mRNA_H-paniculata_contig1598.3467.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1598.3467.1 vs. uniprot
Match: A0A6H5KJ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ39_9PHAE) HSP 1 Score: 220 bits (560), Expect = 1.330e-58 Identity = 117/266 (43.98%), Postives = 159/266 (59.77%), Query Frame = 3
Query: 162 SARRAALLTLCCFQLLLCP---------ARGIARRSTFYQDKSCSQEVFREYYYSASAIDGEGNVTEAPFNVCYARGSTGAITTCDTADGTSAIETYADNECKQQLYTTASAPSCVEVMKSGEAAAPAGASSSTSDCTNTTPSARITGTKFNLIGAPYEDNQCTKKSGDQHVVPGEAFGVGSAVCDRSFLSRGRLHALSTCMTDGS-VFTQVFSESDDACKGDMLYESIIFSASGDLLHSGGVCTLGKFEDRYE-YYRLTSCTTDE 926
SA + + +CC+ LLC ++ ARR+ +YQD C E FRE+ Y +ID +G+ ++ F CYARGSTGAITTCD DGTS +ETY D C+ LY++ +P CV++ GE P G S SDC + P IT FNLIG+PY D C +++G H+V G AFG+G+ C S L RG +AL+ C T+ + V QVFS D C GD E I+F+ + D +GG+C LG FED +E YYR+ +CTT+E
Sbjct: 12 SAIISTTVAVCCYLQLLCKIPTAMAGATSQTGARRTLYYQDTGCRLETFREFAYEVMSIDSDGSESQVGFGECYARGSTGAITTCDPTDGTSTVETYLDTACQIHLYSSKDSPECVDLRVDGETCPPGGPGSMASDCISEDPIDTITPGTFNLIGSPYSDPFCEERTGGDHIVSGNAFGIGNGECSLSPLVRGPRYALTECDTETNLVLAQVFSPEDSTCSGDTRLEMIMFARAVDNDTNGGMCALGHFEDGHEEYYRVKACTTEE 277
BLAST of mRNA_H-paniculata_contig1598.3467.1 vs. uniprot
Match: D7FZX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX6_ECTSI) HSP 1 Score: 152 bits (384), Expect = 7.130e-38 Identity = 74/161 (45.96%), Postives = 98/161 (60.87%), Query Frame = 3
Query: 231 ARRSTFYQDKSCSQEVFREYYYSASAIDGEGNVTEAPFNVCYARGSTGAITTCDTADGTSAIETYADNECKQQLYTTASAPSCVEVMKSGEAAAPAGASSSTSDCTNTTPSARITGTKFNLIGAPYEDNQCTKKSGDQHVVPGEAFGVGSAVCDRSFLSRG 713
ARR+ +YQD C E FRE+ Y +I+ +G+ ++ F CYARGSTGAITTCD DGTS +ETY D C+ LY++ + CV++ GE P G S SDC + P IT FNLIG+PY D C +++G H+V G AFG+G+ C S L G
Sbjct: 44 ARRTLYYQDTGCRLETFREFAYEVMSIESDGSDSQVGFGECYARGSTGAITTCDPTDGTSTVETYLDTACQIHLYSSKDSLECVDLRVDGETCPPGGPGSMASDCISEDPIDTITPGTFNLIGSPYSDPFCEERTGGDHIVSGNAFGIGNGECSLSPLGEG 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1598.3467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1598.3467.1 >prot_H-paniculata_contig1598.3467.1 ID=prot_H-paniculata_contig1598.3467.1|Name=mRNA_H-paniculata_contig1598.3467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=521bp MDSTPMASTPSARRAALLTLCCFQLLLCPARGIARRSTFYQDKSCSQEVFback to top mRNA from alignment at H-paniculata_contig1598:512..8881- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1598.3467.1 ID=mRNA_H-paniculata_contig1598.3467.1|Name=mRNA_H-paniculata_contig1598.3467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8370bp|location=Sequence derived from alignment at H-paniculata_contig1598:512..8881- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1598:512..8881- >mRNA_H-paniculata_contig1598.3467.1 ID=mRNA_H-paniculata_contig1598.3467.1|Name=mRNA_H-paniculata_contig1598.3467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3126bp|location=Sequence derived from alignment at H-paniculata_contig1598:512..8881- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |