mRNA_H-paniculata_contig15978.3466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15978.3466.1
Unique NamemRNA_H-paniculata_contig15978.3466.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.700e-21
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    4 FLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELSIN 273
            +LTLYVDDLLL G+D   +  ++ +L +RF M+D+G+ SLV GME+ RDREA  LTISQE Y K+++ ++ M G  P +TPG G E+S N
Sbjct:  500 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNN 589
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.990e-21
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    4 FLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELS 267
            +LTLYVDDLLL G+D   +  ++ +L +RF M+D+G+ SLV GME+ RDREA  LTISQE Y K+++ ++ M G  P +TPG G E+S
Sbjct:  114 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEIS 201
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.110e-21
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    4 FLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELS 267
            +LTLYVDDLLL G+D   +  ++ +L +RF M+D+G+ SLV GME+ RDREA  LTISQE Y K+++ ++ M G  P +TPG G E+S
Sbjct: 1508 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEIS 1595
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.120e-20
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    4 FLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELS 267
            +LTLYVDDLLL G+D   +  ++ +L +RF M+D+G+ SLV GME+ RDREA  LTISQE Y K+++ ++ + G  P +TPG G E+S
Sbjct: 1343 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEIS 1430
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.860e-20
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    4 FLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELSINQ 276
            +LTLYVDDLLL G++   +  ++ +L +RF M+DMG+V LV GME+ RDR  G LTISQE Y+K+++ ++ M    P +TPG G ELS  Q
Sbjct:  651 YLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQ 741
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.460e-19
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    4 FLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPE 261
            +LTLYVDDLLL  ++   +  ++ +L +RF M+DMG+V LV GME+ RDR  G LTISQE YTK+++ ++ M    P +TPG GP+
Sbjct: 1008 YLTLYVDDLLLASNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYTKSILERFGMSECKPTSTPGXGPQ 1093
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.350e-19
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    4 FLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVG 255
            +LTLYVDDLLL G++   +  ++ +L +RF M+DMG+V LV GME+ RDR  G LTISQE YTK+++ ++ M    P +TPG G
Sbjct:  762 YLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGMSECKPTSTPGYG 845
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.200e-18
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    4 FLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELSINQ 276
            FLTLYVDDLLL G++  ++  ++ +L +R  M+DMG+V LV GME+ RDR  G LT SQE Y+K+++ ++ M    P +TPG G ELS  Q
Sbjct:  950 FLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQ 1040
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.990e-18
Identity = 43/90 (47.78%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    7 LTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELSINQ 276
            +TLYVDDL+++G +  ++E ++ +LM +F MS +G+VSLV GM+V+RD E G LTI+Q +YT++++A++ ME   P + P VG ELS  Q
Sbjct:  238 ITLYVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQ 327
[Close]
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.080e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    7 LTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRDREAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELSINQ 276
            LTL VDD+L+ G D  L+  L+ +L  RF M+DMG+VSL+ GM+V+   E G LT+SQ NY K ++ +  ME  +P+ TPG GPELS +Q
Sbjct: 1487 LTLDVDDILISGKDPELVAGLKKELHDRFEMTDMGEVSLILGMQVTCSYEEGTLTVSQNNYIKTILERVGMENPNPVKTPGYGPELSTDQ 1576
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15978.3466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMG0_9PHAE1.700e-2152.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE3.990e-2152.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE6.110e-2152.27Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE2.120e-2051.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE3.860e-2050.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE3.460e-1950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXM1_9PHAE6.350e-1951.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL30_9PHAE1.200e-1849.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J6N1_9PHAE1.990e-1847.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRS9_9PHAE3.080e-1850.00Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15978contigH-paniculata_contig15978:1598..1873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.8
Seed ortholog evalue9.5e-11
Seed eggNOG ortholog4081.Solyc11g062200.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929276.9145868-CDS-H-paniculata_contig15978:1597..18731622929276.9145868-CDS-H-paniculata_contig15978:1597..1873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15978 1598..1873 -
1691480797.2187362-CDS-H-paniculata_contig15978:1597..18731691480797.2187362-CDS-H-paniculata_contig15978:1597..1873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15978 1598..1873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15978.3466.1prot_H-paniculata_contig15978.3466.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15978 1598..1873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15978.3466.1

>prot_H-paniculata_contig15978.3466.1 ID=prot_H-paniculata_contig15978.3466.1|Name=mRNA_H-paniculata_contig15978.3466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
FFLTLYVDDLLLLGSDKGLLEKLELQLMRRFTMSDMGDVSLVPGMEVSRD
REAGKLTISQENYTKAMMAKYSMEGYDPLTTPGVGPELSINQ
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mRNA from alignment at H-paniculata_contig15978:1598..1873-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15978.3466.1 ID=mRNA_H-paniculata_contig15978.3466.1|Name=mRNA_H-paniculata_contig15978.3466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig15978:1598..1873- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTCCTCACCCTTTATGTGGACGACTTACTCTTGCTCGGCTCGGATAA
GGGACTCCTGGAGAAACTCGAGCTACAATTGATGAGGCGTTTCACGATGT
CGGACATGGGCGACGTATCGCTCGTGCCGGGCATGGAGGTGTCTAGGGAT
CGCGAGGCAGGGAAGCTGACCATCAGCCAGGAGAACTACACCAAGGCGAT
GATGGCCAAGTACTCTATGGAGGGGTACGACCCTCTGACCACACCCGGCG
TCGGGCCGGAGCTTTCAATCAACCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15978:1598..1873-

>mRNA_H-paniculata_contig15978.3466.1 ID=mRNA_H-paniculata_contig15978.3466.1|Name=mRNA_H-paniculata_contig15978.3466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig15978:1598..1873- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTCCTCACCCTTTATGTGGACGACTTACTCTTGCTCGGCTCGGATAA
GGGACTCCTGGAGAAACTCGAGCTACAATTGATGAGGCGTTTCACGATGT
CGGACATGGGCGACGTATCGCTCGTGCCGGGCATGGAGGTGTCTAGGGAT
CGCGAGGCAGGGAAGCTGACCATCAGCCAGGAGAACTACACCAAGGCGAT
GATGGCCAAGTACTCTATGGAGGGGTACGACCCTCTGACCACACCCGGCG
TCGGGCCGGAGCTTTCAATCAACCAATTCTTCCTCACCCTTTATGTGGAC
GACTTACTCTTGCTCGGCTCGGATAAGGGACTCCTGGAGAAACTCGAGCT
ACAATTGATGAGGCGTTTCACGATGTCGGACATGGGCGACGTATCGCTCG
TGCCGGGCATGGAGGTGTCTAGGGATCGCGAGGCAGGGAAGCTGACCATC
AGCCAGGAGAACTACACCAAGGCGATGATGGCCAAGTACTCTATGGAGGG
GTACGACCCTCTGACCACACCCGGCGTCGGGCCGGAGCTTTCAATCAACC
AA
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