mRNA_H-paniculata_contig15956.3453.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15956.3453.1
Unique NamemRNA_H-paniculata_contig15956.3453.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15956.3453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15956contigH-paniculata_contig15956:2515..4164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size443
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15956.3453.1prot_H-paniculata_contig15956.3453.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15956 2515..4164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.6545854-CDS-H-paniculata_contig15956:2514..25891622929274.6545854-CDS-H-paniculata_contig15956:2514..2589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15956 2515..2589 +
1691480796.4637544-CDS-H-paniculata_contig15956:2514..25891691480796.4637544-CDS-H-paniculata_contig15956:2514..2589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15956 2515..2589 +
1622929274.6711915-CDS-H-paniculata_contig15956:3370..35381622929274.6711915-CDS-H-paniculata_contig15956:3370..3538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15956 3371..3538 +
1691480796.4733527-CDS-H-paniculata_contig15956:3370..35381691480796.4733527-CDS-H-paniculata_contig15956:3370..3538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15956 3371..3538 +
1622929274.68376-CDS-H-paniculata_contig15956:3966..41641622929274.68376-CDS-H-paniculata_contig15956:3966..4164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15956 3967..4164 +
1691480796.482575-CDS-H-paniculata_contig15956:3966..41641691480796.482575-CDS-H-paniculata_contig15956:3966..4164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15956 3967..4164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15956.3453.1

>prot_H-paniculata_contig15956.3453.1 ID=prot_H-paniculata_contig15956.3453.1|Name=mRNA_H-paniculata_contig15956.3453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
ASSYGLVPAATSRALMVSLLMSLSEEYSFLKWLILVWSSLEVFLGVRGQS
CKTTIKECWTPLFLRGLLPSFVGLIGSSYSQAVFLLLVSALPFYRGNIRT
TWVMAPGTMAVDVCMNVLFALLVLFFIVFMTSELLDYDGYSDVISNP
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mRNA from alignment at H-paniculata_contig15956:2515..4164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15956.3453.1 ID=mRNA_H-paniculata_contig15956.3453.1|Name=mRNA_H-paniculata_contig15956.3453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig15956:2515..4164+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGCAGCTATGGCCTTGTCCCTGCCGCGACCTCTAGAGCTCTGATGGT
CAGCTTGTTGATGTCGCTCTCGGAGGTACGGGGAGCTCAAAATAGCATAC
GGATGACGGTTGACCGCCCCCTTCATAGGTCAACACGATGACATTTATCG
TCTGATGAGCAGATCAGAGACAGGAATTGTGCCGCGGCATGTAATATCTG
ACAACTTAGAAATTCCCTGTTATTTTCGCAGGATGACATATACCTTCGGA
GCTTACCTGTACATAGCCGAATCCCGATAGAGGAGAGTGTGGTTAAGTTT
TGGTTACCTTTCCCCTGCCGAGGGTTGCGAATACCCCGTTGCCGCGTTGT
TACATACCACTACAAAGAAGGTAACCAACCCCCCTCTCTCTCAGTCACAG
GGTAACAACGCGAGATCGACCTATCGCGGAGACGTTGTAACCTCGCCGAT
AGGGTAGATCGCAGAGATGTCGGTCTGTTCCATCTCAACCATATTTCTTA
CCTGTCCCCTAGATTTGAGAATGATGTCGTACGGAGGAGAAAACGTGCGA
AGCATTGTTTTGTTTCCCGTCGGCCATGCTACGCGTGCTCGAGAGCACTT
TATCCATAAGAGCAATGAATGACCCAGACATGCCTCATCTCTAGTTATAT
CCTATTTTGCCAAGAACGGGTCCAAAAGGTTTGTACTCTTCTCTCCAGAA
AACGCTGCCTTTGCAGTTCATTTTTGGGTCGGGTTGGGAATTCAACCAAT
CTGCGGCGGTACGATATTTGGAAAATGCGAAGCCAATCTATTCCCCTCAG
GCTGTACATAAACTGTGTGAACACATCAAGTCGTTGACCCTGCTTGCTCT
GCGCAGGAGTACTCATTTCTCAAGTGGCTCATTTTGGTTTGGTCGAGCCT
GGAAGTATTCCTTGGAGTGCGCGGGCAGAGTTGCAAGACCACGATAAAGG
AGTGCTGGACTCCTCTATTCTTAAGGGGGCTTCTTCCGTCCTTCGTTGGC
CTCATTGGCAGCTCATACAGCCAGGTGAAGCACTCGACCCGAAGGGATGC
CGCTGTAAAGAATGGTCTAGAGTAAACGCCAGTCCGTTGACAGCAAGCAT
GCAAAATGCCGTTGGAAGAGGATATTGTGTACTTTGGTTGAAGTGACAGT
AGCCTGTTTACTTTTCCGCATGACGATCGATACGGTGGGCTTCTATTTTG
CTAGAGAGCGTTTCCGGCTAAGGTGGTCGGTCCTTTTTTCCTGAAAGGAG
TAATAGTACTCGCCGACAAATACACCCCCTGTCCTGAAATGATCATGTTT
CGGCTTAAAGGTACCTTTCACCCCGTCCCCCCCCCAAAATCATCAACCTC
ATACGTTCCCTTCACACGTCATGTTTGGCCTCGGCACCATGCTTGCTTGC
TGTCATTTCCCGTGCCCCTCATCGCTTCTACCTGTGGACTGCTTCCGCGA
AGGCGGTGTTCCTGCTTCTGGTGTCGGCGTTGCCGTTTTACCGAGGGAAC
ATCCGGACCACGTGGGTGATGGCGCCTGGTACCATGGCTGTGGATGTGTG
CATGAACGTGCTTTTCGCACTCCTCGTTCTATTCTTCATTGTGTTCATGA
CTTCGGAGCTTCTGGACTACGACGGGTACAGCGACGTCATCTCCAATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig15956:2515..4164+

>mRNA_H-paniculata_contig15956.3453.1 ID=mRNA_H-paniculata_contig15956.3453.1|Name=mRNA_H-paniculata_contig15956.3453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig15956:2515..4164+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGCAGCTATGGCCTTGTCCCTGCCGCGACCTCTAGAGCTCTGATGGT
CAGCTTGTTGATGTCGCTCTCGGAGGCGAGCAGCTATGGCCTTGTCCCTG
CCGCGACCTCTAGAGCTCTGATGGTCAGCTTGTTGATGTCGCTCTCGGAG
GAGTACTCATTTCTCAAGTGGCTCATTTTGGTTTGGTCGAGCCTGGAAGT
ATTCCTTGGAGTGCGCGGGCAGAGTTGCAAGACCACGATAAAGGAGTGCT
GGACTCCTCTATTCTTAAGGGGGCTTCTTCCGTCCTTCGTTGGCCTCATT
GGCAGCTCATACAGCCAGGAGTACTCATTTCTCAAGTGGCTCATTTTGGT
TTGGTCGAGCCTGGAAGTATTCCTTGGAGTGCGCGGGCAGAGTTGCAAGA
CCACGATAAAGGAGTGCTGGACTCCTCTATTCTTAAGGGGGCTTCTTCCG
TCCTTCGTTGGCCTCATTGGCAGCTCATACAGCCAGGCGGTGTTCCTGCT
TCTGGTGTCGGCGTTGCCGTTTTACCGAGGGAACATCCGGACCACGTGGG
TGATGGCGCCTGGTACCATGGCTGTGGATGTGTGCATGAACGTGCTTTTC
GCACTCCTCGTTCTATTCTTCATTGTGTTCATGACTTCGGAGCTTCTGGA
CTACGACGGGTACAGCGACGTCATCTCCAATCCCGCGGTGTTCCTGCTTC
TGGTGTCGGCGTTGCCGTTTTACCGAGGGAACATCCGGACCACGTGGGTG
ATGGCGCCTGGTACCATGGCTGTGGATGTGTGCATGAACGTGCTTTTCGC
ACTCCTCGTTCTATTCTTCATTGTGTTCATGACTTCGGAGCTTCTGGACT
ACGACGGGTACAGCGACGTCATCTCCAATCCC
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