mRNA_H-paniculata_contig1596.3457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1596.3457.1
Unique NamemRNA_H-paniculata_contig1596.3457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: D8LRT5_ECTSI (Serine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT5_ECTSI)

HSP 1 Score: 758 bits (1957), Expect = 3.300e-271
Identity = 384/518 (74.13%), Postives = 447/518 (86.29%), Query Frame = 1
Query:  172 MVTRGARIMAVAAFASTRCSSFLHGGSRLVRTVSR--AGTHHSCATPQIEQLTKTDDKDNGRVHDDNVRVDADDISLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEYIKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYREPV-EGEHGKSRNIACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERL 1716
            M+T  AR+MAVA FA+TRC SFL+GG+R  RT ++  A  H S    Q+EQ TK         H+   R +ADD SL++ LIS +P+LV+ H++ARRMG++S +AVHRIG+LM +RR+ I  ++ AL +R  +SAQ   IGKLMKAGQA+EA  +K EV+S N++A + EE+LN+V++E+N L MRLPNLLDSRVP+GDGE +NVVV+EWGQEYIKNGEEY+WHD++A KLGGWDPEGA R++GARFSVLKGP+AR+ERALGQWLLD+HTT+HGYTEVS+PLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLP+S VALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVK TTPEDS++EHEALTQ AEAVLKALKLPFRRV+LCSGDIGFGARLCYDLEVWMPGQ A+REISSCSNCQDFQARRM LRYREP  E +  KSRN+ CH++NGSGVAVGRALVA+LENYYNP DGSV +PDVLRPYMGG E+L
Sbjct:    1 MITPCARVMAVATFATTRCGSFLYGGARFARTGAKQFAALHSSA---QVEQTTKD--------HESLSRSNADDASLDSVLISTNPDLVVDHMKARRMGEDSVEAVHRIGDLMDNRRELIMTKEDALKQRNAMSAQ---IGKLMKAGQAKEAEEKKNEVQSINKIAGSAEEDLNEVDSELNTLLMRLPNLLDSRVPDGDGEEENVVVAEWGQEYIKNGEEYLWHDEVAIKLGGWDPEGAARISGARFSVLKGPLARLERALGQWLLDVHTTEHGYTEVSLPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPMSLVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKFTTPEDSRNEHEALTQHAEAVLKALKLPFRRVSLCSGDIGFGARLCYDLEVWMPGQGAFREISSCSNCQDFQARRMNLRYREPTPEAKKKKSRNLPCHTINGSGVAVGRALVAVLENYYNPIDGSVSIPDVLRPYMGGAEKL 504          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: A0A835YK02_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK02_9STRA)

HSP 1 Score: 602 bits (1552), Expect = 2.790e-209
Identity = 306/457 (66.96%), Postives = 367/457 (80.31%), Query Frame = 1
Query:  370 RVDADDISLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEYIKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYR--EPV--EGEHGKSRN----IACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERL 1716
            R+ AD +SL+  +++K P++VL +L+ARR G E+ + V  IG LM  R   I KRDAALN RKTLSAQ   IGKLMK G+  + A  K++V   N  A A + EL +V+  +N +FMRLPNLLD+RV +G  E DN +V EWGQEYIK G+EY+WHDDIAT+LGGWDPEGA RVAGARFSVLKG +AR+ERALGQW LD+HT +HGY EV+VPLLVTRS LEGTGQLPKFE+DLF+TNH V  EDSFLIPT EVPLTNL+RGQ+LD++ LPL+F ALTPCFRAEAGS GRDTRGLLRQHQFLKVELV+VT+   S  EHEALT  AE +L+ LKLP+R++ LCSGDIGF AR+CYDLEVW+PGQ A+REISSCSNC DFQARRMGLRY+  +P   EG+ GK +     +ACH++NGSGVAVGRALVA+LENY+NP DG+V VP+VLRPYMGG  +L
Sbjct:   80 RLSADGVSLDAQVVAKQPDIVLSNLRARRAGDEAIETVSSIGGLMEQRTGLIRKRDAALNTRKTLSAQ---IGKLMKEGKEGDVAAIKEQVAMANAEAGAADAELAEVDERVNDMFMRLPNLLDARVVDGSDEKDNELVLEWGQEYIKEGDEYLWHDDIATRLGGWDPEGASRVAGARFSVLKGQLARLERALGQWFLDVHTQEHGYQEVNVPLLVTRSVLEGTGQLPKFEDDLFQTNHKVGGEDSFLIPTAEVPLTNLVRGQMLDESDLPLAFAALTPCFRAEAGSYGRDTRGLLRQHQFLKVELVRVTSAASSADEHEALTGHAEKILQLLKLPYRKMRLCSGDIGFSARMCYDLEVWLPGQKAFREISSCSNCGDFQARRMGLRYKGKDPYAEEGKGGKGKGKQTTLACHTINGSGVAVGRALVAVLENYFNPKDGTVTVPEVLRPYMGGLLKL 533          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: A0A7S2UWA1_9STRA (Serine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWA1_9STRA)

HSP 1 Score: 556 bits (1433), Expect = 6.920e-192
Identity = 284/450 (63.11%), Postives = 353/450 (78.44%), Query Frame = 1
Query:  370 RVDADDISLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEY-IKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYREPVEGEHGKSRNIACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERL 1716
            R+D  +I+ ++  ++++ + V  HL ARR G+E  +AV +IG LM  R   I  +D AL+ RK++SA+   IGKLMKAG+ + A  +KKEVE  N+ A A E ELN+V+AE+N LF  LPNLLD R  +GD +  N VVSEWG E  +K GE+Y+WHDDIA  +GGWDP+ +  ++GARFSVL+GP+AR+ERA+GQ+ LD HT ++GY EVSVP +VTRS+LEGTGQLPKFEEDLFK NH+ A ED+FLIPT EVPLT+LLRG++LD   LP+S   LTPCFRAEAGS G+DTRGLLRQHQF KVELVK+ TPE S   HE LT  AEA L+ALKLP+R+V LCSGDIGFGAR+CYDLEVW+PGQ  +REI+SCSNC DFQARRMGLRYR  VEG+  K + + CH+MNGSG+AVGR LVAILENYYNP DGSV VP+VL+PYMGG +++
Sbjct:   46 RIDPQEIAYDSRYVAQNGDSVKAHLLARRAGEEQLEAVDKIGVLMEKRLALIKTKDGALSIRKSVSAE---IGKLMKAGEKDAAEEKKKEVEVANQQADAAEAELNEVDAEVNTLFAGLPNLLDPRTVDGDDDTQNEVVSEWGTEGGLKKGEQYLWHDDIALGVGGWDPDASSAISGARFSVLRGPLARLERAIGQFFLDEHTQKNGYEEVSVPYVVTRSTLEGTGQLPKFEEDLFKVNHVAAGEDAFLIPTAEVPLTSLLRGKVLDPKILPISLTGLTPCFRAEAGSYGQDTRGLLRQHQFHKVELVKICTPEQSFDAHEELTAHAEACLQALKLPYRKVRLCSGDIGFGARMCYDLEVWLPGQEMFREIASCSNCADFQARRMGLRYRV-VEGK--KKKTVFCHTMNGSGLAVGRTLVAILENYYNPEDGSVAVPEVLQPYMGGQKKI 489          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: W7TYV7_9STRA (Serine--tRNA ligase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYV7_9STRA)

HSP 1 Score: 523 bits (1347), Expect = 2.680e-178
Identity = 267/447 (59.73%), Postives = 338/447 (75.62%), Query Frame = 1
Query:  391 SLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEYIKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYRE-PV----EGEHGKSRNIACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERL 1716
            +L+  L+++ P+LVL HL+ARR   E   +V  I +L   R++ + ++  AL +RK+LSA+   IGKLM+  Q  EAA  K +VE  N +A+  EE+L+++  E++ L +++PNLLD RVP+GD E +N VV EWG E  K GE Y+WHDDIA KLGG+DP  A R++GARFS+L GP+AR+ERA+ Q+ LD HT ++GY EVSVP +V+RS+L GTGQLPKFEEDLF  NH V  ED+FLIPT EVP+TNL R ++L+  QLPLS+V LTPCFRAEAGS GRDT+GLLRQHQF KVELVK+TTPE S +EHEALT+DAE  L+ L+LP+R+V LCSGDIGF A  CYDLEVW+P Q  YREI+SCSNC+DFQARRM LRYR  P+    E   GK   + CH++NGSG+AVGR LVAILENY    DGSV +P+VL PYMGGT +L
Sbjct:   84 TLDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAE---IGKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLTPCFRAEAGSYGRDTKGLLRQHQFHKVELVKITTPEQSDAEHEALTRDAEECLRLLELPYRKVRLCSGDIGFAAAHCYDLEVWLPAQQTYREIASCSNCRDFQARRMALRYRPAPLGAAKEAGKGKKSTVLCHTINGSGLAVGRTLVAILENYQEE-DGSVRLPEVLVPYMGGTTKL 526          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: A0A7S3Y0F1_HETAK (Serine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0F1_HETAK)

HSP 1 Score: 518 bits (1335), Expect = 5.280e-177
Identity = 276/510 (54.12%), Postives = 345/510 (67.65%), Query Frame = 1
Query:  193 IMAVAAFASTRCSSFLHGGSRLVRTVSRAGTHHSCATPQIEQLTKTDDKDNGRVHDDNVRVDADDISLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEYIKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYREPVEGEHGKSRNIACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERLVA 1722
            ++ V+AF S    +F +G +      +R G     ++P +   T               R D D  + +   ++++PE +  HL ARR G E   +V RI EL G RR+ I +RDAAL  RK LSA+   IG+ MKAG  E AA +K EV                             NLLD+ VP GD +  N +V EW  + +K GEEY+WHD+IA KLGG+ PE A R++GARFSVL GP+AR+ERAL Q+ LDLHT +HGY EV+ P +VTRS+L GTGQLPKFE+DLFK +H  A ED+FLIPT EVPLTNL RG++L+   LPL+F A TPCFRAEAGS GRDTRGLLRQHQF KVELVK+ T E +K+EHE LT+DAE  L+ L LP+R++ LCSGDIGFGARLCYDLEVW+PGQ A+RE++SCSNC DFQ RRM LRYR     E+GK +N   H+MNGSG+AVGRALVA+LENYYNP DGS+ +P+VLRPYMGG E++ A
Sbjct:    9 VVMVSAFLSATVRNFAYGFT------TRTGLGRFRSSPVLFMSTTV------------ARFDPDGAAYDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARRELIGRRDAALGVRKALSAE---IGQAMKAGDQELAAAKKAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLDAAVPEGDDDGQNELVREWNTDNLKRGEEYLWHDEIAAKLGGFLPESAARLSGARFSVLAGPVARLERALMQFALDLHTLEHGYLEVATPYIVTRSTLRGTGQLPKFEDDLFKVSHEAAGEDAFLIPTSEVPLTNLHRGEILEGKALPLAFAACTPCFRAEAGSYGRDTRGLLRQHQFNKVELVKICTEEQAKAEHEKLTEDAEKALQLLGLPYRKMRLCSGDIGFGARLCYDLEVWLPGQEAFREVASCSNCADFQGRRMNLRYR--TVDENGKKKNAFAHTMNGSGLAVGRALVAVLENYYNPEDGSLTIPEVLRPYMGGLEKIEA 495          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: A0A7S3Z8C3_9EUKA (Serine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8C3_9EUKA)

HSP 1 Score: 506 bits (1303), Expect = 2.780e-172
Identity = 268/465 (57.63%), Postives = 331/465 (71.18%), Query Frame = 1
Query:  370 RVDADDISLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEYIKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYREPVEGEHGKS----------------RNIACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERL 1716
            RVDA  +  +  L+  +PE+VL HL+ARR  ++   AV  I +L   RR  I +RDAALNKRKTLSA+   IGKLMK+G    A   K +V + N  AA  E  L +V  E N LF RLPNLLD RVP+GD E +N +V+ WG+EYIK GE+  WHD++A  LGG+ PE AV+V+G+RFSVL+GP+AR+ERAL  ++LD HT +HGY E SVP LV+R  LEGTGQLPKFE+DLFKTNH ++  DSFLIPT EVPLT+L R  +L ++ LP+  V  TPCFRAE+ S GRDTRGLLRQHQF KVELV +++ E+S   HE +T+ AE +L+ LKLP+R+V LCSGDIGF AR CYDLEVWMPGQ  +REI+S SNC DFQARRMGLRYR   + +  K                 + + CH++NGSGVAVGRALVA+LENY NP DGSV VP+VL PYM G   L
Sbjct:   16 RVDAQTVDYDLRLLQDNPEVVLEHLKARRAKEDVLAAVGTISKLNERRRQLIKERDAALNKRKTLSAE---IGKLMKSGDQAAAEEIKAQVSAANAQAAEAEATLAEVEGECNALFARLPNLLDQRVPDGDSEENNELVTLWGEEYIKKGEDMKWHDELAATLGGYAPEAAVKVSGSRFSVLRGPLARLERALSAFMLDTHTLEHGYEEHSVPYLVSRQVLEGTGQLPKFEDDLFKTNHDISGMDSFLIPTAEVPLTSLYRDDILQESNLPIKLVGHTPCFRAESDSGGRDTRGLLRQHQFHKVELVCISSKENSNEVHEKMTEHAETILRKLKLPYRKVRLCSGDIGFSARHCYDLEVWMPGQDQFREIASISNCGDFQARRMGLRYRPAEKDDAEKDEXXXXXXXXXXXXXXKKTVHCHTLNGSGVAVGRALVAVLENYQNP-DGSVTVPEVLVPYMNGVTVL 476          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: A0A8J5X803_DIALT (Serine--tRNA ligase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X803_DIALT)

HSP 1 Score: 473 bits (1218), Expect = 3.700e-159
Identity = 258/452 (57.08%), Postives = 315/452 (69.69%), Query Frame = 1
Query:  391 SLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEYIKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYREPVEGEHGKSRN----------IACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERL 1716
            SL+  L+S SP++V   L+ RR   E   A+  IGEL         +  + L  RK LS Q   IG L+K G   EA   K++V + +  A   EE L  V  E   L   LPNLLD RVP+G  + DN +VS+W        E   WHD+IAT+LGG D +GA +++GARFSVL+GPIAR+ERAL  + LDLHT QHGYTE++VP++V R +LEGTGQLPKFE+DLFK +  V   D+FLIPT EVPLTNLL G++L +A LPL+FVALTPCFRAEAGS GRDTRGL+RQHQF KVELV++T   DS ++HEALT+ AEA L+AL+LP+RR+ LCSGDIGF AR CYDLEVW+PGQ A+REISSCSNC DFQARRM LRYR       G  +             CH++NGSG+AVGRALVA+LENY  P DGSV VP+VLRPYMGG  R+
Sbjct:   56 SLDAKLVSDSPDVVAESLRRRRAPAEQLRALETIGELQRRYAQLSFEVSSQLGVRKQLSPQ---IGALLKQGNEAEAEVLKEQVAAASAEAKRLEELLAAVELERAALLDALPNLLDPRVPDGADDTDNELVSQWQPAAGVRPETGDWHDEIATRLGGLDVDGAAKISGARFSVLRGPIARLERALANFFLDLHTGQHGYTEMAVPVIVGRGALEGTGQLPKFEDDLFKLSAPVNGRDAFLIPTAEVPLTNLLAGEILPEASLPLAFVALTPCFRAEAGSYGRDTRGLIRQHQFAKVELVRITAAHDSDAQHEALTRHAEACLEALELPYRRMRLCSGDIGFSARHCYDLEVWLPGQGAWREISSCSNCGDFQARRMALRYRPAAAAPDGDGQKKGGKAAAPKPTLCHTINGSGLAVGRALVAVLENYAQP-DGSVIVPEVLRPYMGGLARI 503          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: A0A7S3T3K2_9SPIT (Serine--tRNA ligase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T3K2_9SPIT)

HSP 1 Score: 464 bits (1193), Expect = 1.020e-155
Identity = 242/444 (54.50%), Postives = 313/444 (70.50%), Query Frame = 1
Query:  394 LETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEY-IKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYREPVEGEHGKSRNIACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERLVA 1722
            L+  LI++ PE+V   L+ R+   E   AV RIGEL  +R   +   +AA  +RK LS +   IG L+KAG  + A   K++V   ++ AA  +E++  V +E + LF  LPNLLD R P+G  E DNV V EWG +  + +G    WHD+ A  LGG D + A +++G+RF+VL+GPIAR+ERA+  + LD+HT++HGY EV+VP +V   +L GTGQLPKF+EDLFK +  V   +++LIPT EVP+TNL  G +L++A LP+S+V  TPCFRAEAGS G+DTRGL RQHQF KVELVK+TTPE S +EH AL   AE  LK LKLP+R++ LC GDIGF A+LCYDLEVW+PGQ  +REISSCSNC  FQARRM LRYR    G   K + + CH++NGSG+AVGR LVAILENY N  DGS+ VP+VLRPYMGG E + A
Sbjct:   47 LDERLIAEQPEMVRHSLRRRQASDEVIAAVERIGELTRERATLVELGNAARAQRKALSPK---IGALLKAGDTQAAEELKEDVARASKEAAEADEKMEAVESERDSLFATLPNLLDERTPDGVDEEDNVCVDEWGTDRDLPSGR--TWHDEAAAALGGLDMDAAAKLSGSRFAVLRGPIARLERAIANFFLDVHTSEHGYREVNVPFIVGAETLRGTGQLPKFQEDLFKLSEPVNGREAYLIPTAEVPITNLHAGDILEEASLPISYVGYTPCFRAEAGSHGKDTRGLFRQHQFYKVELVKITTPEQSDAEHHALVAHAEECLKRLKLPYRKMMLCGGDIGFSAQLCYDLEVWLPGQGKFREISSCSNCGSFQARRMNLRYRPTAAGTDKKQKPVHCHTINGSGLAVGRTLVAILENYQNE-DGSITVPEVLRPYMGGLEVIRA 484          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: A0A7S3MC65_9STRA (Serine--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MC65_9STRA)

HSP 1 Score: 464 bits (1193), Expect = 4.120e-155
Identity = 247/463 (53.35%), Postives = 326/463 (70.41%), Query Frame = 1
Query:  367 VRVDADDISLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEYIKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYR------EPVEGEHGKSRNIAC-------HSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERL 1716
            VR  A+++SL+T+L+S+ P+LV+ HLQ+R++   + D V  + +L  +R+  I   + A N RK LS +   IG L+K  + +E A  K +VE+ ++ ++A +E+L  +   I+ ++  LPNLLD  VP G  EA NVV   WG E  K GEEY+WHDD+A K+ G D E A R++GARFSVL GP+AR+ERAL Q++LD HT + GYTEVSVP +V+RS+LEGTGQLPKFE+DLF+ NH    E++FLIPT EVPLTNL R Q+L ++ LPL  V  +P FRAEAGS GRD RGLLRQHQF KVE+V++ TPE+S +EH ++ QDAE +L +L+LP+RRV LCSGD GF AR CYDLEVW+PGQ  YREISS SNC DFQ+RRMG RYR          GE G  +N+         H++NGSG+AVGR L+AILEN   P DGS+ +P+ LRPYM   + +
Sbjct:   48 VRPPANELSLDTNLLSEQPDLVISHLQSRKVDPLTLDKVFAVKDLQTERKTLIFNSNTAKNVRKVLSKE---IGALLKQEKHDEVAELKAKVEAAHQTSSAADEKLTHIEKSIHDIWASLPNLLDDSVPEGHDEAHNVVEFTWGAENRKIGEEYLWHDDLARKVHGIDLEAANRMSGARFSVLLGPVARLERALTQFMLDRHT-ERGYTEVSVPFIVSRSTLEGTGQLPKFEDDLFQVNHTAGGEEAFLIPTAEVPLTNLFREQILYESDLPLRLVCASPSFRAEAGSNGRDVRGLLRQHQFNKVEMVRICTPENSAAEHLSMVQDAEHILHSLQLPYRRVLLCSGDTGFSARKCYDLEVWLPGQQMYREISSVSNCFDFQSRRMGFRYRIGHQSTSAEGGEKGTKKNVNVQKKTSFPHTLNGSGLAVGRTLLAILENNQQP-DGSITIPEALRPYMNNWQSI 505          
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Match: F0Y990_AURAN (Serine--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y990_AURAN)

HSP 1 Score: 462 bits (1189), Expect = 5.710e-155
Identity = 253/462 (54.76%), Postives = 324/462 (70.13%), Query Frame = 1
Query:  370 RVDADDISLETSLISKSPELVLGHLQARRMGQESTDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAE-EAATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEADNVVVSEWGQEYIKNGEE--YIWHDDIATKLGGWDPEGAVRVAGARFSVLKGPIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDLFKT-NHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAEAGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALKLPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRMGLRYR-EPVEGEH-------GKSRNIACHSMNGSGVAVGRALVAILENYYNPADGSVEVPDVLRPYMGGTERLV 1719
            R  A  +SLE   +    + V  H++AR+  +E+  +V R+  L   R     +RDAAL+ RK LS     IGK MK G AE + A  K EV ++ ++A   E  +  +  E N LF  LPNLLD   P+G GE +NVVV+EWG +  K G+E  Y+WHDD+A  LGG+D E A +V+GARF+VL+G +AR+ERALG + LD+HT   GY EVS P++V RS+LEGTGQLPKFE+DLFK  NH V  ED+FLIPT EVPLTNL+ G +L+++ LP+   ALT CFRAEAGS GRDTRGL+RQHQF KVELVK+  P+D  +EHEAL  DAE  L+ L LP+R+V+LC+GDIGF AR CYDLEVW+PG   YREISSCS   D+QARRMGLR+R +P + ++       GK + +  ++MNGSG+AVGRALVA+LEN+ NP DGSV VP  LRPYMGG E ++
Sbjct:   33 RPSAAGVSLELRTLKDHADTVKAHVRARQGSEETVASVDRMVALTEQRAAAQRERDAALSTRKALSGD---IGKAMKTGAAEADVAALKAEVAASADVAEGAEATMAALEEEANALFAALPNLLDDATPDGAGETENVVVAEWGTDSRKLGDEGDYLWHDDLAAGLGGFDAEAASKVSGARFAVLRGGVARLERALGAFFLDMHTDGGGYEEVSSPVIVARSALEGTGQLPKFEDDLFKLDNHKVRGEDAFLIPTAEVPLTNLVAGDILEESDLPIRVAALTHCFRAEAGSYGRDTRGLVRQHQFAKVELVKIVAPDDGVAEHEALVADAEKCLQMLDLPYRKVSLCAGDIGFSARRCYDLEVWLPGPQEYREISSCSLMGDYQARRMGLRFRPKPAKDDNDGGKKKKGKPKPLFPYTMNGSGLAVGRALVAVLENHQNP-DGSVTVPRALRPYMGGAESII 490          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1596.3457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRT5_ECTSI3.300e-27174.13Serine--tRNA ligase n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YK02_9STRA2.790e-20966.96Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2UWA1_9STRA6.920e-19263.11Serine--tRNA ligase n=1 Tax=Fibrocapsa japonica Ta... [more]
W7TYV7_9STRA2.680e-17859.73Serine--tRNA ligase n=3 Tax=Monodopsidaceae TaxID=... [more]
A0A7S3Y0F1_HETAK5.280e-17754.12Serine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S3Z8C3_9EUKA2.780e-17257.63Serine--tRNA ligase n=1 Tax=Lotharella globosa Tax... [more]
A0A8J5X803_DIALT3.700e-15957.08Serine--tRNA ligase n=1 Tax=Diacronema lutheri Tax... [more]
A0A7S3T3K2_9SPIT1.020e-15554.50Serine--tRNA ligase n=1 Tax=Strombidinopsis acumin... [more]
A0A7S3MC65_9STRA4.120e-15553.35Serine--tRNA ligase n=1 Tax=Spumella elongata TaxI... [more]
F0Y990_AURAN5.710e-15554.76Serine--tRNA ligase n=1 Tax=Aureococcus anophageff... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1596contigH-paniculata_contig1596:5972..13181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score764.2
Seed ortholog evalue3.9e-218
Seed eggNOG ortholog2880.D8LRT5
KEGG rclassRC00055,RC00523
KEGG koko:K01875
KEGG ReactionR03662,R08218
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004828,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.seryl-tRNA aminoacylation
EggNOG OGsCOG0172@1,KOG2509@2759
Ec32 ortholog descriptionSerine-tRNA ligase, type1
Ec32 orthologEc-08_002360.1
EC6.1.1.11
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons10
Model size1731
Cds size1560
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929275.0416093-UTR-H-paniculata_contig1596:5971..61421622929275.0416093-UTR-H-paniculata_contig1596:5971..6142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1596 5972..6142 +
1691480796.6193714-UTR-H-paniculata_contig1596:5971..61421691480796.6193714-UTR-H-paniculata_contig1596:5971..6142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1596 5972..6142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929275.0567517-CDS-H-paniculata_contig1596:6142..64671622929275.0567517-CDS-H-paniculata_contig1596:6142..6467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 6143..6467 +
1691480796.6374817-CDS-H-paniculata_contig1596:6142..64671691480796.6374817-CDS-H-paniculata_contig1596:6142..6467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 6143..6467 +
1622929275.0727787-CDS-H-paniculata_contig1596:9375..94611622929275.0727787-CDS-H-paniculata_contig1596:9375..9461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 9376..9461 +
1691480796.6476011-CDS-H-paniculata_contig1596:9375..94611691480796.6476011-CDS-H-paniculata_contig1596:9375..9461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 9376..9461 +
1622929275.1366618-CDS-H-paniculata_contig1596:9774..98821622929275.1366618-CDS-H-paniculata_contig1596:9774..9882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 9775..9882 +
1691480796.6576002-CDS-H-paniculata_contig1596:9774..98821691480796.6576002-CDS-H-paniculata_contig1596:9774..9882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 9775..9882 +
1622929275.1531036-CDS-H-paniculata_contig1596:10234..103661622929275.1531036-CDS-H-paniculata_contig1596:10234..10366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 10235..10366 +
1691480796.6668267-CDS-H-paniculata_contig1596:10234..103661691480796.6668267-CDS-H-paniculata_contig1596:10234..10366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 10235..10366 +
1622929275.170727-CDS-H-paniculata_contig1596:10574..107261622929275.170727-CDS-H-paniculata_contig1596:10574..10726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 10575..10726 +
1691480796.6756818-CDS-H-paniculata_contig1596:10574..107261691480796.6756818-CDS-H-paniculata_contig1596:10574..10726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 10575..10726 +
1622929275.1864493-CDS-H-paniculata_contig1596:11016..112181622929275.1864493-CDS-H-paniculata_contig1596:11016..11218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 11017..11218 +
1691480796.6842568-CDS-H-paniculata_contig1596:11016..112181691480796.6842568-CDS-H-paniculata_contig1596:11016..11218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 11017..11218 +
1622929275.198769-CDS-H-paniculata_contig1596:11634..117361622929275.198769-CDS-H-paniculata_contig1596:11634..11736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 11635..11736 +
1691480796.6933744-CDS-H-paniculata_contig1596:11634..117361691480796.6933744-CDS-H-paniculata_contig1596:11634..11736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 11635..11736 +
1622929275.2112892-CDS-H-paniculata_contig1596:12334..124181622929275.2112892-CDS-H-paniculata_contig1596:12334..12418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 12335..12418 +
1691480796.7035275-CDS-H-paniculata_contig1596:12334..124181691480796.7035275-CDS-H-paniculata_contig1596:12334..12418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 12335..12418 +
1622929275.225952-CDS-H-paniculata_contig1596:12582..127771622929275.225952-CDS-H-paniculata_contig1596:12582..12777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 12583..12777 +
1691480796.713654-CDS-H-paniculata_contig1596:12582..127771691480796.713654-CDS-H-paniculata_contig1596:12582..12777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 12583..12777 +
1622929275.2424662-CDS-H-paniculata_contig1596:13007..131811622929275.2424662-CDS-H-paniculata_contig1596:13007..13181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 13008..13181 +
1691480796.7273855-CDS-H-paniculata_contig1596:13007..131811691480796.7273855-CDS-H-paniculata_contig1596:13007..13181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1596 13008..13181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1596.3457.1prot_H-paniculata_contig1596.3457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1596 6143..13181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1596.3457.1

>prot_H-paniculata_contig1596.3457.1 ID=prot_H-paniculata_contig1596.3457.1|Name=mRNA_H-paniculata_contig1596.3457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=520bp
MVTRGARIMAVAAFASTRCSSFLHGGSRLVRTVSRAGTHHSCATPQIEQL
TKTDDKDNGRVHDDNVRVDADDISLETSLISKSPELVLGHLQARRMGQES
TDAVHRIGELMGDRRDFIAKRDAALNKRKTLSAQARIIGKLMKAGQAEEA
ATQKKEVESTNELAAATEEELNKVNAEINGLFMRLPNLLDSRVPNGDGEA
DNVVVSEWGQEYIKNGEEYIWHDDIATKLGGWDPEGAVRVAGARFSVLKG
PIARMERALGQWLLDLHTTQHGYTEVSVPLLVTRSSLEGTGQLPKFEEDL
FKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPLSFVALTPCFRAE
AGSAGRDTRGLLRQHQFLKVELVKVTTPEDSKSEHEALTQDAEAVLKALK
LPFRRVNLCSGDIGFGARLCYDLEVWMPGQSAYREISSCSNCQDFQARRM
GLRYREPVEGEHGKSRNIACHSMNGSGVAVGRALVAILENYYNPADGSVE
VPDVLRPYMGGTERLVATS*
back to top

mRNA from alignment at H-paniculata_contig1596:5972..13181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1596.3457.1 ID=mRNA_H-paniculata_contig1596.3457.1|Name=mRNA_H-paniculata_contig1596.3457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7210bp|location=Sequence derived from alignment at H-paniculata_contig1596:5972..13181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGATTGGTGTTCTATCGTGATTGGTCATTTCCTCCCGCATATGTAATTG CGCCGTGTGATAGAGGAGACATGGAGGAGTTGTAATGTTGAATGTTGATT ATTGAGGTATTGTGGTCAGAAGGAGGAGGAGCTGACTGGCACACACGCTG TAGTTGTGAAGGATTTCTCCAATGGTCACACGTGGGGCTCGAATCATGGC GGTGGCCGCCTTTGCGTCGACTCGTTGTAGTTCCTTCTTGCATGGCGGCT CGAGGCTGGTTCGAACTGTGTCACGTGCTGGCACTCACCATAGCTGCGCA ACACCGCAAATTGAGCAGTTGACCAAAACTGATGATAAGGATAACGGCAG GGTTCATGATGATAATGTCAGGGTTGATGCCGATGACATATCGCTCGAAA CCTCTCTTATCTCAAAGAGTCCCGAACTGGTTCTAGGACATCTGCAAGCT AGGAGAATGGGACAGGAGAGCACTGATGCTGTGCACAGGATTGGAGGTAT AGCGTTAGTGAGTTGAGCTCGACAGAGTACACACTACATGAACTTCTTTA CATGACTCAAAAGCCGGTGACTACTGACTTCTGACTACCGTGCGCAATGC ATTGTAACTTGAGGTGGCGCTGACCAGAGAAAACAACAAAAGAACAAGAG GATGAGGAAACCTGGGGAAGGAACACTGTCTGGGTACCTTGGTGTTACTA CTCAACACCTCGTAAGAGCGTAAGAGTGAATGAACTACCTTCTTATCTCT TCAGTCAGCGTGATTTGTTCCGAACTCGGAACAATTTAATATTCGTACAG GCCACACACAAATACTCTCGTACGCATAGTGGAGCACAGCGATTTGAACG AGTGATGTTTTTTATTCCGATTATTGGATACATTCAGTCACTTCACGCAA CAGCATCAACAGGTTGTTCTGGTTTACAGCTCGGTGCACAGCTGCAGAGG GGTAGAAAGAACCACACGGGTTCCCAACACAAGTTGATATGTATCGTAGG GATGATATCGTACCAGCAACCCTCTTCTTAGCTGATCTGTCAACGTGGGC AGAGGTTTGGGACTTTTGTGCATTTTATGTACCTGGGCATTATGTTTATA TTATTATAACATGCGGGAATTCCGTTTTTCCGAGAGTCGATATACGGAAT TCATGCGGAATTTTCAGAGTCTATTTTTGACGTGGTCGATGTGGTGATGT TTTTTCCTTCTTGTTTTGGTCAGAAAAATATTTCTTATACACTTTGGTGT TTATTTACTTTTTTCGGTGTTTCGTATTTGGGATGCAGGCGTCTAACCAA GCAGTCCATCAACAGACAGTCCTAGTTGCCGTTGGATGAAATCGTTACTC AGCAGAAACCTGTGGTTTCAATTATGACGTCGCTGAGACACACTGGTCGC TTTCGCGAGAGTGGCATCATATTTGTGAAGCTCATTGAGACTTTTTTTTC CGGGTGCCCAAATTATCTTCTACGCGTGTCGTTGTCGATGTTTTCGCGGG CAGAACATCAAACCGATTTCTATCGTAAGAGTACGTAAAATCGTTGCACA GCCAGCCGGAAGGAAGCACAGTTTCCCGGCACTATGGTGAAGTTGATCAT ATTATTGCAGTAGCGGTGGTTTGTCTAAAGTGCTAATATCGTACTTGTTG TCAACATGCGTCAAGTATTTTTTTATGATGCCGCAGTGCAAAACTTCCTA CGATCTGTCGTTTTTTGGTCCAACTGGCTGTATGCTTGAATCTACAGCAG CCGGCCTCGTGACACGCCGGACTGAAACGTAGACCCCCCACATCGAAATT CGTGCGAGCGATAAATGACGGAGTTGCTGAAAATATGGTCTTCACTCAAT CGCTAAAGTGCCATGTGTCTGTGGGCCTCTCGAACAGTACAGAGCTCTCA GCCCGCGTACAGACAGAAGCAGCATACATCGAATTTTACCTGTTTCTTCG CGGGCGTAAATCGAAAAAAGAACAACCCACATCACAATGCGACCAAGGTA GTGGCAACGTTTATCGTTTGGATCCGTAATCGTTCCGCAGCCGAGACTAC GATGGTGTCGATGAGAGTTTTTCAGTATACCCGCCCGTTCTTTGCCGAGA ACATTATCGTGTTAAGGAGTTCTCAAAATGCATCGAGCTGCAAGCTGGCT GGCAGCGCGCTTGATGAATCGCGCAATGCCAGCAAAGTACCAGTGTTGAC TGACACTTTACATTCTTGATTCTTTTTACAAACTACAACCTGGTCTACCT ATTGTAGCGCAACCCGAAACGAAGCTCTTATCCCCGAGAATAGATGGGTA CCCGGGGTGAGAGGGATTCCAGGAGATGCCTTTTTAGCTCAGGCGAATAT CATCGTAATTTTGCAGCTCTCAGGCTAAATAGGTATCGAGCGTGGAGGGA TGCCAGAACAATCTCTGGGGAAAAAATACAAATCGGAACATCAAGTTTGA TGCAAAGACTGTGCCAGCACACTCGGACCTTCTCTTTGTTACGCACTGGG CGGGGGGGCGGTGGGCGGGGGTACGCGCGTTTTTCGTGTCGTAGTTGTTA TGCCATTGACCACGCATCCTCGGGAGGGCGGAACTTTGTTCCTATCAGGC GATTTCCGATGGCTACTCACTTTTTCCTAGGTTGCCAAATGTGGCTCAAA AATCTCTCACCTACCTTATTTCCATCCTCTGGAATTGATGTCGTCATATT TTCGCAATGTCAGGATCCAATAGCCTCTCTAACGCATTTTTAAATTCGTC GATGTTCTTATTCTATAGTGTTCTTCCTATCCTGGATAATTACCTCTACT CTATACATGTCTACGCAAATCCATCCTACTATATTTCAATCTTCCTTAAC CCTCTCTGATTCAACTTTCCTTTCTCAATACTCCAACTATTCTGTCGTTC AGGAGTTTACAAAAAAAATAACTCGCCCTTTGTTCAAGTCTGTTCAAGAG CGTAATACTTAGGTAGGTACGTACCTGAGTCTGTTTTATCTATTTCTTGA GTAAGTTTACAACAATAGTGCCGTCATTCCCACCATATCTTTGCTGATGA CTGTTGCAACGCTTGCCGTGTGCTCCATTCTGTTTCAACAGTGCTTTCGA GAGGTCGCCAAAGATACTCATTTCTAGCTGGAAATAGAAAGAACACGAGC AGAGTCTTTCTGAACCTCCCAAGTACACCTTGTGCAGGCAGTGCGATGGT AGCTGTACATTTGTTGAATGCTTTGCGATGTGCTCAGTCATCACATCTAG TAAACAAGTCCGTCCTATATTTCAACTGATGTCATTGCTTACCCTCTCTT TGTGAGAACTTATTGAACATTGTTTTTTCTTTCACCATGCGGTTTGGTGC TTTTCTGTCGCCCTGTTGTGTGCATGGAATGGCGCCCGCGCTCGGGTGGA GCAGAGTTAATGGGGGACCGGCGTGACTTCATCGCCAAGAGAGATGCGGC CCTCAATAAGCGCAAGACGTTATCTGCGCAGGCGAGAATCGTAATTCATT CGTGTTTTTCAATGCTTGAATCAGCTGCTGTGCCATCACCTTTTTGTGTG ACAGTCTCCGAACTACGATATCATAAGCATCTCGTAATCAACTATGCCGT CCTAAACCTGGGCATGTACGTATCTCGTTTACCCTCCGTAGCGTTCAAAA TATTATCATTCGCGCTGTGAACCAGTGGAGACGACGGAATTTCCGAGCGT CCCGCTAGCATATTGATAGAACTGTGGCATTGCGGTCTGCGTGGGTAGCT AGCTTCTTGTTCATGAAAAGATGATTAATCACGACACCTCGCGTTCCTGG CAGATCGGGAAACTCATGAAGGCAGGGCAAGCTGAGGAAGCCGCGACGCA GAAGAAAGAAGTTGAAAGCACCAACGAGTTAGCAGCTGCGACGGAAGAGG AGCTGAACAAGGTATGTTTGTTTCCGTCACATGCTTGTATTCGCGCGTTT ATCTCTTGTCTGGGTCACTAATCAATGCAATAGAAATTTACTTCGCAACC TGGCATGCATCGTGATCGAATAATTGACCTGTGCTTCACGCAGTTGTATC CATCTTCAATCGATTATCCCGACTGACATCAGCGTATGTTGTTGCGATCA TCCAACCCAGTAATCCTCTCAGGGTCCCTCCCCGTATTCTTGCGGTACGA GAAATTCTCAATCAAAGCTCCGCCGTGAGACGATGGAGCAACAGTGTGTA ACGAGTAACGAGCGTTTTGATAGTGTTTATTCGGTCATTGAAACTGACCC CGCATTTTGGCAGGTAAATGCTGAGATCAATGGACTGTTCATGCGCCTTC CAAACCTGCTGGACTCAAGGGTTCCGAATGGTGATGGAGAGGCGGACAAT GTAGTCGTGAGCGAATGGGGCCAGGAGTATATCAAGAATGGAGAGGTGAT GACAGGCGCAAAGCCTTTTGTGAGATCCGAGTCGACCTTTCGTTTCGCTT CTAATGTTGATTGCGACTGCTTTCTTAAAGTTGCCACTGCGTAAGAAGAA TTTGTGTGTGCACTAGAATAATTAACATACTATTTTACTTGCTCTACGCC AGGGGGTGTTCCTACTAAAACGGCATACCTAACCGACCTGTTGCCATTTG CAGGAGTATATTTGGCACGATGACATAGCGACTAAACTTGGAGGATGGGA CCCAGAAGGAGCAGTGCGAGTAGCTGGTGCAAGGTTCTCCGTGTTGAAAG GTCCAATTGCAAGAATGGAGCGAGCGTTAGGTCAATGGCTGCTCGATCTA CATACGTAAGTTTCTTCCTGTATGCGGGCTTATTTTAAGCGCGGGCCAAA CACTCGGCCATGGCGAAATGCATCTGCTGTTCAGTTTCCCCAGCTGCTTC CAAGTGACAAGTTCTTGCCATCCCTATAGAGTACACGTTCTTGGTCCAGT GGGATGGATGTACCAGTGATCGTGTATACAGATAGGGCCGACCGTCGCAG CAGGAAAAACTTCAAAGTGCGCCATTTTTACCCTGTGTACGAAAGATGAA TAGCCTCTTCTGACGGTTTGCCAAACCATTCATTCATGGCCCTAGAACTC AGCATGGGTATACGGAAGTGTCTGTCCCGCTGCTGGTGACAAGGAGCTCT TTGGAAGGCACGGGCCAACTGCCGAAGTTTGAGGAAGACCTCTTCAAAAC AAACCATCTGGTGGCTAACGAGGATAGTTTCTTAATTCCGACGGGAGAGG TGCCTTTGACGAATCTTCTCCGAGGCCAGTTGTTGGACAAGGCTCAGGTG AGACTGGTTCACTGCCCGAAAGGGCCTTGCTCTTCCTACCCTCTGATTCC GTCTCTACCCTCAGTTTCGTTGAAGAAAATTCCATCCGCGCAGTGAACGC AACTGATCCCATATGATTCGAAACCTTAAGAGAGCAATTTCCTTTCTCGA TGGAAGCTATGTTGCGTCGGTGGATTTTCAATAACCTCATGCGGTCCCAA TGTCCTCTAGAGCGTATAATGCGATGGCTCCGCTTTTGATATTTTTTCGA AAAAGTTTGGGCTTGTGCTTTTCTCATTTTGGCTGGAGCACTGTTGCTAG AGCAGTTGTCGCGGATGGCATCTGTATGAACACCTGGGAAGCCCTAGTGT GGCTATGAGGGCATATGTTGTCACTACTGACGCTATCGCTCTTTCCTGCT CACCTCCGTGCAGCTACCACTATCTTTTGTGGCTCTTACACCGTGTTTCA GAGCGGAGGCAGGGTCGGCCGGACGAGATACCCGCGGATTACTTCGCCAA CATCAATTTTTAAAGGTGCGAAAAGAGCGCTACGCCACCCCGAATGCAAA CATCATGCATCCCGGGGTCAACTCTAAGCTAGTGAGATAATCTGTTTGGC ATCGATTTTATTCAGCAACTCATGAAGATTATACCTCTAGCTGAGAAAGT AGCCATGTCCGTCCAGTGTAGCAGTCAAGTGGCACCGAACCCTTTGTTGT TGCATGCGTAAGGTGCGAGGTCGCCTGGAGCGGTTCCCATTTGTTTTTTC ACTATTTGGCCATGGAGTTGCAAGTGTTACCTTCGCATGTGACTGGGACG GCGAATTATTCGAGTGTAATTCCATGTTTTTTGCTATGCGTGTGTAGGTG CATATCCTGTGGATATCAAGTGCTGTTGTCACGCCCTTCGCTAATTCCTT TGGGTTGATAGGAACTGTCTCGGCGCTAGTCCTTGAAAATGGTCACACAC TCCCTATCGTAGTCCCAGTCCCCCTGCCCCAAACGTGCACACGTTTCTAG CGGCGAAGAAACTGTATGATGAGCCCTCTGATGGATATTTCGGTTGATCT CTCCACAAAACGCCGAGATAATTGAACGGAACACTCTGTGCTTCCCTCGA CCTATTCTTTTAGGTAGAACTGGTCAAGGTTACTACGCCAGAGGACAGCA AAAGCGAGCACGAAGCGCTGACACAAGACGCAGAGGCCGTGTTGAAGGTT AGTCCGCCATATTGCTTTTGTCTGGGTCGCGCGACGTGGTCGTGAGTGAA AGCTAAAGTAAATGTTGCTTATAGCAATCTTAGAGGTATGTACGTCCACT CTCAACAGAATGCACATACCACTGACACCGTTCTCTCGCTGCCATTCGGC GTTCTGCACAGGCGTTGAAGCTGCCGTTTCGGCGAGTAAATTTATGTAGC GGGGATATTGGGTTTGGCGCTCGCTTGTGTTACGACTTGGAAGTTTGGAT GCCTGGACAAAGTGCATACCGGGAAATATCGTCATGCAGCAACTGCCAGG ACTTTCAGGCCCGTCGCATGGGTCTGCGCTACCGTGAACCAGTAGAAGGT GAACACGTCGCCTGTATTGTTCTTGGAAGTTAAGTACTGCTATTAGGTAA AGTTGTCGATAGTTTGGCGGTACATCTGGATGACCATACTGCGCAAGAAC ACGATATGCATTCACCATGATGCAGGTCCATGAAGTTTTGGAACCCCAAG TTAGGAACTATATTGCTGATCGTATATTTCCCACGTTTGCCGCTGCAACG GTTTTTTGTCGCCATCGTTTGTGTTCCACAGGCAAGGGCAAGTCACGCAA CATTGCCTGCCACAGTATGAACGGATCAGGTGTAGCAGTGGGTCGAGCAC TCGTAGCCATATTAGAAAATTACTACAACCCCGCGGATGGGTCTGTCGAG GTGCCGGATGTCCTGCGCCCATACATGGGTGGAACTGAAAGATTAGTTGC CACCTCGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1596:5972..13181+

>mRNA_H-paniculata_contig1596.3457.1 ID=mRNA_H-paniculata_contig1596.3457.1|Name=mRNA_H-paniculata_contig1596.3457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3120bp|location=Sequence derived from alignment at H-paniculata_contig1596:5972..13181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCACACGTGGGGCTCGAATCATGGCGGTGGCCGCCTTTGCGTCGAC
TCGTTGTAGTTCCTTCTTGCATGGCGGCTCGAGGCTGGTTCGAACTGTGT
CACGTGCTGGCACTCACCATAGCTGCGCAACACCGCAAATTGAGCAGTTG
ACCAAAACTGATGATAAGGATAACGGCAGGGTTCATGATGATAATGTCAG
GGTTGATGCCGATGACATATCGCTCGAAACCTCTCTTATCTCAAAGAGTC
CCGAACTGGTTCTAGGACATCTGCAAGCTAGGAGAATGGGACAGGAGAGC
ACTGATGCTGTGCACAGGATTGGAGATGGTCACACGTGGGGCTCGAATCA
TGGCGGTGGCCGCCTTTGCGTCGACTCGTTGTAGTTCCTTCTTGCATGGC
GGCTCGAGGCTGGTTCGAACTGTGTCACGTGCTGGCACTCACCATAGCTG
CGCAACACCGCAAATTGAGCAGTTGACCAAAACTGATGATAAGGATAACG
GCAGGGTTCATGATGATAATGTCAGGGTTGATGCCGATGACATATCGCTC
GAAACCTCTCTTATCTCAAAGAGTCCCGAACTGGTTCTAGGACATCTGCA
AGCTAGGAGAATGGGACAGGAGAGCACTGATGCTGTGCACAGGATTGGAG
AGTTAATGGGGGACCGGCGTGACTTCATCGCCAAGAGAGATGCGGCCCTC
AATAAGCGCAAGACGTTATCTGCGCAGGCGAGAATCAGTTAATGGGGGAC
CGGCGTGACTTCATCGCCAAGAGAGATGCGGCCCTCAATAAGCGCAAGAC
GTTATCTGCGCAGGCGAGAATCATCGGGAAACTCATGAAGGCAGGGCAAG
CTGAGGAAGCCGCGACGCAGAAGAAAGAAGTTGAAAGCACCAACGAGTTA
GCAGCTGCGACGGAAGAGGAGCTGAACAAGATCGGGAAACTCATGAAGGC
AGGGCAAGCTGAGGAAGCCGCGACGCAGAAGAAAGAAGTTGAAAGCACCA
ACGAGTTAGCAGCTGCGACGGAAGAGGAGCTGAACAAGGTAAATGCTGAG
ATCAATGGACTGTTCATGCGCCTTCCAAACCTGCTGGACTCAAGGGTTCC
GAATGGTGATGGAGAGGCGGACAATGTAGTCGTGAGCGAATGGGGCCAGG
AGTATATCAAGAATGGAGAGGTAAATGCTGAGATCAATGGACTGTTCATG
CGCCTTCCAAACCTGCTGGACTCAAGGGTTCCGAATGGTGATGGAGAGGC
GGACAATGTAGTCGTGAGCGAATGGGGCCAGGAGTATATCAAGAATGGAG
AGGAGTATATTTGGCACGATGACATAGCGACTAAACTTGGAGGATGGGAC
CCAGAAGGAGCAGTGCGAGTAGCTGGTGCAAGGTTCTCCGTGTTGAAAGG
TCCAATTGCAAGAATGGAGCGAGCGTTAGGTCAATGGCTGCTCGATCTAC
ATACGAGTATATTTGGCACGATGACATAGCGACTAAACTTGGAGGATGGG
ACCCAGAAGGAGCAGTGCGAGTAGCTGGTGCAAGGTTCTCCGTGTTGAAA
GGTCCAATTGCAAGAATGGAGCGAGCGTTAGGTCAATGGCTGCTCGATCT
ACATACAACTCAGCATGGGTATACGGAAGTGTCTGTCCCGCTGCTGGTGA
CAAGGAGCTCTTTGGAAGGCACGGGCCAACTGCCGAAGTTTGAGGAAGAC
CTCTTCAAAACAAACCATCTGGTGGCTAACGAGGATAGTTTCTTAATTCC
GACGGGAGAGGTGCCTTTGACGAATCTTCTCCGAGGCCAGTTGTTGGACA
AGGCTCAGAACTCAGCATGGGTATACGGAAGTGTCTGTCCCGCTGCTGGT
GACAAGGAGCTCTTTGGAAGGCACGGGCCAACTGCCGAAGTTTGAGGAAG
ACCTCTTCAAAACAAACCATCTGGTGGCTAACGAGGATAGTTTCTTAATT
CCGACGGGAGAGGTGCCTTTGACGAATCTTCTCCGAGGCCAGTTGTTGGA
CAAGGCTCAGCTACCACTATCTTTTGTGGCTCTTACACCGTGTTTCAGAG
CGGAGGCAGGGTCGGCCGGACGAGATACCCGCGGATTACTTCGCCAACAT
CAATTTTTAAAGCTACCACTATCTTTTGTGGCTCTTACACCGTGTTTCAG
AGCGGAGGCAGGGTCGGCCGGACGAGATACCCGCGGATTACTTCGCCAAC
ATCAATTTTTAAAGGTAGAACTGGTCAAGGTTACTACGCCAGAGGACAGC
AAAAGCGAGCACGAAGCGCTGACACAAGACGCAGAGGCCGTGTTGAAGGT
AGAACTGGTCAAGGTTACTACGCCAGAGGACAGCAAAAGCGAGCACGAAG
CGCTGACACAAGACGCAGAGGCCGTGTTGAAGGCGTTGAAGCTGCCGTTT
CGGCGAGTAAATTTATGTAGCGGGGATATTGGGTTTGGCGCTCGCTTGTG
TTACGACTTGGAAGTTTGGATGCCTGGACAAAGTGCATACCGGGAAATAT
CGTCATGCAGCAACTGCCAGGACTTTCAGGCCCGTCGCATGGGTCTGCGC
TACCGTGAACCAGTAGAAGGTGAACACGCGTTGAAGCTGCCGTTTCGGCG
AGTAAATTTATGTAGCGGGGATATTGGGTTTGGCGCTCGCTTGTGTTACG
ACTTGGAAGTTTGGATGCCTGGACAAAGTGCATACCGGGAAATATCGTCA
TGCAGCAACTGCCAGGACTTTCAGGCCCGTCGCATGGGTCTGCGCTACCG
TGAACCAGTAGAAGGTGAACACGGCAAGTCACGCAACATTGCCTGCCACA
GTATGAACGGATCAGGTGTAGCAGTGGGTCGAGCACTCGTAGCCATATTA
GAAAATTACTACAACCCCGCGGATGGGTCTGTCGAGGTGCCGGATGTCCT
GCGCCCATACATGGGTGGAACTGAAAGATTAGTTGCCACCTCGTAGGGCA
AGTCACGCAACATTGCCTGCCACAGTATGAACGGATCAGGTGTAGCAGTG
GGTCGAGCACTCGTAGCCATATTAGAAAATTACTACAACCCCGCGGATGG
GTCTGTCGAGGTGCCGGATGTCCTGCGCCCATACATGGGTGGAACTGAAA
GATTAGTTGCCACCTCGTAG
back to top