mRNA_H-paniculata_contig15984.3469.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15984.3469.1
Unique NamemRNA_H-paniculata_contig15984.3469.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: A0A835Z7B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.220e-17
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGWRNLPPRLGDEE 810
            F +G+     +VLM+LMP   +KLTTEHIKS LQKYRLH  RSK+EFLEFF+LRL+ KF  F     WRNLPP L DE+
Sbjct:  141 FELGLRHSSPKVLMKLMP-NTEKLTTEHIKSHLQKYRLHYARSKDEFLEFFELRLKEKFGTFCAGHMWRNLPPHLADED 218
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: A0A7S4D6B3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6B3_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 2.680e-12
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGWRNLPPRL 798
            F +G+     +VLM+LMP   + LTTEHIKS LQKYRLH  RSKEEFL+++   L+  F DF+ +EGWRN    L
Sbjct:   43 FEIGLRNSSPKVLMQLMP-LTNSLTTEHIKSHLQKYRLHYTRSKEEFLQYYDSHLKRDFEDFVSQEGWRNTEALL 116
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: A0A7R9YFR2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFR2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.690e-10
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGWR 780
            F +G++    +VLM  MP + D LTTEHIKS LQKYRLH  RSK EF+E +   L+A F  F +K+ WR
Sbjct:   74 FEIGLSRASPKVLMNFMP-RVDMLTTEHIKSHLQKYRLHHGRSKNEFMEHYNQCLKADFRAFCDKQSWR 141
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: A0A6S6I6H3_9STRA (Phosphorus starvation response like 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I6H3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.070e-8
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGWRN 783
            F +G+     +VLM LMP   + LTTEHIKS LQKYRLH NRSK+EF+E+F   ++  FA F  +  W +
Sbjct:  362 FKLGLKCSSPKVLMDLMP-MTETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYMRGPFASFCARREWEH 430
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: A0A4D9DAJ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAJ4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.350e-8
Identity = 41/97 (42.27%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGW---------------------RNLPPRLG 801
            F +G+     +VLM LMP   D LTTEHIKS LQKYRLH  RSKEEF+E++   ++  FA F  +  W                     R LPP LG
Sbjct:  298 FKLGLQCSSPKVLMDLMP-MTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREWEHDRSPYGPDGLLPPLFAHGHRRLPPALG 393
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: D7FMP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP1_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.770e-8
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSK 705
            F +G+     +VLM+LMPPKA+ LTTEHIKSRLQKYRLHA+RSK
Sbjct:   27 FELGLKHSSPKVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSK 70
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: W7TSM2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSM2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.010e-8
Identity = 41/97 (42.27%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGW---------------------RNLPPRLG 801
            F +G+     +VLM LMP   D LTTEHIKS LQKYRLH  RSKEEF+E++   ++  FA F  +  W                     R LPP LG
Sbjct:  327 FKLGLQCSSPKVLMDLMP-MTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREWEHDRSPYGPDGLLPPLFAHGHRRLPPALG 422
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: A0A482S6Z8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6Z8_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 3.030e-7
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGWRN 783
            F +G+     ++++ L+PP  + L TEHIKS LQKYR+H  RSKEEF+ F+   ++  F D+ EK GW +
Sbjct:   89 FELGLKNASPKLILPLLPPTTE-LNTEHIKSHLQKYRVHKERSKEEFVAFYTEHIKHTFDDWDEKRGWES 157
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: A0A7S3HM56_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM56_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.760e-7
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGWRNL 786
            F +G+     ++LM LMP + + L+TEHIKS LQKYR+H  RSK+EF +F+   ++  F  +   EGW++L
Sbjct:   75 FELGLKHSSPKILMPLMPNETN-LSTEHIKSHLQKYRIHRQRSKDEFFDFYNNYMKDAFQQWENAEGWKHL 144
[Close]
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Match: A0A6S6I2Y2_9STRA (Phosphorus starvation response like 2 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I2Y2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.490e-6
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:  574 FGVGVTAVRLQVLMRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFLEKEGWRNLPPRLGDEE 810
            F +G+     +VLM  MP  +  +TTEH+KS LQKYRLH  RS EEF+ F++  ++  FA F  + GW ++     D E
Sbjct:  194 FQIGLKRSSPRVLMDHMPDTST-ITTEHVKSHLQKYRLHHQRSNEEFMTFYREHIREPFASFQARRGWLDVSSSQRDGE 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15984.3469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835Z7B0_9STRA3.220e-1760.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D6B3_HETAK2.680e-1253.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9YFR2_9STRA5.690e-1052.17Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6S6I6H3_9STRA3.070e-850.00Phosphorus starvation response like 1 n=1 Tax=Nann... [more]
A0A4D9DAJ4_9STRA3.350e-842.27Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D7FMP1_ECTSI3.770e-870.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TSM2_9STRA4.010e-842.27Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A482S6Z8_9ARCH3.030e-744.29Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3HM56_9STRA6.760e-743.66Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A6S6I2Y2_9STRA1.490e-641.77Phosphorus starvation response like 2 n=1 Tax=Nann... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15984contigH-paniculata_contig15984:748..3167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionG2-like domain Myb transcription factor
Ec32 orthologEc-23_001040.1
Exons2
Model size887
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15984.3469.1prot_H-paniculata_contig15984.3469.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15984 1360..3167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.1926057-UTR-H-paniculata_contig15984:747..13591622929277.1926057-UTR-H-paniculata_contig15984:747..1359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15984 748..1359 +
1691480797.3668315-UTR-H-paniculata_contig15984:747..13591691480797.3668315-UTR-H-paniculata_contig15984:747..1359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15984 748..1359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.2102082-CDS-H-paniculata_contig15984:1359..14521622929277.2102082-CDS-H-paniculata_contig15984:1359..1452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15984 1360..1452 +
1691480797.375872-CDS-H-paniculata_contig15984:1359..14521691480797.375872-CDS-H-paniculata_contig15984:1359..1452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15984 1360..1452 +
1622929277.225478-CDS-H-paniculata_contig15984:2987..31671622929277.225478-CDS-H-paniculata_contig15984:2987..3167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15984 2988..3167 +
1691480797.3923187-CDS-H-paniculata_contig15984:2987..31671691480797.3923187-CDS-H-paniculata_contig15984:2987..3167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15984 2988..3167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15984.3469.1

>prot_H-paniculata_contig15984.3469.1 ID=prot_H-paniculata_contig15984.3469.1|Name=mRNA_H-paniculata_contig15984.3469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MRLMPPKADKLTTEHIKSRLQKYRLHANRSKEEFLEFFKLRLQAKFADFL
EKEGWRNLPPRLGDEEEDDGDCDGIADDGMMIRPGGGGGGS
back to top

mRNA from alignment at H-paniculata_contig15984:748..3167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15984.3469.1 ID=mRNA_H-paniculata_contig15984.3469.1|Name=mRNA_H-paniculata_contig15984.3469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2420bp|location=Sequence derived from alignment at H-paniculata_contig15984:748..3167+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTTATTCTATCTAGCTTATTGTATTGATTCTATTGCTAAATTTAGCG
GGCAATATATAGGGTAGTAATCTATTTGACGGTGAAATGCTGAGAGTAGC
CTGATGGCAGATTGCAGCGCACGCCGCCGTTGGTGACATACAAGAACCGA
CATTTTCTCATAGGCAGAAGTCCTCAGGACTCGTAGGGTTACTCGGCAGT
CGAACATGTTGAGCTCACACAAGTCATCTGAATATCAGTATATATCGCTG
TGTTGGCTCCGTATTTCACTCAGCGAGACACAGCGTCAAGGGTTTTGTGG
GAAACGGTCTGTGTCCACAATGGTGGTGTGGAATGCATTAATTCGTGCTA
CGAGCCCCGTTTTACTGCTTTTGCTCTTTTTAGCTGCAGTAGGTCCTAAG
GATGTCGAGGGGTTTGTTTTCTGAAATCAGTACGTGAGGTGCCACCGGGC
TGATGTTGCCAGGGGATTGTTCTTTTTCTCTGTTGATACTGGTCACGCTG
CGTATTGCCCGTCCTCCCTGTTCGTGTGTTTGTTGTTGTTGATGATGATG
GTGATGACGATGGTGATGTTTATTTTGGCGTTGGTGTTACTGCTGTGCGG
CTACAGGTGCTGATGAGACTCATGCCTCCGAAGGCAGATAAATTAACGAC
GGAGCACATCAAAAGCCGGCTGCAAAAATACCGACTGCACGCGAACCGAT
CGAAGGTGCGATGGAGTTTTTGCTATGTGTTTTTTTTGTTTGTCGTTTTG
TCACTTTTTTTTTTATGGTCTTGGTATACCCTCCGTGTCAACCAAGAAAC
GAAGGCAGTGCGAGCTACATCTGTGCACCAGGAGGGTGACCCAAATTTCT
GGAACTTTCTGGGGATGGTGCGCACCTCGGATGACTGAGTGATAGAGACC
CAGTTATACCTTCATGCCCAAGTTCGAATTTCATATGCAGATGACCGTTC
AACCCCTCATCGCATTTTGGGTTTCAACATGATATTGGTGAAATGGAGAC
CAATTTGTGTTTTGGAGAACGAGCCTGAAATCCATAATTTTTTTTCACGC
GACACGTTCTAGCGCGCTCACTTCGAAGAGGTAGATAGACTGCGTGTAGC
GGCTCAAACAAACGGCCTTGCTCATAGCAGCACGCAGATACTTGCTGTAT
AGTCACCTGTAGTCTCGGCGGCGAGTTACAGCAGATTGAAAGGCCTGCCT
GGACTGCTGCAAGCAAGAGTATCGATAAAAAACAAAGTCCGCGCCAAATG
GATTAATCGGTTTTCCACTCACTCTTGTCACTGCCATAAATTCCGAGCCA
TGGATCGGATTCCGTCAGTTGAGGTATTACCGTCATTGGGTGTCTGAGAG
CTTTTTGATTGAGCTATCAACCAACCGAATCGGCCATGTTGGTCGGAAAC
TACTACAGGCGGAAACATCGGTGGCATGGACAATAACGTCTGGAGCTCGT
TCTCCAAAAAAAGAAAGTTCGTTCTCGATTTCACCAATAATACGATTTTT
TGAGATTTTCGCAATTAGCTGATTCTCAGACCATCGTCAAATTTTGTGTT
TTTTGTTTTTTATTCTTCTCTTTTTGTTGTATCCGTTCCTTTCTGTTCAT
TATTGATATTCAACATGATTTTATTTTTATTGTATCCTCCGTGACTCTGC
CACCGTTTCTCATATATTTTGGACGAGGAGTTCGCGGTTCTAAATCTGCG
TTCGCCCGCGATTTGTGTGTACTGCCATACACATGCATGGTCGATATTGT
AGTATGCACATATAGTGGTAGCACATCTCAGTTCGTTTAGTGGCTGAAAC
TTGGCATGTATATATATATATATATACGTGAAAAAGCGGTTTACTAAAAG
TGTTGACCTTGAAATAGGGGGTGCTAACCTGTATGTACCTTGCTTGAAGG
ACCGGTCCCCCTTGATGTACCTTTATCGAGTTGTTTGGTTTCCTGATTAC
ATAGCTATCTTGTAAACATTTGATAGATTTTTTTCTTTTGGGCTTCGTTG
TTAGCTCTCTCTTTGAATTTTTTTTTCTCCCCGTGGGTGTACGAAAATCG
GTGAAGGCTAGTATCCTTATCAAAAAGGCTCGTTCATCCGAGGGGTGGAT
TATACGGTGTTACCGAGTGCTCGTTGATGATTTTCTATTTGTAATGATCA
CATAGTTGAACCATCCAAAACAACCATCCGAAACGTTGTATTGAAGCTCT
CTTGGCCTCTTTTCCGTGTACGACAAATGACATGTGACAGGAGGAATTCT
TGGAGTTTTTCAAGCTCCGATTACAAGCGAAATTCGCGGATTTTTTGGAG
AAGGAAGGGTGGCGCAATTTGCCGCCTAGATTAGGGGACGAAGAGGAGGA
CGATGGTGATTGTGACGGCATCGCTGATGACGGGATGATGATTCGTCCAG
GCGGTGGTGGTGGTGGCAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15984:748..3167+

>mRNA_H-paniculata_contig15984.3469.1 ID=mRNA_H-paniculata_contig15984.3469.1|Name=mRNA_H-paniculata_contig15984.3469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig15984:748..3167+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACTCATGCCTCCGAAGGCAGATAAATTAACGACGGAGCACATCAA
AAGCCGGCTGCAAAAATACCGACTGCACGCGAACCGATCGAAGATGAGAC
TCATGCCTCCGAAGGCAGATAAATTAACGACGGAGCACATCAAAAGCCGG
CTGCAAAAATACCGACTGCACGCGAACCGATCGAAGGAGGAATTCTTGGA
GTTTTTCAAGCTCCGATTACAAGCGAAATTCGCGGATTTTTTGGAGAAGG
AAGGGTGGCGCAATTTGCCGCCTAGATTAGGGGACGAAGAGGAGGACGAT
GGTGATTGTGACGGCATCGCTGATGACGGGATGATGATTCGTCCAGGCGG
TGGTGGTGGTGGCAGCGAGGAATTCTTGGAGTTTTTCAAGCTCCGATTAC
AAGCGAAATTCGCGGATTTTTTGGAGAAGGAAGGGTGGCGCAATTTGCCG
CCTAGATTAGGGGACGAAGAGGAGGACGATGGTGATTGTGACGGCATCGC
TGATGACGGGATGATGATTCGTCCAGGCGGTGGTGGTGGTGGCAGC
back to top