mRNA_H-paniculata_contig15998.3476.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15998.3476.1
Unique NamemRNA_H-paniculata_contig15998.3476.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15998.3476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15998contigH-paniculata_contig15998:4511..5874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size238
Cds size237
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15998.3476.1prot_H-paniculata_contig15998.3476.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15998 4511..5874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929278.0007486-CDS-H-paniculata_contig15998:4510..45911622929278.0007486-CDS-H-paniculata_contig15998:4510..4591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15998 4511..4591 +
1691480797.7898664-CDS-H-paniculata_contig15998:4510..45911691480797.7898664-CDS-H-paniculata_contig15998:4510..4591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15998 4511..4591 +
1622929278.0159657-CDS-H-paniculata_contig15998:5333..54681622929278.0159657-CDS-H-paniculata_contig15998:5333..5468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15998 5334..5468 +
1691480797.8016012-CDS-H-paniculata_contig15998:5333..54681691480797.8016012-CDS-H-paniculata_contig15998:5333..5468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15998 5334..5468 +
1622929278.0547945-CDS-H-paniculata_contig15998:5853..58741622929278.0547945-CDS-H-paniculata_contig15998:5853..5874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15998 5854..5874 +
1691480797.811356-CDS-H-paniculata_contig15998:5853..58741691480797.811356-CDS-H-paniculata_contig15998:5853..5874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15998 5854..5874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15998.3476.1

>prot_H-paniculata_contig15998.3476.1 ID=prot_H-paniculata_contig15998.3476.1|Name=mRNA_H-paniculata_contig15998.3476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
AATPQDVPRAASEAVDTEAAGVEATAEQRHGIGDFVCHVFKIVWSALRLI
WMLIPLGMLVGYVSPSMTTFGHFALQLSE
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mRNA from alignment at H-paniculata_contig15998:4511..5874+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15998.3476.1 ID=mRNA_H-paniculata_contig15998.3476.1|Name=mRNA_H-paniculata_contig15998.3476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1364bp|location=Sequence derived from alignment at H-paniculata_contig15998:4511..5874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCGACTCCGCAAGATGTGCCGAGAGCTGCATCGGAGGCAGTGGACAC
TGAGGCCGCCGGTGTAGAGGCTACGGCAGAGGTGTGTACATTGTGTGCGT
AGGGTGATAGATGCTCTCGATTGCGCGACAGAAACGGTGCTCCAGCGTAC
CCGGGTATCACGACTAAAGCGGAAGTGCGGTAAGCTATAACCTCTACCCC
GGGAAGTGCTACTACTCATCTTCCGTCTCATACGCGCTCATCACTGAAAC
TCGGAGCTCACACGTATTGATTTTGGGCGCAAAATCAGATCATTTCCCCC
CACATTCAACCGAGGAATCAGCCGCCGTGCTAGCCTTGCTACATATTGGT
CAATGAGTATAGTAGGTAAAATCATCTGATAACTTGTGAAGCGCTTTGAC
GCTTCTATGTCTGTGCTTACCATGCGTGACAGCTTCGCCATTATACCGCA
GGTTACATACGACAACCCCTCCACGATGAACTTCTGGAAAATATCACGGG
GGGTGGTATTCGCGGGGCGGGTTTTACCCCTTACTCTTGATATTCAAACT
TCTAGATCCAATGTATGGATTGTGTTTTTTTGTCACCACTCGGGTCCGGG
GCACGTGGTACATTCCTGTATGGTGTTATACCCGATATACTGCGGTATCA
CGGTGGCCGAAACACCCCTCCGGTGAAACGACGGAAAAGAGTGCCGTGTT
CCAAAAGCATTCCCAACGCTGGGTCTTCGCCACAAGCCAAGCAACATTTT
ACGAGTTCTCCCTACCTTCCTCTCTCCCGCCCATCACCATCTGCAACGTA
TATCTGCCCGTGACCACGGGCAGCAACGCCACGGTATCGGGGACTTCGTC
TGCCACGTGTTCAAGATCGTGTGGTCGGCGTTACGACTGATCTGGATGTT
GATACCTCTTGGAATGCTGGTGGGATACGTGTCACCATCCATGACCACAT
TCGGCCACGTGAGAAGGGCGTATGGAGTATTGGTGCTTTAAACAGTGGAA
CGAGCTCGATCTTTGGGTTGCGTGTGTCTTGTTCCCTCGAGACGGGCGTG
TGTTCGAATTGGTATCCCGTAAACACGCGTGCGCTGTGCTCCAGCTGAAT
GCAAACTGGCTGGTTCGTATGTTTTATCCAGTCTTCCTGGACCAGTTGGG
CTTCGACAGCAAAATCTGGCATCACAATACTACTAGGTCCACTATTTGCG
TTCGGCGAAAACGCCAAAGATCCTCTAAGTCACACACACGGTAATCCATT
TTTTCCCCTCTTGGGTGTACCGGGCAACTTCTCGAGGTGGCTAACATGCC
GTCCCACCCCCCGCGCGTTTCGCCATCATCGCTGGAATGCCAGTTTGCAT
TGCAACTCTCCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15998:4511..5874+

>mRNA_H-paniculata_contig15998.3476.1 ID=mRNA_H-paniculata_contig15998.3476.1|Name=mRNA_H-paniculata_contig15998.3476.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig15998:4511..5874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCGACTCCGCAAGATGTGCCGAGAGCTGCATCGGAGGCAGTGGACAC
TGAGGCCGCCGGTGTAGAGGCTACGGCAGAGGCTGCGACTCCGCAAGATG
TGCCGAGAGCTGCATCGGAGGCAGTGGACACTGAGGCCGCCGGTGTAGAG
GCTACGGCAGAGCAACGCCACGGTATCGGGGACTTCGTCTGCCACGTGTT
CAAGATCGTGTGGTCGGCGTTACGACTGATCTGGATGTTGATACCTCTTG
GAATGCTGGTGGGATACGTGTCACCATCCATGACCACATTCGGCCACCAA
CGCCACGGTATCGGGGACTTCGTCTGCCACGTGTTCAAGATCGTGTGGTC
GGCGTTACGACTGATCTGGATGTTGATACCTCTTGGAATGCTGGTGGGAT
ACGTGTCACCATCCATGACCACATTCGGCCACTTTGCATTGCAACTCTCC
GAGTTTGCATTGCAACTCTCCGAG
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