mRNA_H-paniculata_contig1601.3493.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1601.3493.1
Unique NamemRNA_H-paniculata_contig1601.3493.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1601.3493.1 vs. uniprot
Match: D8LRM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM2_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.240e-18
Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 AKEAAEKGASEARSRAEEEARRTSSLEDSLCRKEREMLVALERLDKLKLRLQDVERSAREGEDDLRSMVRQRESEVERLTRR 246
            AKE A++ A EAR RA+EE ++ SSLE+SLCRKE +ML ALERL++LK+R ++VE  AREGE+DLRS+VRQRESE+E LTRR
Sbjct:  760 AKETAQRSALEARLRADEETKKRSSLEESLCRKESDMLAALERLNQLKIRQKEVEEHAREGEEDLRSLVRQRESEIESLTRR 841
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1601.3493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRM2_ECTSI1.240e-1867.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1601contigH-paniculata_contig1601:21322..22934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size488
Cds size486
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1601.3493.1prot_H-paniculata_contig1601.3493.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1601 21324..22934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929281.8085716-CDS-H-paniculata_contig1601:21323..215641622929281.8085716-CDS-H-paniculata_contig1601:21323..21564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 21324..21564 -
1691480799.777293-CDS-H-paniculata_contig1601:21323..215641691480799.777293-CDS-H-paniculata_contig1601:21323..21564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 21324..21564 -
1622929281.8201554-CDS-H-paniculata_contig1601:21933..220221622929281.8201554-CDS-H-paniculata_contig1601:21933..22022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 21934..22022 -
1691480799.786057-CDS-H-paniculata_contig1601:21933..220221691480799.786057-CDS-H-paniculata_contig1601:21933..22022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 21934..22022 -
1622929281.8352997-CDS-H-paniculata_contig1601:22480..225651622929281.8352997-CDS-H-paniculata_contig1601:22480..22565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 22481..22565 -
1691480799.7965941-CDS-H-paniculata_contig1601:22480..225651691480799.7965941-CDS-H-paniculata_contig1601:22480..22565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 22481..22565 -
1622929281.8506594-CDS-H-paniculata_contig1601:22863..229341622929281.8506594-CDS-H-paniculata_contig1601:22863..22934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 22864..22934 -
1691480799.8043869-CDS-H-paniculata_contig1601:22863..229341691480799.8043869-CDS-H-paniculata_contig1601:22863..22934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 22864..22934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1601.3493.1

>prot_H-paniculata_contig1601.3493.1 ID=prot_H-paniculata_contig1601.3493.1|Name=mRNA_H-paniculata_contig1601.3493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
AKEAAEKGASEARSRAEEEARRTSSLEDSLCRKEREMLVALERLDKLKLR
LQDVERSAREGEDDLRSMVRQRESEVERLTRRNGVLSEALSRLTTETDQD
GPRMEQKGAASSRDGALQRTDISSTSLVSQTSRSLGGACGSAISFDQNGS
PIIPRLGTGHDL
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mRNA from alignment at H-paniculata_contig1601:21322..22934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1601.3493.1 ID=mRNA_H-paniculata_contig1601.3493.1|Name=mRNA_H-paniculata_contig1601.3493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1613bp|location=Sequence derived from alignment at H-paniculata_contig1601:21322..22934- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAAGGAAGCTGCAGAGAAGGGCGCGTCAGAAGCGCGGTCACGCGCCGA
AGAGGAAGCGAGAAGAACAAGGCAAGTTGTAAAACTTTGCAGAGGTTATA
AATATCCTTTGAATTTACGGTGCCTTGGCATACTTTCTTCTCAATATTTA
ATACCGACACACTTTACGTGGGCAAGATACATCAGCTTCACCCATGGAAA
ACGCTTGCCTGCGTCGTACCAGTGCACACCGTTAGTCGTCGGAGGTCATT
GCAGATTTTTCAGTGGACTACTGTCATTTTACTGGATTAACTAGCCTGCC
TTGAGTCCTGATTCCTGACATGCATCCCGTCGACCCTGTCGTTGTTGTAC
CAATCTCCCCCATCTTCAGCTCTCTGGAGGACTCGCTGTGCCGCAAAGAA
CGAGAGATGCTCGTTGCACTTGAACGACTCGACAAACTCAAGCTTCGCCT
GCAGGTATGGACTTTATTTGAGAGCTTGATCCAAAATAAGCTGCAAGGTG
CAGCACACCCAGATGAACACTGCGGAACAAGCAAAGGCTATACGGACAAA
GAAGAGCAGCACTTGCATCTAACGTAGACTAGCAGAGTTACAATCTGCCT
TCGAGATAGAGGGGAAGAAGTATCATTTCTAACCCTCATCATGCCACCTC
GCTCTACTGATGATACACTTGACACGTACATATTGTATTTTTCAGTAAAG
TCTATCGGGTGAGGCAGACTTCACGGTATTACACCCTTCACACCAGACGC
GGTTACGGCAACAATTTTAGCGACCAAGATTAGAAAATATCATGGATCAG
CACCGAAAGGTACGCTTCTGGAGACAATGCCCCCCACGTACGGCAGTTAG
CTAGCGCAGAAAAAGTGAAACGTGCCGAATTATTTTCCTTCCAAAACGAA
AATTTACACAAGGATGTGGAAAGAAGTGCTCGTGAAGGGGAGGATGATCT
AAGGAGCATGGTTCGCCAGCGAGAGTCAGAGGTCGAGCGGCTCACCAGAA
GGTCAGATTTTACGTGGACGTTGGGTAGTGTGCGTTGTGTGGAGTCGGCA
AAAATCAATCGTTTCGACTACTGAGATATTTTTCCCAGGCATTGAGTCCT
GGCACAGAAGCAAGCATTATAGGCTGGTACGCGTGCTTGAGGTATTTCTC
GGTACCCTGTCTTGTATCTAGACGGCTTCATCATACAACGTGAATAATTG
CGTGCCAATCGCTACCCGTCACAAGCCGTGATTCCCGTATGAGCACGCGT
CGCTGAGAAAAAGCTGCCATTAACTCGTTGCAATGCCATGTAACATGTTT
GCGTTCCTTTCGAGTCCGCAGACAACCACTGCCAACCTCCCCCTTCTTCG
TACCTACCGCTCTCTCACAGGAACGGGGTTTTGAGTGAGGCCTTGTCGCG
CCTTACGACGGAGACAGATCAAGACGGTCCCCGAATGGAGCAAAAGGGTG
CAGCATCGTCACGGGACGGGGCGCTACAGAGAACGGATATTTCATCCACG
TCGTTAGTGTCACAAACGAGTAGGTCGTTGGGCGGAGCTTGCGGTAGTGC
TATTAGCTTCGATCAAAACGGCTCCCCGATCATTCCGCGACTCGGAACAG
GGCACGATCTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1601:21322..22934-

>mRNA_H-paniculata_contig1601.3493.1 ID=mRNA_H-paniculata_contig1601.3493.1|Name=mRNA_H-paniculata_contig1601.3493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig1601:21322..22934- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAAGGAAGCTGCAGAGAAGGGCGCGTCAGAAGCGCGGTCACGCGCCGA
AGAGGAAGCGAGAAGAACAAGGCAAAGGAAGCTGCAGAGAAGGGCGCGTC
AGAAGCGCGGTCACGCGCCGAAGAGGAAGCGAGAAGAACAAGCTCTCTGG
AGGACTCGCTGTGCCGCAAAGAACGAGAGATGCTCGTTGCACTTGAACGA
CTCGACAAACTCAAGCTTCGCCTGCAGCTCTCTGGAGGACTCGCTGTGCC
GCAAAGAACGAGAGATGCTCGTTGCACTTGAACGACTCGACAAACTCAAG
CTTCGCCTGCAGGATGTGGAAAGAAGTGCTCGTGAAGGGGAGGATGATCT
AAGGAGCATGGTTCGCCAGCGAGAGTCAGAGGTCGAGCGGCTCACCAGAA
GGATGTGGAAAGAAGTGCTCGTGAAGGGGAGGATGATCTAAGGAGCATGG
TTCGCCAGCGAGAGTCAGAGGTCGAGCGGCTCACCAGAAGGAACGGGGTT
TTGAGTGAGGCCTTGTCGCGCCTTACGACGGAGACAGATCAAGACGGTCC
CCGAATGGAGCAAAAGGGTGCAGCATCGTCACGGGACGGGGCGCTACAGA
GAACGGATATTTCATCCACGTCGTTAGTGTCACAAACGAGTAGGTCGTTG
GGCGGAGCTTGCGGTAGTGCTATTAGCTTCGATCAAAACGGCTCCCCGAT
CATTCCGCGACTCGGAACAGGGCACGATCTTGAACGGGGTTTTGAGTGAG
GCCTTGTCGCGCCTTACGACGGAGACAGATCAAGACGGTCCCCGAATGGA
GCAAAAGGGTGCAGCATCGTCACGGGACGGGGCGCTACAGAGAACGGATA
TTTCATCCACGTCGTTAGTGTCACAAACGAGTAGGTCGTTGGGCGGAGCT
TGCGGTAGTGCTATTAGCTTCGATCAAAACGGCTCCCCGATCATTCCGCG
ACTCGGAACAGGGCACGATCTT
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