS-H-paniculata_contig16011:4529..45411691480800.0043833-CDS-H-paniculata_contig16011:4529..4541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16011 4530..4541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16011.3495.1

>prot_H-paniculata_contig16011.3495.1 ID=prot_H-paniculata_contig16011.3495.1|Name=mRNA_H-paniculata_contig16011.3495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp
MMLDDMAMFDGSSTGGEAGGALSPLPYPSEHSPGRPICYASQPPIRAPAG
TAPLEIEGPAPRAITTAAPAAGQEHHGNGEMKTVGDTTTLTQDKLPAAAA
TGAGIVGLPGDELVHVVAAAPAAAAAAAASASGASDNGNSSCHRGAPVAV
TPNGSQASDVHAMASELVGGAGPPLAAAAAAAAAPSIGPVDSGLADCSLV
DSGFADCSLVDGGLVGSDVVDNGSAVAGDGLEGLADGGTVGGGGEEVADG
MLLGNMGISVGEGDAAVRDSGTGIGSS*
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mRNA from alignment at H-paniculata_contig16011:1668..4648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16011.3495.1 ID=mRNA_H-paniculata_contig16011.3495.1|Name=mRNA_H-paniculata_contig16011.3495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2981bp|location=Sequence derived from alignment at H-paniculata_contig16011:1668..4648- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGTGAGCGAGTTGGGCGAATTGGGAGCGCGAGAGGATGAGGCGCTG
TCCAAGATAGACAGCCTTGGCTATCAGCTGGCGCAGCTGCTGGACAACAA
CGACACGATGATGCTTGATGTGAGTCGCAGGCAGCAGCAGCAGCGGCGGC
GGCGGCGGCGGCGAGGCTGCCCCCGTCTTCGTTGCCGCACGTTTTTTATG
CTGGCACTATGTTTCTCGTGTCTTGGCCGTCCGCGCGTGTAAGGATTAAT
TTTGTTTTTGTATGCAATTCTCGCTATGTGTGGGAAATCTTGAACTGAGT
AGCCAACTAACTGTGCAGTGGACGTGCCGTTTTAAGGCGAAGATAACTGC
CATATTAGGAAAGGTGCCTTGTTCCGTTTTTGAGACGCAAGGTGCCTTAT
TCTTAGCGCACACGGCGTCTGGAGGGAGGTAAGGGAGACAAGTTGGCCAT
ATTCCTTAATAACTGCAAGTGTTTTCGGTCACCTTGGGTCTCTTCGCTTT
GAGGCGGCGGAATCGAGTGGTCAATTAGGGCACGTTGTGCCTCGAGGTGG
AGAGCGTTTCACTCCAACGCACTTTGTGCTTCAGAGTGATACGAAGGGTT
GCACACAGAAAATAGGATGCCAAGGCAGGGGGGAGGTGCCTGAGAAAGAG
CGCATTCACTGTACTGCAAAGGTGTATTGGATCGCGGTAGTAGGAGGGAT
TTGGGCCGTAATAGATGACGATCGACCACACGTAGTTATTCATTTGTTTT
TTCTGGGGTAAATTTCGATGTGCTGGAATAACAGGAGCTTAACTTTCAGT
AAGGTCGAGAGTGGACTCCTGGACATTATTAGCGTTTGTGGCCTGTGTTT
TGCACGACCTAGTCGTTGTACACGCCGACGAACTCGCGAAGTCAACACGC
ACGTTAAATAATGGCGATACGAAAACTCCTTTGGCGCTGAGAAGTGATGA
AGCATGAGGGACCGAGGAGGACATATCCTTGCTCGGCGCCACATAGCTAG
CCGCCGTAAAGTCTAGTAGTGCACTGCAACAACCGTTGACCTTTCTTCGT
CAATTGTTTTGACACAAACAAAGGAAATATATGTTTGTAGGGATGGTGCT
CGCACCGATGTTTATATCCTGCAATCCTAGCCCTTAACCCTATAGCCCTA
GGTCCTACTGCAACCCCAACCCTAGCCCTAGCCCTGCTCCTGATCCCCTT
CAGTCTCGGATCTTCTTCCCTTGTTGTTTCCTTGTTCTATCGGTTGTCGT
CAACCACTAAACGGGTACTTCCTCATTGCCACCGATAAGTCTCGTTATGA
TATGTAGACGTACTTCGGTATGGAAGCATCGGATAGAGGTTTTTTTTTGC
CTTAGCGTTTCGGGAGTTGAAAAAAAAAGAAAAAAAAGGCTCTTTATGAT
CATGTAGGCAGCTCAACATTCCCGTTTAAAAAGAAGACAAATAGAAAAAC
CATATTTGCTAAAAACAATTCGTGGAAATTGGCGAAGTCAACTGGGCGCG
CGCGCGCGCTGCGCGAAATGAATACCTTGGCTGAAACATACCCGTTTTTT
TTCTTTTCATTTTTTCCCAACGGAACAAACGTGAAATTGGGGGGGGAAAT
ATCATATTTGGTCAAAACTAGCCTAACCGTGAGCGATCATTAGTCCTGAT
ACACACATTGAAAGACACTTTGGAATAGCTCACATGAACCTGTTAAGTTT
TAGCTTCCCGTCGATATCAACAAAGCTCTGTGAGTCTCCGTAGTAGGTGA
GTTATGACTCGCCACATATAACGACCCTACCTTGTGGCACGGAGGAAGTA
TATCGTACAACTCTGTCATTGCACCAAGCGCCAGGCAAAAGTAGCCTCGT
CCGTGACAGATCGCATGCTGGTGATATCAAAGGGACGAGGGAGAGGTTGT
AATGAAAAGGTCGTGCTTGTCAGATCGCACCGTGCAACATTAGAGGGGGG
TGCGACCTTCGAGAGGGTGCGATAAGAAGGGGTTATACGGTAATATATCA
ATCATGGTGCTATCTACAAGTCGTGCATTAAGTACCAAAACTAAATAATT
TATCGACGCCATAAATTTCTGTATCTGTACTTGGACTTTCGACAAGCAGG
ACATGGCCATGTTCGATGGCTCCAGCACGGGAGGCGAGGCTGGGGGAGCG
CTGTCACCTTTGCCATACCCATCCGAGCATAGTCCCGGGAGGCCTATTTG
TTATGCTTCCCAACCCCCTATTCGTGCTCCGGCGGGAACTGCCCCTCTTG
AAATCGAAGGCCCAGCGCCCAGGGCAATCACCACCGCGGCGCCGGCGGCG
GGACAAGAACACCACGGCAATGGTGAAATGAAAACGGTCGGGGACACGAC
AACACTAACGCAAGACAAGTTGCCTGCTGCTGCCGCCACGGGGGCAGGAA
TAGTAGGTCTACCGGGGGATGAACTCGTCCATGTTGTTGCCGCAGCGCCT
GCTGCTGCTGCTGCTGCTGCTGCTAGTGCTTCTGGGGCGAGCGACAACGG
CAACTCTTCTTGCCATCGTGGAGCACCCGTTGCTGTGACCCCCAACGGTA
GTCAAGCGAGCGATGTCCACGCCATGGCATCTGAACTAGTTGGAGGGGCG
GGACCGCCGCTGGCTGCGGCAGCGGCGGCAGCGGCGGCACCGAGTATCGG
TCCCGTGGATAGCGGGTTGGCGGATTGCAGTTTGGTGGATAGCGGATTTG
CCGATTGCAGCTTGGTCGATGGCGGATTGGTAGGTAGTGATGTGGTGGAT
AACGGTAGTGCTGTTGCAGGTGATGGTTTGGAAGGTCTTGCTGATGGGGG
GACTGTTGGTGGTGGTGGTGAGGAAGTCGCGGATGGAATGCTCTTGGGGA
ATATGGGGATAAGTGTTGGAGAGGGCGATGCGGCGGTACGGGATAGTGGG
ACCGGGATTGGTAGTAGCTAATGCAGGATGATAGCATACACTGAAGAAAG
GAGATATGATGTGTTTATAGAGGAGGGAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig16011:1668..4648-

>mRNA_H-paniculata_contig16011.3495.1 ID=mRNA_H-paniculata_contig16011.3495.1|Name=mRNA_H-paniculata_contig16011.3495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig16011:1668..4648- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTTGATATGATGCTTGATGACATGGCCATGTTCGATGGCTCCAG
CACGGGAGGCGAGGCTGGGGGAGCGCTGTCACCTTTGCCATACCCATCCG
AGCATAGTCCCGGGAGGCCTATTTGTTATGCTTCCCAACCCCCTATTCGT
GCTCCGGCGGGAACTGCCCCTCTTGAAATCGAAGGCCCAGCGCCCAGGGC
AATCACCACCGCGGCGCCGGCGGCGGGACAAGAACACCACGGCAATGGTG
AAATGAAAACGGTCGGGGACACGACAACACTAACGCAAGACAAGTTGCCT
GCTGCTGCCGCCACGGGGGCAGGAATAGTAGGTCTACCGGGGGATGAACT
CGTCCATGTTGTTGCCGCAGCGCCTGCTGCTGCTGCTGCTGCTGCTGCTA
GTGCTTCTGGGGCGAGCGACAACGGCAACTCTTCTTGCCATCGTGGAGCA
CCCGTTGCTGTGACCCCCAACGGTAGTCAAGCGAGCGATGTCCACGCCAT
GGCATCTGAACTAGTTGGAGGGGCGGGACCGCCGCTGGCTGCGGCAGCGG
CGGCAGCGGCGGCACCGAGTATCGGTCCCGTGGATAGCGGGTTGGCGGAT
TGCAGTTTGGTGGATAGCGGATTTGCCGATTGCAGCTTGGTCGATGGCGG
ATTGGTAGGTAGTGATGTGGTGGATAACGGTAGTGCTGTTGCAGGTGATG
GTTTGGAAGGTCTTGCTGATGGGGGGACTGTTGGTGGTGGTGGTGAGGAA
GTCGCGGATGGAATGCTCTTGGGGAATATGGGGATAAGTGTTGGAGAGGG
CGATGCGGCGGTACGGGATAGTGGGACCGGGATTGGTAGTAGCTAAGACA
TGGCCATGTTCGATGGCTCCAGCACGGGAGGCGAGGCTGGGGGAGCGCTG
TCACCTTTGCCATACCCATCCGAGCATAGTCCCGGGAGGCCTATTTGTTA
TGCTTCCCAACCCCCTATTCGTGCTCCGGCGGGAACTGCCCCTCTTGAAA
TCGAAGGCCCAGCGCCCAGGGCAATCACCACCGCGGCGCCGGCGGCGGGA
CAAGAACACCACGGCAATGGTGAAATGAAAACGGTCGGGGACACGACAAC
ACTAACGCAAGACAAGTTGCCTGCTGCTGCCGCCACGGGGGCAGGAATAG
TAGGTCTACCGGGGGATGAACTCGTCCATGTTGTTGCCGCAGCGCCTGCT
GCTGCTGCTGCTGCTGCTGCTAGTGCTTCTGGGGCGAGCGACAACGGCAA
CTCTTCTTGCCATCGTGGAGCACCCGTTGCTGTGACCCCCAACGGTAGTC
AAGCGAGCGATGTCCACGCCATGGCATCTGAACTAGTTGGAGGGGCGGGA
CCGCCGCTGGCTGCGGCAGCGGCGGCAGCGGCGGCACCGAGTATCGGTCC
CGTGGATAGCGGGTTGGCGGATTGCAGTTTGGTGGATAGCGGATTTGCCG
ATTGCAGCTTGGTCGATGGCGGATTGGTAGGTAGTGATGTGGTGGATAAC
GGTAGTGCTGTTGCAGGTGATGGTTTGGAAGGTCTTGCTGATGGGGGGAC
TGTTGGTGGTGGTGGTGAGGAAGTCGCGGATGGAATGCTCTTGGGGAATA
TGGGGATAAGTGTTGGAGAGGGCGATGCGGCGGTACGGGATAGTGGGACC
GGGATTGGTAGTAGCTAA
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