mRNA_H-paniculata_contig15999.3477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15999.3477.1
Unique NamemRNA_H-paniculata_contig15999.3477.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15999.3477.1 vs. uniprot
Match: D7FT17_ECTSI (RED_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT17_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 5.690e-19
Identity = 52/64 (81.25%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:   33 TGASGGSSKRIERDIFAARRSRGQALGVEAGGYDVYPETGDFETYDSDEDAATTAKGAKPGGDG 224
            TG SGG  K IERDIFAAR SRGQALGV AGGYDVYPETGDFETYDSDEDA T  K AKPG +G
Sbjct:  303 TGKSGGRDK-IERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDEDA-TNKKDAKPGPEG 364
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BLAST of mRNA_H-paniculata_contig15999.3477.1 vs. uniprot
Match: A0A6H5L4J3_9PHAE (RED_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 7.350e-19
Identity = 52/64 (81.25%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:   33 TGASGGSSKRIERDIFAARRSRGQALGVEAGGYDVYPETGDFETYDSDEDAATTAKGAKPGGDG 224
            TG SGG  K IERDIFAAR SRGQALGV AGGYDVYPETGDFETYDSDEDA T  K AKPG +G
Sbjct:  432 TGKSGGRDK-IERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDEDA-TNKKDAKPGPEG 493
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15999.3477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT17_ECTSI5.690e-1981.25RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4J3_9PHAE7.350e-1981.25RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15999contigH-paniculata_contig15999:2262..5400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size248
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.0967863-CDS-H-paniculata_contig15999:2263..23301622929278.0967863-CDS-H-paniculata_contig15999:2263..2330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15999 2264..2330 -
1691480797.8204741-CDS-H-paniculata_contig15999:2263..23301691480797.8204741-CDS-H-paniculata_contig15999:2263..2330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15999 2264..2330 -
1622929278.1082563-CDS-H-paniculata_contig15999:5221..54001622929278.1082563-CDS-H-paniculata_contig15999:5221..5400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15999 5222..5400 -
1691480797.829925-CDS-H-paniculata_contig15999:5221..54001691480797.829925-CDS-H-paniculata_contig15999:5221..5400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15999 5222..5400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15999.3477.1prot_H-paniculata_contig15999.3477.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15999 2264..5400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15999.3477.1

>prot_H-paniculata_contig15999.3477.1 ID=prot_H-paniculata_contig15999.3477.1|Name=mRNA_H-paniculata_contig15999.3477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
VAAAAASWGRGLVRREGVAKESSGISSLRGVVAGRLWAWRLAVTMCTRRR
ATLRLTIVMRMRRRPRREQSLEGMVAGWAQRV
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mRNA from alignment at H-paniculata_contig15999:2262..5400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15999.3477.1 ID=mRNA_H-paniculata_contig15999.3477.1|Name=mRNA_H-paniculata_contig15999.3477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3139bp|location=Sequence derived from alignment at H-paniculata_contig15999:2262..5400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCGGCGGCGGCGGCGAGCTGGGGGCGGGGACTGGTGCGTCGGGAGGG
AGTAGCAAAAGAATCGAGCGGGATATCTTCGCTGCGAGGCGTAGTCGCGG
GCAGGCTTTGGGCGTGGAGGCTGGCGGTTACGATGTGTACCCGGAGACGG
GCGACTTTGAGACTTACGATAGTGATGAGGTACGTGTGTTATGTGTGGTG
GAGGAGTAATGATGAGGGAAGGGCGGGGGAGTAGTTTGAACAAGTGATGG
TTGTAACGCTGTTCAGTTATTTTATCGTGCGAATATAGGCTGGTCGCAGT
AAGACCTTCCAGATTTCGTCGTCGCGCTTTTTGAAGCTGATGAACGAAGG
AAAGTACCACAAACCATATATGGGCATCACGCCACGGACAAAACGAAGAC
AGCAACGTGACGCATTTGATGCTATGAGTCGTGGTTCCCGAGAAAACCAG
AGATAACGGCGTGTGTATACTACGGTAATATGCTATAAATATGCCATATA
ACAGGACGGGGGTGCGTTTTTGACTTGTTTTTGCTGAGTTTTACGAAGTG
GAAGCTGAAATTTTGCAAAAATCATCGTCGTAAGTAGCAATGAAAGGTAC
ACTTTCCCCTTGTTCAATATCGGTCGTAGTCATCCAGAAATTCAAGAAAG
ATTGTTTTTATACCCCTGGCGGGTCATACTCCAAAATTCGTTTTTCAGTT
TTTGAGCGTTTTTTAGCTGAAATTCATGAGCTAGGCGTTGAAGCTTTGCT
TCAAGAAAAAAATCTTCTTTCCCTTTCCAAAATCGGTCGTTTTTCTTGAG
AAATCCATCGAAACAGGCCCTAGAGTGTGACATAGTCGGGGTCAAAACCC
TGTTTCACCGGATCTTTCGACAATCACGATTGATATCGAAAAAGGGGGTG
TCTAATTTTTTCCGTACTGGCATTTACAACTCTGAAAAATGTCAGCTTCT
TAACAGTAAAATTCAGCTCGAAATCATGGTGCTCTCAAGATTGTTCATTT
TCCAACCTACAAATGACAGCTGTACAGGTGGAGATATATAAAGTTTAAGC
TGAATTTTACGAATTTGAAGCTGAAAATATTCAGACATGTTGCAAATTTC
AAGACGAAAAAAGTTACACTTGCCCTTTTTTGATATTGGTCGTAGTTGCC
GAGACATGTTGCAAAAATATGCTATTGTACATTATGGATGACGTACTCCA
TAATGCGGATTGAATGATGAAATCGTTGTGGATCTTATAAATGACATATA
AAAAACATTCATACGTGCCCGTTTTCGATATCGGTCGTGGTTCTCGAGTT
ATCGGCGACAACCTGGCCCTGGAATATGACCTGTTTTTGCCAAAATTATA
TTTTTCCTCGGATTTGTCAACAACTACGATGGATATCGAAAGGGCCAATT
AATTTTTTTTAGTATTGCTAATTACAACATCTGTGCAAAAATTCATAATC
CAATTCGCAAAACTCAGCTCACAAAGGTGTTTCCGAATTTTGACAAGGTC
TTCCTGAGACCAGCTTGTAGTGCTGTCAGGATTGCAAGTTAACCCTTCTG
GAACTGGACATAATAGTAACTGACGATTTGGGATTGGCGATTTGAAACCA
AGGCATGTTCGCGATTCTTCAGTTTTCTTCTTCATATTTCACCCAAGTGG
GTGATTTCTCGGACCCGAAATGCTGAGAAAATGCTCGAAATTGTAGGTCA
CGGTTGACGCATTCGGCATTTCAGCATGTGATGCTTCATAAGATGCCTGC
TCGGAGTTACAGCCCAAACGGTGTAAATCTATCTGCGTTCAGGGTGAAAG
TATGACCGCAAACTCTCATAAGTCTTTTTTTGCTTGCTCAAGATCGAATC
AACTTCACTCATTCCAATCAATCTCTACTCTGGTGGACCCAGGCTACGCG
CCATTGAGTAGAAAACCCAAATACAGCAATTGTAGTTCGTGGTCCGCTCA
ACGTAACGGTCTCTGCTCTTGGCCATGAGATTAGGTGCAACTGTGTGCCT
CACATGCAACGCAGAGGCGTTCAAAACGCCAGTGCTACTCCCTGTACTGT
GTGTGGTTCAACGCTCGTGCCTTGAAATCCTCTTGCAGACGGTATCTGTC
TGTTCTATCTGTCTGTCTGTACTATCTGTCTGTTCTATCTGTCTGTCTGT
ACTATCTGTCTGTTCTATCTGTCTGTCTGTACTATCTGTCTGTCTGTACC
TGTCCATAGTAATTTAGGACAACTGTATTTTGTCTGAAGTTGGTTGTCCG
CTGTAAGTTGAGCTTTATTGGCGTTGACGTCATTATTATGCGCTTGCGAG
ACCAGAGCGGGCAGAACTTGCTGAGCTATGTGTCCCACGCGTGTGTCTCA
TGCCTCCAGTCTGCTTCGCTTGAAGCTCACTGCTGTTTTATACCGTGGTA
TATGACGTGTAAGAGCTGTAGGGCACCTATGGCGCAATACCCGATTCCGC
TGGGAACTGATAACTTAGTTTCTATTGTACGGACTGGCGATTCGGATTCG
TCCGATTTTAGTGTTCGGACTGTCGTTTGGGTGGAAGCTTGCATTGGACA
CCTTCATCCCGAGCGAGGCTCATGATTGGTCGGGTGACTATAGCTCCCGC
TGTATATGGTTATGCACCATGGTTGTCATCAGTTTTTATTTCATCGTTTT
TTTGTTCATCTTTCCAGAAAAGTAATGAAGCGTTTGCACCGGGGACGGGA
GGGATCACTTCCGAAGGAATTAATCTATGCCGATATTGTCATCGTCTAAT
CCGGGAGGCGTTTTCAATATGAGCTGATGGTTGTATGTAGCCATGCTTGT
GGGCTGAATACCTCCGCGTGCGATGATAATTGTGGTATTCCCCGCGCCCC
CACTCGTGTATCCCTTCATGGTGGCGCTACTCCCTTAGCCCAGTTCAGTT
CAATGTCGACTTGAATTCTGAGCGCTTTCAGTCGATGACTGAAAAGTATT
TTGATGCACTTGGAGAACTGATTTTAGTGATGAGGTGAACTTATTGGCCT
CTGCACCCCCCGCCGTTCACGCCTCGGCCCTCTTTCTTCTCTCTAACGTG
TCCGCGGCGATCACAAACAGGATGCGGCGACGACCGCGAAGGGAGCAAAG
CCTGGAGGGGATGGTGGCGGGGTGGGCGCAAAGGGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig15999:2262..5400-

>mRNA_H-paniculata_contig15999.3477.1 ID=mRNA_H-paniculata_contig15999.3477.1|Name=mRNA_H-paniculata_contig15999.3477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig15999:2262..5400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCGGCGGCGGCGGCGAGCTGGGGGCGGGGACTGGTGCGTCGGGAGGG
AGTAGCAAAAGAATCGAGCGGGATATCTTCGCTGCGAGGCGTAGTCGCGG
GCAGGCTTTGGGCGTGGAGGCTGGCGGTTACGATGTGTACCCGGAGACGG
GCGACTTTGAGACTTACGATAGTGATGAGGTGGCGGCGGCGGCGGCGAGC
TGGGGGCGGGGACTGGTGCGTCGGGAGGGAGTAGCAAAAGAATCGAGCGG
GATATCTTCGCTGCGAGGCGTAGTCGCGGGCAGGCTTTGGGCGTGGAGGC
TGGCGGTTACGATGTGTACCCGGAGACGGGCGACTTTGAGACTTACGATA
GTGATGAGGATGCGGCGACGACCGCGAAGGGAGCAAAGCCTGGAGGGGAT
GGTGGCGGGGTGGGCGCAAAGGGTGGATGCGGCGACGACCGCGAAGGGAG
CAAAGCCTGGAGGGGATGGTGGCGGGGTGGGCGCAAAGGGTG
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