mRNA_H-paniculata_contig160.3483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig160.3483.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI) HSP 1 Score: 219 bits (558), Expect = 2.440e-65 Identity = 111/200 (55.50%), Postives = 141/200 (70.50%), Query Frame = 1
Query: 235 MKFGVNVAAPFAGMKRDEGSAYPYAKQYCVRRSDLGTRLLVVQEMAKESTAPAPATATPRAADAEGVASRKFCEGMLVHVLEGGSELEA-SLASKTALVSRLKAVVDGHVYRLGDFFIRVGSCRKGAVYKGLVLEVEYMPTCRVVDGLAMITAFLPNVDESGRFIAASDLRDPLVFGRDPMYSRKHTALQTTDLFNRVFS 831
MK GVN+AAPF GMK++EG YP+AKQ+C+RR+D GTR++VVQEMA+E + A P EG L HVLEG LEA A++ LV+R+KA ++GH YRLGDF +RVG C+KGAV++GL LEVEY P RV DGL+MI AF+P++D+ G F A SDL+D +FGR P +S KH ALQ TDLFN VF+
Sbjct: 1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSY----AAVP--------------EGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQDLAMFGRGPQFSVKHNALQITDLFNEVFA 182
BLAST of mRNA_H-paniculata_contig160.3483.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA) HSP 1 Score: 117 bits (293), Expect = 7.890e-27 Identity = 76/181 (41.99%), Postives = 96/181 (53.04%), Query Frame = 1
Query: 235 MKFGVNVAAPFAGM-KRDEGSAYPYAKQYCVRRSDLGTRLLVVQEMAKESTAPAPATATPRAADAEGVASRKFCEGMLVHVLEGGSELEASLASKTALVSRLKAVVDGHVYRLGDFFIRVGSCRKGAVYKGLVLEVEYMPTCRVVDGLAMITAFLPNVDESGRFIAASDLRDPLVFGRDPM 774
M+FGVN A F G R + + YP+ + VRRSD R+ +VQEM K RAA E VL G LEA +A K +RLKAV++G + LGDF +RVG+CRKG+ Y+GL +EVEY P V DG AMI A LP +D +G F A PL +PM
Sbjct: 1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGK------------RAATLE-------------QVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALS---PLPCALEPM 153 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig160.3483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig160.3483.1 >prot_H-paniculata_contig160.3483.1 ID=prot_H-paniculata_contig160.3483.1|Name=mRNA_H-paniculata_contig160.3483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp MCETGTSVCCIFGQSVSQEGSLQAVKALQDHLVDALGAELLDRWTVEVTYback to top mRNA from alignment at H-paniculata_contig160:37101..41456+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig160.3483.1 ID=mRNA_H-paniculata_contig160.3483.1|Name=mRNA_H-paniculata_contig160.3483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4356bp|location=Sequence derived from alignment at H-paniculata_contig160:37101..41456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig160:37101..41456+ >mRNA_H-paniculata_contig160.3483.1 ID=mRNA_H-paniculata_contig160.3483.1|Name=mRNA_H-paniculata_contig160.3483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig160:37101..41456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |