mRNA_H-paniculata_contig15958.3454.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15958.3454.1
Unique NamemRNA_H-paniculata_contig15958.3454.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 8.770e-56
Identity = 109/308 (35.39%), Postives = 183/308 (59.42%), Query Frame = 1
Query:   16 IMLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTNPAGSVYEQGT--RDYQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYLDA-PNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTKF 930
            ++LT+YVDD+LI G +   + + +  L  +F  T  G+  +ILGI + ++ +  T++  Q HYV +LL+ F     N V TPG G E++TN         T  ++YQ++ G++++L Q TR D+++A  Q ++  +NP  V+M + K +LRYL   P L I Y R   F L  F D+S+G  +P+  RST+G ++FL GG+I + +  Q +TAQS+ EAE+  +S  A++ +Y+S  + EL +K    V I  D+ G L +AG   +  R+ ++A+R   + + + + QI + H  ++ QL+DI TK+
Sbjct:   51 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRT-NVALRCFFIRELVLRGQITLHHRPSEHQLADIATKY 355          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.690e-55
Identity = 111/308 (36.04%), Postives = 184/308 (59.74%), Query Frame = 1
Query:   16 IMLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTN-PAGSVYEQGTRD-YQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYLDA-PNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTKF 930
            ++LT+YVDD+LI G +   + + +  L  +F  T  G+  +ILGI + ++ +  T++  Q HYV +LL+ F     N V TPG G E++TN P   +     +  YQ++ G++++L Q TR D+++A  Q ++  +NP  V+M + K +LRYL   P L I Y R   F L  F D+S+G  +P+  RST+G ++FL GG+I + +  Q +TAQS+ EAE+  +S  A++ +Y+S  + EL +K    V I  D+ G L +AG   +  R+KH+A+R   + + + + QI + H  ++ QL+DI TK+
Sbjct:  378 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKY 683          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.850e-55
Identity = 113/312 (36.22%), Postives = 181/312 (58.01%), Query Frame = 1
Query:    1 SRDNSIMLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTN-PAGSVY-EQGTRDYQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYL-DAPNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTK 927
            S D   +L IYVDD+LI G N   +++ +  LM  F  T  G+  +++GI + ++ +H T++  Q  Y   +L+ +     N V TPG G EL+T  P   +   +  + +QAI G+L++L Q TR D+++A+ Q  R  ANP  VHM + K +LRYL   P+L I Y +   F L+ F D+S+G  +P+  RST+G ++FL GG+I + +  Q + AQ++ EAEL  +S  A++ +Y+S  + E+G+K  R V I  D+ G L +A    + SR+KH+A+R   L +     +I + H  +   L+DI TK
Sbjct:  406 SGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GKFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATK 715          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.040e-54
Identity = 110/308 (35.71%), Postives = 183/308 (59.42%), Query Frame = 1
Query:   16 IMLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTN-PAGSVYEQGTRD-YQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYLDA-PNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTKF 930
            ++LT+YVDD+LI G +   + + +  L  +F  T  G+  +ILGI + ++ +  T++  Q HYV +LL+ F     N V TPG G E++TN P   +     +  YQ++ G++++L Q TR D+++A  Q ++  +NP  V+M + K +LRYL   P L I Y R   F L  F D+S+G  +P+  RST+G ++FL GG+I + +  Q +TAQS+ EAE+  +S  A++ +Y+S  + EL +K    V I  D+ G L +AG   +  R+KH+ +R   + + + + QI + H  ++ QL+DI TK+
Sbjct:  534 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKY 839          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.970e-54
Identity = 108/308 (35.06%), Postives = 182/308 (59.09%), Query Frame = 1
Query:   16 IMLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTN-PAGSVYEQGTRD-YQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYLDA-PNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTKF 930
            ++LT+YVDD+LI G +   + + +  L  +F  T  G+  +ILGI + ++ +  T++  Q HYV + L+ F     N V T G G E++TN P   +     +  YQ++ G++++L Q T+ D+++A  Q ++  +NP  V+M + K +LRYL   P L I Y R   F L  F D+S+G  +P+  RST+G ++FL GG+I + +  Q +TAQS+ EAE+  +S  A++ +Y+S  + EL +K    V I  D+ G L +AG   +  R+KH+A+R   + + + + QI + H  ++ QL+DI TK+
Sbjct:  170 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKY 475          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 8.200e-51
Identity = 105/282 (37.23%), Postives = 167/282 (59.22%), Query Frame = 1
Query:    1 SRDNSIMLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTN-PAGSVY-EQGTRDYQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYL-DAPNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIR 837
            S D   +L IYVDD+LI G N   ++  +  LM  F  T  G+  +++GI + ++ +H T++  Q  Y   +L+ +     N V TPG G EL+T  P   +   +  + +QAI G+L++L Q TR D+++A+ Q  R  ANP  VHM + K +LRYL   P+L I Y +   F L+ F D+S+G  +P+  RST+G ++FL GG+I + +  Q + AQ++ EAEL  +S  A++ +Y+S  + E+G+K  R V I  D+ G L +A    + SR+KH+A+R
Sbjct: 1185 SGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALR 1464          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 182 bits (463), Expect = 1.600e-50
Identity = 108/311 (34.73%), Postives = 177/311 (56.91%), Query Frame = 1
Query:   10 NSIMLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTP-GIGKELTTNPAGSVYEQGTRDYQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYLDAP-NLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTKFCS 936
            N +++ ++VDD+LI         K+R+ L ++F     GDA  ILGI IT++R   T+S  Q  Y+ ++L+ F    CN  +TP  +  + +   +G+  +     Y+  IG+L+F  Q TR DI F++   +R+   P + H  + KRI+RYL    +  +TY   S  ++ G+ DA YG  D +  +STSG ++   G  + + S  QK+ AQS+TEAE I++S   K+ I+L  +  E+  K +   +I CDNKG + LA   N+  ++KH+ I+   +HD I   ++++ HVST+K L+D+LTK  S
Sbjct:  132 NIMIVMVWVDDVLIACNQKCEEEKLRAALESRFKMKYLGDAKVILGIQITRDRMKKTVSIDQRRYIETVLERFGMEDCNPANTPMDVNTKYSRKMSGNDEKNEIFPYREAIGSLLFAAQVTRPDIIFSVILLSRYCEEPKWAHWIATKRIMRYLKGTIDHKLTYG-PSRTDIIGYSDADYG-GDIDDRKSTSGYVFVKNGTALCWQSKKQKVVAQSTTEAEFISLSFATKEAIWLHALCNEITGKPNLPYQIYCDNKGAIDLARNNNHSEQTKHVDIKFKLVHDEIVNNRMLLTHVSTEKMLADVLTKSLS 440          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 2.280e-49
Identity = 99/280 (35.36%), Postives = 161/280 (57.50%), Query Frame = 1
Query:   97 MAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTN-PAGSVY-EQGTRDYQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYL-DAPNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTK 927
            M  F  T  G+  +++GI + ++ +H T++  Q  Y   +L+ +     N V TPG G EL+T  P   +   +  + +Q I G+L++L Q TR D+++A+ Q  R  ANP  VHM + K +LRYL   P+L I Y +   F L+ F D+S+G  +P+  RST+G ++FL GG+I + +  Q + AQ++ EAEL  +S  A++ +Y+S  + E+G+K  R V I  D+ G L +A    + SR+KH+A+R   L +     +I + H  +   L+DI TK
Sbjct:    1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATK 278          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.570e-47
Identity = 109/295 (36.95%), Postives = 172/295 (58.31%), Query Frame = 1
Query:   55 GPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTNPAGSVY--EQGTRDYQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYL-DAPNLTITYSRDSNFELTGFCDASY-GTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTK 927
            G   + +  ++  L  KF  T  G A  +LG+ I+Q      +S  QH YV+++L  +    C    TPG G E+   P  ++Y  E+  + YQ I+G+L+FLT +TR +I +A+    R M  PT  HM   KR+LRYL   P++ + + R   ++L  +CDAS+ G+S+  + RS++G ++ L GGV+  +S+ QK+TAQSS  AE+I M+T A++ IYL G+L ELG+     + I  D+ G +  AG   +  RSK ++ R   L   +N+  IV+  V +++QL+DILTK
Sbjct:  395 GKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVS--QHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRR-GQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGN-IPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTK 685          
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 4.050e-44
Identity = 99/305 (32.46%), Postives = 169/305 (55.41%), Query Frame = 1
Query:   16 IMLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQERKHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTNPAGSVYEQGTRDYQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYLDA-PNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHFSSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCDNKGTLLLAGQGNYGSRSKHLAIRSAGLHD*INQRQIVIDHVSTKKQLSDILTK 927
            ++LT+YVDD+LI G +   + + +  L  +F  T  G+  +ILGI + ++ +  T++  Q HYV +LL+ F                   NP   +     + YQ++ G+++ L Q TR D+++A  Q ++  +NP  V+M + K  +RYL   P L I Y R   F L  F D+S+G  +P+  RST+G ++FL GG+I + +  Q +TAQS+ EAE+  +S  A++ +Y+S  + EL +K    V I  D+ G L +AG   +  R+K +A+R   + + +   QI + H  ++ QL+D +T+
Sbjct:  153 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQ--------------EANPDQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRELVLLGQITLHHRPSEHQLADXMTE 441          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15958.3454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUJ3_9PHAE8.770e-5635.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.690e-5536.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE1.850e-5536.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE3.040e-5435.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE3.970e-5435.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE8.200e-5137.23Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A4Q3EC79_9SPHI1.600e-5034.73Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]
A0A6H5KC04_9PHAE2.280e-4935.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J897_9PHAE1.570e-4736.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK0_9PHAE4.050e-4432.46Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15958contigH-paniculata_contig15958:2465..4095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score154.5
Seed ortholog evalue7.5e-35
Seed eggNOG ortholog35725.K2R9C2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons2
Model size948
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15958.3454.1prot_H-paniculata_contig15958.3454.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15958 2555..4077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.7255673-UTR-H-paniculata_contig15958:2464..25541622929274.7255673-UTR-H-paniculata_contig15958:2464..2554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15958 2465..2554 -
1691480796.4942892-UTR-H-paniculata_contig15958:2464..25541691480796.4942892-UTR-H-paniculata_contig15958:2464..2554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15958 2465..2554 -
1622929274.7803628-UTR-H-paniculata_contig15958:4077..40951622929274.7803628-UTR-H-paniculata_contig15958:4077..4095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15958 4078..4095 -
1691480796.5182393-UTR-H-paniculata_contig15958:4077..40951691480796.5182393-UTR-H-paniculata_contig15958:4077..4095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15958 4078..4095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.7360811-CDS-H-paniculata_contig15958:2554..31081622929274.7360811-CDS-H-paniculata_contig15958:2554..3108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15958 2555..3108 -
1691480796.5033739-CDS-H-paniculata_contig15958:2554..31081691480796.5033739-CDS-H-paniculata_contig15958:2554..3108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15958 2555..3108 -
1622929274.768572-CDS-H-paniculata_contig15958:3791..40771622929274.768572-CDS-H-paniculata_contig15958:3791..4077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15958 3792..4077 -
1691480796.510698-CDS-H-paniculata_contig15958:3791..40771691480796.510698-CDS-H-paniculata_contig15958:3791..4077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15958 3792..4077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15958.3454.1

>prot_H-paniculata_contig15958.3454.1 ID=prot_H-paniculata_contig15958.3454.1|Name=mRNA_H-paniculata_contig15958.3454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MLTIYVDDLLIIGPNNTALAKIRSTLMAKFTKTGFGDATQILGISITQER
KHDTISEIQHHYVVSLLKIFARNVCNTVHTPGIGKELTTNPAGSVYEQGT
RDYQAIIGNLIFLTQSTRMDIAFAISQAARFMANPTFVHMRSVKRILRYL
DAPNLTITYSRDSNFELTGFCDASYGTSDPEKARSTSGSMYFLFGGVIHF
SSSPQKITAQSSTEAELITMSTCAKQGIYLSGILGELGWKNSRRVRILCD
NKGTLLLAGQGNYGSRSKHLAIRSAGLHD*
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mRNA from alignment at H-paniculata_contig15958:2465..4095-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15958.3454.1 ID=mRNA_H-paniculata_contig15958.3454.1|Name=mRNA_H-paniculata_contig15958.3454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1631bp|location=Sequence derived from alignment at H-paniculata_contig15958:2465..4095- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAGGGACAACTCTATCATGCTTACGATATACGTCGACGATCTGCTCAT CATTGGGCCCAACAATACGGCCTTAGCCAAAATCCGTTCTACACTCATGG CCAAATTCACCAAGACTGGCTTTGGAGACGCGACGCAAATTCTAGGGATC AGCATCACTCAGGAGAGAAAGCACGACACCATCAGCGAAATTCAGCACCA CTACGTGGTATCGCTACTGAAGATATTCGCCAGGAACGTTTGCAACACAG TTCACACACCAGGCATAGGCAAGGAACTGACGACAAACCCTGCAGGAAGT GTCTGTTAAAGTATGGCTTCGTAGCCAGAGTCAACGACAGTAGTGCGTAA GCGTTGTAGCGTTAAGTGAAGTGGAAACACTTGATGTTAGGAGATAGGAT TTTACCAACCTATCTAGACAGTGCTCAGTAGCACGGTATTGCTGCAGCCA TCACAGCAGTAGAACATGTTCGAAGTACAGGTATCGATATCCGCACTCTG GACCTTGTAACAATATTCGGTCACAACAAAAAAGCGGACGAGCTAGTGCC GGTTCGACTGAGAAATTTCCTGCAACGTTCTTTCACAGTATCGGGAGATT GTGCCGGGAGATAGCGAGGGTTTGCGGGTGTTCCTTCCTTCCGCTTCCAA GCAATTATCCGGGTGCTTGTCCTGGATGAATTGAGTGTGGCTGACCCACT TCAGTCACTCTCTCACACACAGCAGCCACTATGACTTCAGCAGCCAGCGA GTCTGTGGTTCGGTCTTCTTTCTTTGTCTAAATCCGAAATAATAAAAGGC ATGCAGTAGTTCAACATCTTCGATCTCAAGTGGTGCACACTGCATCCCAG CTTCCCAGCTGTCCCTGCGTTTGGCTACCTCGCGGAGCCTACGGCAGCCT CCGTCGCCACTTACCGGTGCTTTACAGCCGATACACCAATTGATTATGGG CTTCGATAGCTTATGAACACCAACAGTGTCTTACTAGACGAACAAGGTAC AAGAGATTATCAGGCCATTATCGGGAATCTCATCTTCTTGACTCAGTCTA CGCGTATGGACATAGCGTTCGCTATCTCACAAGCGGCGCGTTTCATGGCC AATCCTACCTTCGTTCACATGCGAAGCGTAAAACGCATCTTGCGCTACCT AGACGCACCAAACCTAACCATTACCTACAGTCGTGATTCCAACTTCGAGC TAACCGGCTTCTGCGACGCCTCCTACGGTACTAGCGACCCCGAGAAAGCA AGGTCAACGTCAGGGAGCATGTACTTCCTCTTCGGTGGAGTTATTCATTT CAGTTCAAGCCCTCAAAAAATTACGGCTCAGTCATCCACCGAGGCGGAAC TAATCACCATGAGCACTTGTGCTAAACAAGGAATTTACCTATCCGGCATC CTTGGAGAGCTTGGATGGAAGAACTCCCGTAGAGTCCGTATCCTCTGCGA CAACAAGGGAACACTACTTCTTGCGGGCCAAGGCAACTATGGAAGCAGGT CCAAACACCTGGCCATTCGTTCCGCCGGGCTCCACGATTGAATTAACCAG CGGCAGATAGTCATCGACCATGTCTCCACCAAGAAACAGCTCAGCGACAT CTTGACCAAGTTCTGCTCAGGACCCATCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig15958:2465..4095-

>mRNA_H-paniculata_contig15958.3454.1 ID=mRNA_H-paniculata_contig15958.3454.1|Name=mRNA_H-paniculata_contig15958.3454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig15958:2465..4095- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTACGATATACGTCGACGATCTGCTCATCATTGGGCCCAACAATAC
GGCCTTAGCCAAAATCCGTTCTACACTCATGGCCAAATTCACCAAGACTG
GCTTTGGAGACGCGACGCAAATTCTAGGGATCAGCATCACTCAGGAGAGA
AAGCACGACACCATCAGCGAAATTCAGCACCACTACGTGGTATCGCTACT
GAAGATATTCGCCAGGAACGTTTGCAACACAGTTCACACACCAGGCATAG
GCAAGGAACTGACGACAAACCCTGCAGGAAGTGTCTATGCTTACGATATA
CGTCGACGATCTGCTCATCATTGGGCCCAACAATACGGCCTTAGCCAAAA
TCCGTTCTACACTCATGGCCAAATTCACCAAGACTGGCTTTGGAGACGCG
ACGCAAATTCTAGGGATCAGCATCACTCAGGAGAGAAAGCACGACACCAT
CAGCGAAATTCAGCACCACTACGTGGTATCGCTACTGAAGATATTCGCCA
GGAACGTTTGCAACACAGTTCACACACCAGGCATAGGCAAGGAACTGACG
ACAAACCCTGCAGGAAGTGTCTACGAACAAGGTACAAGAGATTATCAGGC
CATTATCGGGAATCTCATCTTCTTGACTCAGTCTACGCGTATGGACATAG
CGTTCGCTATCTCACAAGCGGCGCGTTTCATGGCCAATCCTACCTTCGTT
CACATGCGAAGCGTAAAACGCATCTTGCGCTACCTAGACGCACCAAACCT
AACCATTACCTACAGTCGTGATTCCAACTTCGAGCTAACCGGCTTCTGCG
ACGCCTCCTACGGTACTAGCGACCCCGAGAAAGCAAGGTCAACGTCAGGG
AGCATGTACTTCCTCTTCGGTGGAGTTATTCATTTCAGTTCAAGCCCTCA
AAAAATTACGGCTCAGTCATCCACCGAGGCGGAACTAATCACCATGAGCA
CTTGTGCTAAACAAGGAATTTACCTATCCGGCATCCTTGGAGAGCTTGGA
TGGAAGAACTCCCGTAGAGTCCGTATCCTCTGCGACAACAAGGGAACACT
ACTTCTTGCGGGCCAAGGCAACTATGGAAGCAGGTCCAAACACCTGGCCA
TTCGTTCCGCCGGGCTCCACGATTGAACGAACAAGGTACAAGAGATTATC
AGGCCATTATCGGGAATCTCATCTTCTTGACTCAGTCTACGCGTATGGAC
ATAGCGTTCGCTATCTCACAAGCGGCGCGTTTCATGGCCAATCCTACCTT
CGTTCACATGCGAAGCGTAAAACGCATCTTGCGCTACCTAGACGCACCAA
ACCTAACCATTACCTACAGTCGTGATTCCAACTTCGAGCTAACCGGCTTC
TGCGACGCCTCCTACGGTACTAGCGACCCCGAGAAAGCAAGGTCAACGTC
AGGGAGCATGTACTTCCTCTTCGGTGGAGTTATTCATTTCAGTTCAAGCC
CTCAAAAAATTACGGCTCAGTCATCCACCGAGGCGGAACTAATCACCATG
AGCACTTGTGCTAAACAAGGAATTTACCTATCCGGCATCCTTGGAGAGCT
TGGATGGAAGAACTCCCGTAGAGTCCGTATCCTCTGCGACAACAAGGGAA
CACTACTTCTTGCGGGCCAAGGCAACTATGGAAGCAGGTCCAAACACCTG
GCCATTCGTTCCGCCGGGCTCCACGATTGA
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