mRNA_H-paniculata_contig15980.3468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: D8LMR4_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR4_ECTSI) HSP 1 Score: 109 bits (273), Expect = 7.070e-23 Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGGHCDPAAVTPEEIDDFVVCGQVAGVRSLLEGEGEA 277
M C+IINAPWVF+ALWKGL PLMS T KK+++L YD L L + IS++RLP GG CDP T E++ DFVVCG+VA L G+G A
Sbjct: 367 MEKCYIINAPWVFYALWKGLQPLMSAGTAKKVQMLKYDVLSCLSETISLERLPTSAGGACDPDMATTEQMHDFVVCGRVA---KLPGGDGAA 455
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: A0A6H5JNT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.520e-22 Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGGHCDPAAVTPEEIDDFVVCGQVA 241
M C+IINAPWVF+ALWKGL PLMS T K+++L YD L +L + IS++RLP GG CDP VT E++ DFVVCG+VA
Sbjct: 449 MEKCYIINAPWVFYALWKGLQPLMSAGTANKVQMLKYDVLSSLSETISLERLPTSAGGVCDPDMVTTEQMHDFVVCGRVA 528
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: A0A7S3USY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY2_HETAK) HSP 1 Score: 66.2 bits (160), Expect = 8.680e-9 Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGG 175
M C I+NAPWVFF LW+ + P++S ++ K+KVL+Y+++ L+K + ++P +GG
Sbjct: 42 MHRCIIVNAPWVFFTLWRVIKPMLSEHSANKVKVLDYNYMEELKKYVDQKKMPVFLGG 99
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: A0A7J6S5U2_PEROL (Cytosolic factor, phosphatidylinositol/phosphatidylcholine transfer protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6S5U2_PEROL) HSP 1 Score: 62.0 bits (149), Expect = 6.700e-8 Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGGHC 181
+GT F++NAP++F A+WK ++P++ P T KI VL ++ PTL + +LP +GG C
Sbjct: 17 LGTMFVVNAPFIFTAIWKVVSPMVDPITRSKIVVLGSNYKPTLHNVVDPSQLPDFLGGTC 76
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: C5LST7_PERM5 (CRAL-TRIO domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LST7_PERM5) HSP 1 Score: 64.3 bits (155), Expect = 9.420e-8 Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGGHC 181
+GT F++NAP++F A+WK ++P++ P T KI VL ++ PTL + D+LP +GG C
Sbjct: 204 LGTMFVVNAPFIFTAIWKVVSPMVDPITRSKIVVLGSNYKPTLHSVVDPDQLPDFLGGTC 263
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: A0A7J6LP81_PEROL (Cytosolic factor, phosphatidylinositol/phosphatidylcholine transfer protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LP81_PEROL) HSP 1 Score: 62.0 bits (149), Expect = 3.300e-7 Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGGHC 181
+GT F++NAP++F A+WK ++P++ P T KI VL ++ PTL + +LP +GG C
Sbjct: 202 LGTMFVVNAPFIFTAIWKVVSPMVDPITRSKIVVLGSNYKPTLHNVVDPSQLPDFLGGTC 261
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: A0A835YKX5_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX5_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.760e-7 Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVL 106
M TCF++NAPW+FFA++KG+ PLMS +TV K+K++
Sbjct: 33 MDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKLV 67
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: C5LMF5_PERM5 (Phosphatidylinositol/phosphatidylcholine transfer protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LMF5_PERM5) HSP 1 Score: 61.2 bits (147), Expect = 3.810e-7 Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGG 175
+GT F++NAP++F A+WK ++P++ P T KI VL ++ PTL + D+LP +GG
Sbjct: 204 LGTMFVVNAPFIFTAIWKVVSPMVDPITRSKIVVLGSNYKPTLHSVVDPDQLPDFLGG 261
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: A0A7J6SWK1_PEROL (Cytosolic factor, phosphatidylinositol/phosphatidylcholine transfer protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SWK1_PEROL) HSP 1 Score: 62.0 bits (149), Expect = 4.340e-7 Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGGHC 181
+GT F++NAP++F A+WK ++P++ P T KI VL ++ PTL + +LP +GG C
Sbjct: 110 LGTMFVVNAPFIFTAIWKVVSPMVDPITRSKIVVLGSNYRPTLHNVVDPSQLPDFLGGTC 169
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Match: A0A7J6NSH2_PEROL (Cytosolic factor, phosphatidylinositol/phosphatidylcholine transfer protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NSH2_PEROL) HSP 1 Score: 62.0 bits (149), Expect = 4.740e-7 Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query: 2 MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDRLPKRVGGHC 181
+GT F++NAP++F A+WK ++P++ P T KI VL ++ PTL + +LP +GG C
Sbjct: 202 LGTMFVVNAPFIFTAIWKVVSPMVDPITRSKIVVLGSNYKPTLHNVVDPSQLPDFLGGTC 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15980.3468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15980.3468.1 >prot_H-paniculata_contig15980.3468.1 ID=prot_H-paniculata_contig15980.3468.1|Name=mRNA_H-paniculata_contig15980.3468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=323bp MGTCFIINAPWVFFALWKGLAPLMSPNTVKKIKVLNYDFLPTLRKKISMDback to top mRNA from alignment at H-paniculata_contig15980:3340..5777- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15980.3468.1 ID=mRNA_H-paniculata_contig15980.3468.1|Name=mRNA_H-paniculata_contig15980.3468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2438bp|location=Sequence derived from alignment at H-paniculata_contig15980:3340..5777- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15980:3340..5777- >mRNA_H-paniculata_contig15980.3468.1 ID=mRNA_H-paniculata_contig15980.3468.1|Name=mRNA_H-paniculata_contig15980.3468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at H-paniculata_contig15980:3340..5777- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |