prot_H-paniculata_contig1598.3467.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1598.3467.1
Unique Nameprot_H-paniculata_contig1598.3467.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length521
Homology
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BLAST of mRNA_H-paniculata_contig1598.3467.1 vs. uniprot
Match: A0A6H5KJ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ39_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 6.140e-62
Identity = 115/259 (44.40%), Postives = 156/259 (60.23%), Query Frame = 0 
Query:   18 LTLCCFQLLLCP---------ARGIARRSTFYQDKSCSQEVFREYYYSASAIDGEGNVTEAPFNVCYARGSTGAITTCDTADGTSAIETYADNECKQQLYTTASAPSCVEVMKSGEAAAPAGASSSTSDCTNTTPSARITGTKFNLIGAPYEDNQCTKKSGDQHVVPGEAFGVGSAVCDRSFLSRGRLHALSTCMTDGS-VFTQVFSESDDACKGDMLYESIIFSASGDLLHSGGVCTLGKFEDRYE-YYRLTSCTTDE 265
            + +CC+  LLC          ++  ARR+ +YQD  C  E FRE+ Y   +ID +G+ ++  F  CYARGSTGAITTCD  DGTS +ETY D  C+  LY++  +P CV++   GE   P G  S  SDC +  P   IT   FNLIG+PY D  C +++G  H+V G AFG+G+  C  S L RG  +AL+ C T+ + V  QVFS  D  C GD   E I+F+ + D   +GG+C LG FED +E YYR+ +CTT+E
Sbjct:   19 VAVCCYLQLLCKIPTAMAGATSQTGARRTLYYQDTGCRLETFREFAYEVMSIDSDGSESQVGFGECYARGSTGAITTCDPTDGTSTVETYLDTACQIHLYSSKDSPECVDLRVDGETCPPGGPGSMASDCISEDPIDTITPGTFNLIGSPYSDPFCEERTGGDHIVSGNAFGIGNGECSLSPLVRGPRYALTECDTETNLVLAQVFSPEDSTCSGDTRLEMIMFARAVDNDTNGGMCALGHFEDGHEEYYRVKACTTEE 277
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BLAST of mRNA_H-paniculata_contig1598.3467.1 vs. uniprot
Match: D7FZX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX6_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.550e-39
Identity = 74/161 (45.96%), Postives = 98/161 (60.87%), Query Frame = 0 
Query:   34 ARRSTFYQDKSCSQEVFREYYYSASAIDGEGNVTEAPFNVCYARGSTGAITTCDTADGTSAIETYADNECKQQLYTTASAPSCVEVMKSGEAAAPAGASSSTSDCTNTTPSARITGTKFNLIGAPYEDNQCTKKSGDQHVVPGEAFGVGSAVCDRSFLSRG 194
            ARR+ +YQD  C  E FRE+ Y   +I+ +G+ ++  F  CYARGSTGAITTCD  DGTS +ETY D  C+  LY++  +  CV++   GE   P G  S  SDC +  P   IT   FNLIG+PY D  C +++G  H+V G AFG+G+  C  S L  G
Sbjct:   44 ARRTLYYQDTGCRLETFREFAYEVMSIESDGSDSQVGFGECYARGSTGAITTCDPTDGTSTVETYLDTACQIHLYSSKDSLECVDLRVDGETCPPGGPGSMASDCISEDPIDTITPGTFNLIGSPYSDPFCEERTGGDHIVSGNAFGIGNGECSLSPLGEG 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1598.3467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ39_9PHAE6.140e-6244.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZX6_ECTSI2.550e-3945.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 509..520
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 487..508
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..486
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..32
score: 0.629
NoneNo IPR availableTMHMMTMhelixcoord: 487..509

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1598contigH-paniculata_contig1598:2883..8750 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1598.3467.1mRNA_H-paniculata_contig1598.3467.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1598 512..8881 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1598.3467.1 ID=prot_H-paniculata_contig1598.3467.1|Name=mRNA_H-paniculata_contig1598.3467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=521bp
MDSTPMASTPSARRAALLTLCCFQLLLCPARGIARRSTFYQDKSCSQEVF
REYYYSASAIDGEGNVTEAPFNVCYARGSTGAITTCDTADGTSAIETYAD
NECKQQLYTTASAPSCVEVMKSGEAAAPAGASSSTSDCTNTTPSARITGT
KFNLIGAPYEDNQCTKKSGDQHVVPGEAFGVGSAVCDRSFLSRGRLHALS
TCMTDGSVFTQVFSESDDACKGDMLYESIIFSASGDLLHSGGVCTLGKFE
DRYEYYRLTSCTTDEVGVVVATSPTPSPFSVITPEPSYTDADHSYYYGPD
PSDPIVDDDDSAHGGDGSKGGSSDDNGTSNGGGSDDDEGSSSSDDSNTSS
DDTDDDDSGIYPGHVDVTPSPRHTDDDGVKDDDGDEDHTEPPRTSHDDDS
GDDSSDDRNTPSPKTGHDDDSRGDSSDDGKTPPPRRGHDDDSRADSSDSH
DSSDSDDDDNEANPFGRKDKEGGGGGKDGLSGDEAGALIFGITISILICI
FSAVLAFAGRQGEAGKVGPK*
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