mRNA_H-paniculata_contig1601.3492.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1601.3492.1
Unique NamemRNA_H-paniculata_contig1601.3492.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1601.3492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1601contigH-paniculata_contig1601:19418..20313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size231
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1601.3492.1prot_H-paniculata_contig1601.3492.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1601 19418..20313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929281.7290099-CDS-H-paniculata_contig1601:19417..194651622929281.7290099-CDS-H-paniculata_contig1601:19417..19465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 19418..19465 -
1691480799.7534466-CDS-H-paniculata_contig1601:19417..194651691480799.7534466-CDS-H-paniculata_contig1601:19417..19465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 19418..19465 -
1622929281.7488532-CDS-H-paniculata_contig1601:19722..197871622929281.7488532-CDS-H-paniculata_contig1601:19722..19787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 19723..19787 -
1691480799.7613845-CDS-H-paniculata_contig1601:19722..197871691480799.7613845-CDS-H-paniculata_contig1601:19722..19787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 19723..19787 -
1622929281.7682836-CDS-H-paniculata_contig1601:20195..203131622929281.7682836-CDS-H-paniculata_contig1601:20195..20313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 20196..20313 -
1691480799.769273-CDS-H-paniculata_contig1601:20195..203131691480799.769273-CDS-H-paniculata_contig1601:20195..20313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1601 20196..20313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1601.3492.1

>prot_H-paniculata_contig1601.3492.1 ID=prot_H-paniculata_contig1601.3492.1|Name=mRNA_H-paniculata_contig1601.3492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MARQGGHPGRVVLVVMIRDSWRRDRSIRHFGSEHLSGDTAVRKRFQWSII
THPHIQGHKPTKTYPHRLFPLGCALR*
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mRNA from alignment at H-paniculata_contig1601:19418..20313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1601.3492.1 ID=mRNA_H-paniculata_contig1601.3492.1|Name=mRNA_H-paniculata_contig1601.3492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=896bp|location=Sequence derived from alignment at H-paniculata_contig1601:19418..20313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGGCAGGGTGGGCATCCAGGGAGGGTGGTACTAGTGGTGATGAT
AAGAGACAGCTGGCGCAGAGACAGATCGATCAGGCACTTCGGGAGCGAGC
ACTTAAGCGGCGACACAGGTTTGGAGGGGTGGCTGGGTCGATAGAGTGTC
GATACAACTCTACAGTTGCCTAAAGATGATGACCACGCCGGTGTGCTAGG
TATAAAGACGAGTGTTTGATGGAGGCGTTGTGGAGCATGGCAGCCATGAA
CGTATATGTTCTATACGTTTTGGTGTTGACGCGCACATTTGTTCAATCTG
CCACTCTTCCTGCTGCTAGAATTAGCGCACAGCCATGAGCAGGGTTTCTA
CTAGGGCAACATGACCTTTAAGTTTACAGGGTGTGCTCTTCAGGATTTCA
TACAAAAAAACAGCTGTGTGCCATGCCGCTTCCAGAGTTATGTTCTTTTC
AAACAATAGTCGGTTCATTTTCTTCACCCTCCACCTTTCCTCACCCAAAT
TGCGTCGTGTCGCTCGTCACTCTCAGCAGTGCGGAAACGATTCCAGTGGA
GTATCATAACTCATCCACACATTCAAGGCCACAAACCGACGGTGAGAACT
CTGGAGGGCATGAAGTGACTTGAGCATACTAGATCCCACGTATATACCAA
CAGCCGTCTCCTCCAAGTCTGTAGTCATCGGCTTCAGAATTTTCAAAACA
AAATGTCATCATAAATTGCCGTTTGTATATATTGTAGTACAAATCGAGAG
AAACGTCCGCACCAACAAGGAAAGGACGAAACCTCAAGAGAATTCTCTCC
GTCTTCTCCTCCCCACTTCGCGCGCGATTTATCAACCGGGTATCGCAGAA
AACGTACCCGCATCGGCTTTTCCCGCTCGGCTGCGCTCTGAGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1601:19418..20313-

>mRNA_H-paniculata_contig1601.3492.1 ID=mRNA_H-paniculata_contig1601.3492.1|Name=mRNA_H-paniculata_contig1601.3492.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig1601:19418..20313- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGGCAGGGTGGGCATCCAGGGAGGGTGGTACTAGTGGTGATGAT
AAGAGACAGCTGGCGCAGAGACAGATCGATCAGGCACTTCGGGAGCGAGC
ACTTAAGCGGCGACACAGATGGCGAGGCAGGGTGGGCATCCAGGGAGGGT
GGTACTAGTGGTGATGATAAGAGACAGCTGGCGCAGAGACAGATCGATCA
GGCACTTCGGGAGCGAGCACTTAAGCGGCGACACAGCAGTGCGGAAACGA
TTCCAGTGGAGTATCATAACTCATCCACACATTCAAGGCCACAAACCGAC
GCAGTGCGGAAACGATTCCAGTGGAGTATCATAACTCATCCACACATTCA
AGGCCACAAACCGACGAAAACGTACCCGCATCGGCTTTTCCCGCTCGGCT
GCGCTCTGAGATAGAAAACGTACCCGCATCGGCTTTTCCCGCTCGGCTGC
GCTCTGAGATAG
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