prot_H-paniculata_contig15953.3452.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig15953.3452.1
Unique Nameprot_H-paniculata_contig15953.3452.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length194
Homology
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 123 bits (308), Expect = 5.170e-29
Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = 0
Query:   14 LLVALYVDDLVIAG-RREKVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPE--SANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD 193
            L + LYVDD++IA   ++++ E K      F MKDLG+  ++LG+E RRDR  G +T+SQ  YI + LKR+    C  + TPL    K+S+ E   + +  E  +   Y   VGSLMY    TRPD A+AV    R M +P R  + + K I RYL    ++G++F     + +G+ G+VD D
Sbjct:  958 LYLVLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRYMHNPGRMHWKAVKCILRYLKGTSNIGLSFEKSRASPNGIVGYVDSD 1140          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A5B7BYT4_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BYT4_DAVIN)

HSP 1 Score: 119 bits (299), Expect = 3.260e-28
Identity = 71/190 (37.37%), Postives = 105/190 (55.26%), Query Frame = 0
Query:    8 DGGETSLLVALYVDDLVIAGRRE-KVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFD-VCPGVPTPLEGKVKVSAPESANKRSEPKNSTE--YRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD 193
            DG    LL  LYVDD++IA + + ++   K      F MKDLG   ++LG+E +RDR+ GT+ ++Q  Y++  L+R+G D     V TPL    K+SA  S     E K+ T+  Y   VG+LMY    TRPD ++AV    R M +P +G + + K I RY+    D+G+ F    + G  + G+VD D
Sbjct:  171 DGSFIYLL--LYVDDMLIASKSKVEIDRLKVQLNSEFDMKDLGEAKKILGMEIKRDRVKGTVFLTQTQYLKNVLQRFGMDGTAKSVNTPLAAHFKLSALMSPRTEEERKHMTQIPYANAVGALMYAMVCTRPDISHAVSMVSRYMHNPGKGHWQAVKWILRYIQGTVDVGLKFQKDDSTGQHVIGYVDSD 358          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A438HB19_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HB19_VITVI)

HSP 1 Score: 119 bits (297), Expect = 1.450e-27
Identity = 68/186 (36.56%), Postives = 102/186 (54.84%), Query Frame = 0
Query:   11 ETSLLVALYVDDLVIAGRREKVYE-FKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPK--NSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD 193
            ++ + + LYVDD+++A + ++  E  K   +  F MKDLGS  R+LG+E  RDR    + +SQ SYI + L R+  +    + TPL    ++S  ++     E +      Y  MVGS+MY    +RPD AYAV    R M  P +  + + K  F+YL+    LG+ +GG S  G  L+GFVDVD
Sbjct:   22 DSMVYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTMSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKSHWQAVKWFFQYLAGTRSLGLVYGGNSQLGTQLQGFVDVD 207          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A835JQG2_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835JQG2_9ROSI)

HSP 1 Score: 113 bits (283), Expect = 2.810e-26
Identity = 67/183 (36.61%), Postives = 98/183 (53.55%), Query Frame = 0
Query:   14 LLVALYVDDLVIAGRR-EKVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEP--KNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD 193
            +++ LYVDD++IAG    ++ + K    + F MKDLG+  ++LG+   RDR+ GT+T+SQ  YI+  L R+  D    V TPL    K+S  +S     E    N   Y   VGSLMY    TRPD ++AV    R M +P +  + + K I RYL    +  + F GK      ++G+VD D
Sbjct:  102 VILLLYVDDMLIAGANIVEINKLKKLMSEYFEMKDLGAAKQILGMRIARDRIKGTLTLSQAEYIKRILSRFSMDNAKPVGTPLGNHFKLSKNQSPKSEEERYYMNKVPYASAVGSLMYAMICTRPDISHAVGVVSRYMSNPRKQHWEAVKWILRYLKGSTETCLCFSGKDLV---VQGYVDAD 281          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A225WDK2_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDK2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.470e-26
Identity = 62/189 (32.80%), Postives = 105/189 (55.56%), Query Frame = 0
Query:    9 GGETSLLVALYVDDLV-IAGRREKVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKV---KVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD 193
            GG    ++ +YVDDL+ IA    ++ E K      F+ KD+G++  +LG+  +R+R   T++I Q +Y +  ++++         TP +  V   K + P++ ++R++ KN  +YRG+VGSLMY  TG+RPD A+ +    + + DP    +++ KRI RY+      G+   G+S  G  L  FVD D
Sbjct:  227 GGSGVAIIGIYVDDLLLIADTASRIQEMKSMLSAGFKCKDMGAVHHILGLRVKRNRALKTLSIDQTAYAKGVIEKFNLMQLNPCKTPCDPNVILSKENCPKNEDERAQMKNK-DYRGLVGSLMYLMTGSRPDIAFGIQCVSKYLNDPGLAHWNAAKRILRYVKGTIGYGLVIDGRSRTGKQLTAFVDSD 414          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 111 bits (278), Expect = 5.640e-26
Identity = 65/178 (36.52%), Postives = 102/178 (57.30%), Query Frame = 0
Query:    2 LILSRDDGGETSLLVALYVDDLVIAGRREKVY-EFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGG 178
            L + RD G E  L+VA+YVDDLVI+G  + V  EFK +    + + D G L+++LGI+  RD+ N    +SQ S+I++AL ++G D  P   TPL+  V ++   +   ++E  ++  YR MVG+L + +  TRP+ A+ VH+  R   +P    F + +R FRYL       +  GG
Sbjct:   21 LYIHRDGGNE--LMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTP--TPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG 194          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A438FL78_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FL78_VITVI)

HSP 1 Score: 112 bits (279), Expect = 1.300e-25
Identity = 66/186 (35.48%), Postives = 100/186 (53.76%), Query Frame = 0
Query:   11 ETSLLVALYVDDLVIAGRREKVYEF-KHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPK--NSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD 193
            +  + + LYVDD+++A + ++  E  K   +  F +KDLGS  R+LG+E  RDR      +SQ SYI + L R+  +    + TPL    K+S  ++     E +      Y  MVGS+MY    +RPD AYAV    R M    +  + + K +F+YL++   LG+ +GG S  G  L+GFVD D
Sbjct:  234 DNMVYLLLYVDDMLVACKEKRHLELVKEMFKAEFEIKDLGSAKRILGMEIERDRSKRVFRLSQKSYISKILSRFEMNNVKTMSTPLGQHFKLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCLRKPHWQAVKWLFQYLASTRSLGLVYGGNSQLGTQLQGFVDAD 419          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A438KP21_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KP21_VITVI)

HSP 1 Score: 113 bits (282), Expect = 1.490e-25
Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = 0
Query:   18 LYVDDLVIAGRREKVYE-FKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPK--NSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD 193
            LYVDD+++A + ++  E  K   +  F MKDLGS  R+LG E  RDR    + +SQ SYI + L R+  +    V TPL    ++S  ++     E +      Y  MVGS+MY    ++P+ AYAV    R +  P +  + + K  F+YL+    LG+ +GG S  G  L+GFVDVD
Sbjct:  367 LYVDDMLVACKEKRHLEQVKEMLKAKFEMKDLGSTKRILGTEIERDRSKRVLRLSQKSYISKVLSRFEMNNIKTVSTPLGQHFRLSITQAPETHEEKRFMEMIPYASMVGSVMYTMVCSQPNLAYAVSMISRYINCPGKSHWQAVKWFFQYLAGTRSLGLVYGGNSQLGTQLQGFVDVD 545          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 112 bits (280), Expect = 2.940e-25
Identity = 65/182 (35.71%), Postives = 97/182 (53.30%), Query Frame = 0
Query:   16 VALYVDDLVIAGRREK-VYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPES--ANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGH-GLEGFVDVD 193
            V LYVDD++IA +  K + E K   +  F+MK+LG +  +LG+E   DR   T+ I Q  YI +   R+       V  P E  +K++  +S   N   E   +  YR ++G L+Y +T TRPD AY V Q  R +E+P +  + +  R+ RYL T  + GI + G  NNG   +E + D D
Sbjct: 1028 VCLYVDDMIIAAKTNKEIDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAEREDMRNKPYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNG--NNGKVAMEAYTDAD 1207          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 107 bits (267), Expect = 4.880e-25
Identity = 61/166 (36.75%), Postives = 99/166 (59.64%), Query Frame = 0
Query:    2 LILSRDDGGETSLLVALYVDDLVIAGRREKVY-EFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYL 166
            L + RD G E  L+VA+YVDDLVI+G  + +  EFK +    + + D G L+++LGI+  RD+ N    +SQ S+I++AL ++G D  P   TP++  V ++   +   ++E  ++  YR MVG+L + +  TRP+ A+ VH+  R   +P    F + +R FRYL
Sbjct:  107 LYIHRDGGNE--LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTP--TPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U1MW82_ARTAN5.170e-2938.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A5B7BYT4_DAVIN3.260e-2837.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438HB19_VITVI1.450e-2736.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A835JQG2_9ROSI2.810e-2636.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A225WDK2_9STRA3.470e-2632.80Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A7S4DD78_HETAK5.640e-2636.52Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A438FL78_VITVI1.300e-2535.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A438KP21_VITVI1.490e-2536.87Retrovirus-related Pol polyprotein from transposon... [more]
H3H572_PHYRM2.940e-2535.71Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A7S3Y6S2_HETAK4.880e-2536.75Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 10..95
e-value: 2.7E-15
score: 56.7
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 14..176
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 14..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15953contigH-paniculata_contig15953:1663..2310 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15953.3452.1mRNA_H-paniculata_contig15953.3452.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig15953 1270..2522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig15953.3452.1 ID=prot_H-paniculata_contig15953.3452.1|Name=mRNA_H-paniculata_contig15953.3452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MLILSRDDGGETSLLVALYVDDLVIAGRREKVYEFKHNKRQCFRMKDLGS
LSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVK
VSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMED
PCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like