mRNA_H-paniculata_contig15986.3470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15986.3470.1
Unique NamemRNA_H-paniculata_contig15986.3470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15986.3470.1 vs. uniprot
Match: A0A6H5LBA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.420e-18
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:  172 MAAPPIIGQCELVSGCSGERELTIITQQELEQLGSLQDVHLFVKLSGLRVGGLWCVECHQQLRDAAS 372
            M+  P +G C LV+GC+G++++T ITQ++L  LGSL+DV LFVKLS LRVGG+WC +CHQ L +AAS
Sbjct:    1 MSETPAVGPCGLVAGCAGDKQVTFITQEQLNGLGSLRDVDLFVKLSALRVGGIWCEDCHQLLFNAAS 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15986.3470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBA6_9PHAE5.420e-1859.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15986contigH-paniculata_contig15986:3763..5727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-22_003550.1
Exons2
Model size538
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15986.3470.1prot_H-paniculata_contig15986.3470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15986 5362..5727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.2757466-UTR-H-paniculata_contig15986:3762..39131622929277.2757466-UTR-H-paniculata_contig15986:3762..3913Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15986 3763..3913 +
1691480797.4083822-UTR-H-paniculata_contig15986:3762..39131691480797.4083822-UTR-H-paniculata_contig15986:3762..3913Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15986 3763..3913 +
1622929277.2934756-UTR-H-paniculata_contig15986:5341..53611622929277.2934756-UTR-H-paniculata_contig15986:5341..5361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15986 5342..5361 +
1691480797.4226832-UTR-H-paniculata_contig15986:5341..53611691480797.4226832-UTR-H-paniculata_contig15986:5341..5361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15986 5342..5361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.312681-CDS-H-paniculata_contig15986:5361..57271622929277.312681-CDS-H-paniculata_contig15986:5361..5727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15986 5362..5727 +
1691480797.44523-CDS-H-paniculata_contig15986:5361..57271691480797.44523-CDS-H-paniculata_contig15986:5361..5727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15986 5362..5727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15986.3470.1

>prot_H-paniculata_contig15986.3470.1 ID=prot_H-paniculata_contig15986.3470.1|Name=mRNA_H-paniculata_contig15986.3470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MAAPPIIGQCELVSGCSGERELTIITQQELEQLGSLQDVHLFVKLSGLRV
GGLWCVECHQQLRDAASASHHHEPSASVVHQQVQHHGPAAVAHHQATAMQ
QQQQQPHHTQQQRQESGRKRDY
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mRNA from alignment at H-paniculata_contig15986:3763..5727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15986.3470.1 ID=mRNA_H-paniculata_contig15986.3470.1|Name=mRNA_H-paniculata_contig15986.3470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1965bp|location=Sequence derived from alignment at H-paniculata_contig15986:3763..5727+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGCAATCGTCGAACGTGGGCTTCATACCCACCCCCCCTCGACGAAAAG
CAAGAACAAATTATTCGAAGCTTGAAGCATCTTTATTTAGACCCGCAAGG
GTCATCGTGCGCGTATCTGGAGGAACAGGCGGCACCGAATTCTCGACTGA
GGTAAGGAGCCGTTGCTGGGGGATTACCTCGCCTCAGACCCCAGCCGTTC
CGACGAACAGTCAGAGCGCTTGCTGGGAATGGTTAGCACAGCGAAGAGCT
GTTGCTGTTAGATAATTACAACGCACCGCACCGGTGGTCTCTCCATAGAT
ACTGTAATCTCGATGCAAGGATTCGCAGCCATGGCAGCGCGCCATATGGG
GAGGATCTGTTACATTAGGAGCGTGAAGCTTGACTTGCATCTGCTCAGTT
ATGTATTGTCATTTGTTTTGCGTGGCATTGCCTGTACCGCTGTATTGTAG
GAAGACCAGGTTAGAGCGACGGACATCCTGTATATAAATCTAGTAAGGTA
TTGTGTTTTCAATACGTCGGGCAATGCAGCGACCCTCAACAAACGTTGCA
ACTGCTTTCCAACCATGTCATGAACGTTGGACTATTTAACAAATTCAGTC
GCTCACTGTTTTTAACTGCCTGTACTGTCCGTTCATCGGACTCCCTGTCT
CATATTACCACGTATTAAGGAATGTCGCTCGGGTCGTAGATAGCATCACG
AGTTGCATCTGTTCGTCGACCATCCGTGTATCGGGTCGCATGGGAGTTTT
GTTGTCTAGATCATCAGAGTATCGTTGATATCTGATCTGTACTGTACAGT
TATATGATCATGAACGCTGTGGACGGTGGATGAGAGTGCTGACCAGGCTT
TCAGCACTCGGTACGGCGTACCCACAAAACCGATATGTATTTTGAGTGCT
TGAGGCACTGAACTGTAAAAGTGCCAATTGTCCAAATAGTACACACAATC
GAATCTACACTACTGTCGTTGCACGAATACCATCGATCAACACGTGGTAC
ATGAATAAGAGCGAACTAGACTCTAGAGCTCCAAATAGGCAGTACCTAAG
TGAGTGACGAGCAGCACGGTGCCAAAATTTTTGTGGCGGTTGCGACCACC
ATAACCAACGACCGACGGCGACTGAGGCGGCTTCAAATGACTATAACATT
GACGTTCTGAGAATTACGTTGTTCAAAGCGAAGTCGCGTTTCCCCTCCCA
ACTTTCATCTTTTCAAATTTCCATTCGAATTTGGCTACGTTTGCATGCAA
GGTTTAACACTTCGGATGGATCATGATCCGTCCGTCCAATTACTTGTTAT
TAGTATACAGGATCTGTAGATTACTAACCGCTCCTTGGACCCTGTTTTCA
GCTTTGCTCCTTACAGCGCTTGGACTTCTCTGACCCGCGGTCATGTCTTT
TGTGTTTTCTCGGACCAGCAAGGTCTGACAACTCCTGTTTTTAGTGATTT
GGATAAATCATGATCCGTCCGACGTGTGCAAGGTTTGCGTGTAAAATAGA
CAGTGCTGCACGTCTTTGCCATCCGCAGCACGGCTCACAGATCGATAATT
GAAACCAGTGCATGTTTTTTTTCTTCTAGGTCTTCGGTGGTCCACCGACA
TGGCCGCACCGCCCATCATCGGGCAGTGTGAGCTCGTCTCGGGCTGCTCG
GGCGAACGAGAGCTGACGATTATTACTCAACAGGAGTTGGAGCAGCTGGG
TTCCCTCCAGGATGTCCATTTGTTTGTCAAGCTCTCAGGGTTACGTGTGG
GCGGTCTTTGGTGCGTGGAATGTCATCAGCAGCTGCGTGACGCGGCGTCG
GCTTCGCATCACCATGAGCCGAGCGCGTCTGTGGTGCACCAACAAGTGCA
GCATCATGGCCCCGCCGCCGTTGCGCATCATCAAGCGACTGCTATGCAGC
AGCAACAGCAGCAACCACACCACACTCAGCAGCAAAGGCAGGAAAGTGGA
AGAAAGCGGGACTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig15986:3763..5727+

>mRNA_H-paniculata_contig15986.3470.1 ID=mRNA_H-paniculata_contig15986.3470.1|Name=mRNA_H-paniculata_contig15986.3470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig15986:3763..5727+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCACCGCCCATCATCGGGCAGTGTGAGCTCGTCTCGGGCTGCTC
GGGCGAACGAGAGCTGACGATTATTACTCAACAGGAGTTGGAGCAGCTGG
GTTCCCTCCAGGATGTCCATTTGTTTGTCAAGCTCTCAGGGTTACGTGTG
GGCGGTCTTTGGTGCGTGGAATGTCATCAGCAGCTGCGTGACGCGGCGTC
GGCTTCGCATCACCATGAGCCGAGCGCGTCTGTGGTGCACCAACAAGTGC
AGCATCATGGCCCCGCCGCCGTTGCGCATCATCAAGCGACTGCTATGCAG
CAGCAACAGCAGCAACCACACCACACTCAGCAGCAAAGGCAGGAAAGTGG
AAGAAAGCGGGACTACATGGCCGCACCGCCCATCATCGGGCAGTGTGAGC
TCGTCTCGGGCTGCTCGGGCGAACGAGAGCTGACGATTATTACTCAACAG
GAGTTGGAGCAGCTGGGTTCCCTCCAGGATGTCCATTTGTTTGTCAAGCT
CTCAGGGTTACGTGTGGGCGGTCTTTGGTGCGTGGAATGTCATCAGCAGC
TGCGTGACGCGGCGTCGGCTTCGCATCACCATGAGCCGAGCGCGTCTGTG
GTGCACCAACAAGTGCAGCATCATGGCCCCGCCGCCGTTGCGCATCATCA
AGCGACTGCTATGCAGCAGCAACAGCAGCAACCACACCACACTCAGCAGC
AAAGGCAGGAAAGTGGAAGAAAGCGGGACTAC
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