mRNA_H-paniculata_contig160.3480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig160.3480.1 vs. uniprot
Match: D7G8Q9_ECTSI (Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q9_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 8.840e-154 Identity = 480/700 (68.57%), Postives = 524/700 (74.86%), Query Frame = 1
Query: 262 MASYIVTGIHAAARAGKLQKVQDYIAKGGDVNKPDREDCSPLMWACWGGHVEIVKRLLDEGAKPDTFSHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKSNDIIKLLKSKMPADDDEGLDGSYHPESSGTLMGAAASVAKNLASHNSSAAGPIGVDDAPTEINSLPAVGSSFVMD--ASENGDHQPSTNGVSSHAHDD-----NGEPNGRVDGEPPWQTRARL-----GPPRKSSMPVNLGVG-----------------------VNAANDRRQPGTGSGADGGLVQGFPPDANTSDKQRKKKSTINIKMSDGVVSIGEGGVKSTGIEQASPTHRRRGSNFTGLGITSVAPAPGARVKRSPQGSVTGGSSTKGSEKDDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKKSTINKDFEARQGNT--GLDRSVNVEPPPPPSLGGTLV----DWPPVAPGGGPFASQKEVGELRQAIALKDKELRDIRDEMQDREANLDTLRKAGRNLXXXXXXXXXXXXXXXDRLSRMEDAAR----AAAGCNCTVM 2226
MASYIVTG+HAAARAGKLQKVQD+IAKGGDVNKPDRE CSPLMWACWGGHVEIVKRLLDEGAKPDT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKS DIIKLLK+KMP DDD+GLDGSYHPES GTLMGAA SVAKN+ASH S+++ N+ P + V+D A +TNG S A +G+ NG VDG PP QT+ P RKSS+ +G G + P GA GG + +KKSTIN+ M+DG+VSIG+G G E ASPT++RRGS + G+ APAP +RVKRSPQGSVTG SSTKGSE+DDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMK++TI KDFEA+Q N LDR++ EPP P+LGGT DW FAS+ E+GELRQA+A+KDKELRDIRD MQD+E LDTLRKAG+N XXXXXXXXXX DRLSRMED AR A+ GCNCT+M
Sbjct: 1 MASYIVTGVHAAARAGKLQKVQDFIAKGGDVNKPDREHCSPLMWACWGGHVEIVKRLLDEGAKPDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGQSASQKNRGKSEDIIKLLKNKMPEDDDQGLDGSYHPESDGTLMGAAMSVAKNVASHTSTSS-----TTGEAAANTTPTAAADAVVDKAAVSTSGASKATNGESPRADRQETIPPSGDSNGLVDGAPPEQTKTAAKSDAPAPARKSSLLFGVGGGNAKQXXXXXXXXXXXXXXXXXXXXRGNSPAAAPSGAQGAGGG-------------DRARKKSTINLTMADGMVSIGDG---KPGNE-ASPTNKRRGSTY-GMTTVPAAPAPASRVKRSPQGSVTGESSTKGSERDDMEEVSNEEVAYEMALEQIIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKRTTIAKDFEAKQANPDGALDRTLGNEPPLAPNLGGTTAASGADWSGNGIAADQFASKDELGELRQAVAMKDKELRDIRDRMQDKEGELDTLRKAGKNXXXXXXXXXXXTRGIMDRLSRMEDTARKVSAASGGCNCTIM 677
BLAST of mRNA_H-paniculata_contig160.3480.1 vs. uniprot
Match: A0A835ZGN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGN2_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 2.120e-7 Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 1
Query: 1681 EVAYEMALEQ----IIADLDDLEERVENLNVDQKTNEDILLNVLKRVDETEKDLRKMKKSTINKDFEARQGNTGLDRSVNVEPPPPPSLGGTLVDWPPVAPGGGPFASQKEVGELRQAIALKDKELRDIRDEMQDREANLDTLRKAGRN 2115
E+AY+MALEQ +IA L+DLE +V+N+ DQ NED+L++V+ R E+ + K+K E ++ T R+ P P+ D A GG P AS EVGELR + +++E R + +++ + LD LRKA RN
Sbjct: 652 EIAYDMALEQRCRQVIATLEDLETKVDNIGTDQSANEDMLMDVVSRTGMVERGMAKLK-------IELQELAT---RAPAAAAAPAPTT--DADDSAQTADGGSPRASAGEVGELRAHLLGREREARAVHARVEELDGELDMLRKASRN 788
BLAST of mRNA_H-paniculata_contig160.3480.1 vs. uniprot
Match: A0A0G4GL73_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GL73_9ALVE) HSP 1 Score: 58.5 bits (140), Expect = 2.370e-5 Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1
Query: 280 TGIHAAARAGKLQKVQDYIAKGGDVNKPDREDCSPLMWACWGGHVEIVKRLLDEGAKPD 456
T +H A+R G L+ V +A G N DC L+WA GGHVEIVK LLD AK D
Sbjct: 71 TALHLASRLGSLEVVLRLLAFGAGPNVKASRDCRALIWAAAGGHVEIVKALLDAKAKVD 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig160.3480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig160.3480.1 >prot_H-paniculata_contig160.3480.1 ID=prot_H-paniculata_contig160.3480.1|Name=mRNA_H-paniculata_contig160.3480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=656bp MASYIVTGIHAAARAGKLQKVQDYIAKGGDVNKPDREDCSPLMWACWGGHback to top mRNA from alignment at H-paniculata_contig160:3620..16149+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig160.3480.1 ID=mRNA_H-paniculata_contig160.3480.1|Name=mRNA_H-paniculata_contig160.3480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12530bp|location=Sequence derived from alignment at H-paniculata_contig160:3620..16149+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig160:3620..16149+ >mRNA_H-paniculata_contig160.3480.1 ID=mRNA_H-paniculata_contig160.3480.1|Name=mRNA_H-paniculata_contig160.3480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3936bp|location=Sequence derived from alignment at H-paniculata_contig160:3620..16149+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |