mRNA_H-paniculata_contig15953.3452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15953.3452.1
Unique NamemRNA_H-paniculata_contig15953.3452.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 202 bits (513), Expect = 4.490e-58
Identity = 126/315 (40.00%), Postives = 172/315 (54.60%), Query Frame = 3
Query:  240 GETSLLVALYVDDLVIAGRREKVYE-FKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITF--GGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTK 1175
            G  SL+++LYVDDL+     E + + FK + ++ F M DLG +   LG+E  +D     I ISQ  Y  E LK+YG   C  V  P+    K++    A +  +P   T Y+ +VGSL Y  T TRPD  Y+V+   R ME+P      + K I RY+      GI +  GG+      L G+VD D A   +DRK T+G+ F   G A SW  +KQ +VT S+TE EYVA      + + + ++L  IG G    T LF DN SAI LSK    H R+KHI VR+H +RE   EG++  +Y  T +QLADI TK
Sbjct:   20 GGNSLIISLYVDDLIYTSNSESMLDSFKKSMQEEFSMTDLGKMKYCLGVEVIQDEAG--IFISQRKYALETLKKYGMQDCNAVRNPMVPGNKLTK-RGAGEEVDP---TAYKQLVGSLRY-LTATRPDLIYSVNVVSRYMENPREEHMMAVKHIMRYVKGTAGFGIQYLCGGEEK----LVGYVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTK 323          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 202 bits (513), Expect = 1.310e-57
Identity = 116/324 (35.80%), Postives = 187/324 (57.72%), Query Frame = 3
Query:  219 ILSRDDGGETSLLVALYVDDLVIAGRR-EKVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTKELSK 1187
            I  +++ G+   +VA++VDD+++AG+  EK+ + K +  + F++KD+G L  +LG++  ++  +G + I Q +Y    +K+YG + C  V TP++   K+    SA + SE  N  EY+  VGSL+Y S+ TRPD  +AV+   +   +     +++ KRIFRYL    + G+ +   +N      GF D D A  + DRK T+GY F++NG A SW  +KQ  V  S+ E EYVA   A +E + +  LL  +        T++EDN+SAI +SK    H R+KHI +++H +R+   +  L + Y  TG  LAD+FTK + K
Sbjct:   52 IYVKEEDGDI-FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLV---SAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPD--CVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPK 367          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A0V0T740_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0T740_9BILA)

HSP 1 Score: 207 bits (528), Expect = 1.260e-55
Identity = 127/320 (39.69%), Postives = 179/320 (55.94%), Query Frame = 3
Query:  240 GETSLLVALYVDDLVIAGRRE-KVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSA---PESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTKELSK 1187
            G    + A+YVDD++IA  +  ++ E K    + F MKD+G +   LGIE +++  NG I +SQ  YI + L+R+       V TP++   K+SA   P +  +++E +N T YR +VGSLMY S  TRPD A+AV    +  E+     +++ KR+ RYL      G+ F     N   L GF D D     +DR+  TGY FK    A SW  RKQ  V  SSTE EY+A  EA KE+IHL  ++G I   C+ S  L  DN+SA+ L++    H RTKHI +R+H IRE      + L+Y+ TG  +AD+ TK L K
Sbjct: 1198 GRELTIAAIYVDDVIIASNKNARLNELKKALAKSFEMKDMGPIHYCLGIEIKQN-ANGDIEMSQRKYIMDILERFRMMDSKTVETPIDASNKLSAEMCPRTETEKAEMQN-TPYRSLVGSLMYLSVSTRPDIAFAVSLLSQFNENYGSQHWTAAKRVLRYLKKTASYGLRF---QRNSGALMGFSDADWGGNSDDRRSYTGYVFKFGNAAISWESRKQRTVALSSTEAEYMALSEACKEVIHLKQMIGEITGLCK-SVVLQSDNQSALKLARNPVFHARTKHIDIRYHFIREAAERKDVELRYLPTGQMVADVLTKGLFK 1511          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A0V1NJF3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NJF3_9BILA)

HSP 1 Score: 206 bits (525), Expect = 1.440e-55
Identity = 127/320 (39.69%), Postives = 178/320 (55.62%), Query Frame = 3
Query:  240 GETSLLVALYVDDLVIAGRRE-KVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSA---PESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTKELSK 1187
            G    + A+YVDD++IA     ++ E K    + F MKD+G +   LGIE +++  NG I +SQ  YI + L+R+       V TP++   K+SA   P++  +++E +N T YR +VGSLMY S  TRPD A+AV    +  E+     +++ KR+ RYL      G+ F     N   L GF D D     +DR+  TGY FK    A SW  RKQ  V  SSTE EY+A  EA KE IHL  ++G I   C+ S  L  DN+SA+ L++    H RTKHI +R+H IRE      + L+Y+ TG  +AD+ TK L K
Sbjct:  606 GRELTIAAIYVDDVIIASNNNARLNELKKALAKSFEMKDMGPIHYCLGIEIKQN-ANGDIEMSQRKYIMDILERFRMMDSKTVETPIDASNKLSAEMCPKTETEKAEMQN-TPYRSLVGSLMYLSVSTRPDIAFAVSLLSQFNENYGSQHWTAAKRVLRYLKKTASYGLRF---QRNSGALMGFSDADWGGNSDDRRSYTGYVFKFGNAAISWESRKQRTVALSSTEAEYMALSEACKEAIHLKQMIGEITGLCK-SVVLQSDNQSALKLARNPVFHARTKHIDIRYHFIREAAERKDVELRYLPTGQMVADVLTKGLFK 919          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A835JQG2_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835JQG2_9ROSI)

HSP 1 Score: 196 bits (497), Expect = 8.490e-55
Identity = 118/314 (37.58%), Postives = 172/314 (54.78%), Query Frame = 3
Query:  252 LLVALYVDDLVIAGRR-EKVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEP--KNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTKELS 1184
            +++ LYVDD++IAG    ++ + K    + F MKDLG+  ++LG+   RDR+ GT+T+SQ  YI+  L R+  D    V TPL    K+S  +S     E    N   Y   VGSLMY    TRPD ++AV    R M +P +  + + K I RYL    +  + F GK      ++G+VD D A  ++ RK TTG+ +   G A SW    Q  V+ S+TE EY+A  E  KEMI L + L  +G   R S TL+ D++SAI L+K    H RTKHI +++H IR    +  L L+ +   +  AD+ TK ++
Sbjct:  102 VILLLYVDDMLIAGANIVEINKLKKLMSEYFEMKDLGAAKQILGMRIARDRIKGTLTLSQAEYIKRILSRFSMDNAKPVGTPLGNHFKLSKNQSPKSEEERYYMNKVPYASAVGSLMYAMICTRPDISHAVGVVSRYMSNPRKQHWEAVKWILRYLKGSTETCLCFSGKDLV---VQGYVDADLARDIDSRKSTTGFIYTYGGTAVSWGSNLQKTVSLSTTEAEYIAVSEVAKEMIWLQNFLEELGKE-RQSGTLYSDSQSAIFLAKNPAYHSRTKHISIKYHFIRSLLDDKQLLLEKICGRNNPADMLTKSVT 411          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A438EU98_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EU98_VITVI)

HSP 1 Score: 193 bits (490), Expect = 1.310e-54
Identity = 119/311 (38.26%), Postives = 171/311 (54.98%), Query Frame = 3
Query:  252 LLVALYVDDLVIAGRR-EKVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPKNSTE--YRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTK 1175
            +++ LYVDD++IAG   EK+   K    + F MKDLG+  ++LG+   RD+ NGT+ +SQ  Y+++ L R+  +    V TPL    K+S  +S     E  + ++  Y   +GSLMY    TRPD A+AV    R M  P +  + + K I RYL    D  + F G S     L+G+VD D A  ++ RK TTG+ F L G A SW    Q +VT S+TE EYVA  EAGKEMI L   L  +G   +    L  D++SAI L+K S  H ++KHI  ++H IR    + ++ L+ +      AD+ TK
Sbjct:   25 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK---LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKK-QEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTK 331          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A8J6HGY6_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HGY6_TENMO)

HSP 1 Score: 193 bits (491), Expect = 3.370e-54
Identity = 126/316 (39.87%), Postives = 171/316 (54.11%), Query Frame = 3
Query:  240 GETSLLVALYVDDLVIAGRREKVYEFKHN-KRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYG-FDVCPGVPTPLEGKVKVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTKEL 1181
            GE S L+A+YVDD+++A R  ++ +   N   Q F   DLG +   LG+E   +R  G I I Q  YI E LKR+G FD  P V  PL+  VK+   E       P  +  YR +VG+L Y ST TRPD ++AV   G+      +  +++ KR+ RYL     LG+TF  KS     LEGFVD D      DRK  TGY F L G   SW  RKQ  V  SSTE EY+   EA KE  +L   L  +G     S  ++EDN  A+ L+     H R+KHI +++H IR+  +E +L L +V + + +AD+ TK L
Sbjct:   72 GEDSTLIAIYVDDIIVASRDPRMADRLFNCLSQKFETSDLGEIGYCLGMEF--NRTLGAINIFQTGYINELLKRFGMFDSKP-VCAPLDPGVKLLKSEEP-----PDENLPYRELVGALTYLSTATRPDISFAVSYLGQFNNCYGKPHWTAAKRVLRYLKGTTKLGLTFFKKSQF---LEGFVDADWGNCPNDRKSFTGYVFMLGGGPVSWDARKQKTVALSSTEAEYMGLAEATKEASYLRSFLIELGLDHLSSVVVYEDNLGALKLAANPTFHNRSKHIDIKYHFIRDAVKEKILSLSHVSSAEMVADVLTKGL 376          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 203 bits (516), Expect = 4.620e-54
Identity = 116/324 (35.80%), Postives = 187/324 (57.72%), Query Frame = 3
Query:  219 ILSRDDGGETSLLVALYVDDLVIAGRR-EKVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTKELSK 1187
            I  +++ G+   +VA++VDD+++AG+  EK+ + K +  + F++KD+G L  +LG++  ++  +  + I Q +Y    +K+YG + C  V TP++   K+    SA + SE  N  EY+  VGSL+Y S+ TRPD  +AV+   +   +P    +++ KRIFRYL    + G+ +   +N      GF D D A  + DRK T+GY F++NG A SW  +KQ  V  S+ E EYVA   A +E + +  LL  +        T++EDN+SAI +SK    H R+KHI +++H +R+   +  L + Y  TG  LAD+FTK + K
Sbjct:  941 IYVKEEDGDI-FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLV---SAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPD--CVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPK 1256          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM)

HSP 1 Score: 192 bits (488), Expect = 6.570e-54
Identity = 115/313 (36.74%), Postives = 168/313 (53.67%), Query Frame = 3
Query:  240 GETSLLVALYVDDLVIAGRR-EKVYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPL---EGKVKVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADI 1166
            G+   LVA+YVDD+V+A      + E K+  ++ F + DLG ++ +LGI   RDR   +I++SQ  Y+ E L R+G      + TP+   +  V+   PE   +         Y+ ++GS+M+   GTRPD A+ +    +    P      +  R+ RYL    D  + + G       L GFVD D A  V DR+  +G+ FK+   A SW  +KQ     SST+ EYVA   A KE++ L  L   I   C+G TTLF DN+SA+ +++    H RTKHIG R H +RE   +G L LKY+ TGDQ+AD+
Sbjct:   83 GDKLTLVAVYVDDMVLASTSLADLEEVKNLFKKSFNITDLGDINWILGIHVERDRTKRSISLSQERYVEEVLSRFGQQDAHPMVTPMLANQRLVRTEKPEVDIRT--------YQRILGSVMWAMLGTRPDLAFTIGSLSQFSSAPTEEALHALMRMLRYLCRTSDTRLVYRGTQKEE--LTGFVDADWAGNVNDRRSISGFVFKVADGAISWSSKKQGSTALSSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMADV 385          
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 199 bits (507), Expect = 8.640e-54
Identity = 114/312 (36.54%), Postives = 177/312 (56.73%), Query Frame = 3
Query:  255 LVALYVDDLVIAGRREK-VYEFKHNKRQCFRMKDLGSLSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVKVSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMEDPCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*AEGVEDRKFTTGYKFKLNGVAASWCYRKQ*LVTWSSTEVEYVAEGEAGKEMIHLGDLLGSIGSGCRGSTTLFEDNKSAINLSKESGAHCRTKHIGVRWHGIREWFREGVLGLKYVQTGDQLADIFTKELSK 1187
            ++A+YVDD+++AG  +K + E K    + F +KD+G L+  LG++  +    G I + Q +Y    LK++G +    V TP++   K+      ++  +PK   +++  VGSL+Y ST TRPD AYAV+   R    P +  +++ KRI RYL    +LG+ +    +      GF D D A    DRK  +GY F+++G A SW  +KQ  V  S+ E EY+A   A +E + +  L+  +     G T +FEDN+SAI ++K S  H R KHI +++H IRE    GV+ L+Y  T D +AD+FTK LS+
Sbjct:  428 IIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDPK---QFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLY--NKDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCVALSTAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTKGLSQ 734          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15953.3452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006A737CF4.490e-5840.00uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A7D9M6E1_PARCT1.310e-5735.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0V0T740_9BILA1.260e-5539.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1NJF3_9BILA1.440e-5539.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A835JQG2_9ROSI8.490e-5537.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438EU98_VITVI1.310e-5438.26Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6HGY6_TENMO3.370e-5439.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT4.620e-5435.80Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A4S4L116_9AGAM6.570e-5436.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A498M2F0_LABRO8.640e-5436.54Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15953contigH-paniculata_contig15953:1270..2522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score116.3
Seed ortholog evalue1.6e-23
Seed eggNOG ortholog15368.BRADI4G26120.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INI6@38820,3M96M@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1187
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15953.3452.1prot_H-paniculata_contig15953.3452.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15953 1663..2310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.571808-UTR-H-paniculata_contig15953:1269..16621622929274.571808-UTR-H-paniculata_contig15953:1269..1662Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15953 1270..1662 -
1691480796.4244769-UTR-H-paniculata_contig15953:1269..16621691480796.4244769-UTR-H-paniculata_contig15953:1269..1662Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15953 1270..1662 -
1622929274.6086323-UTR-H-paniculata_contig15953:2310..25221622929274.6086323-UTR-H-paniculata_contig15953:2310..2522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15953 2311..2522 -
1691480796.4544847-UTR-H-paniculata_contig15953:2310..25221691480796.4544847-UTR-H-paniculata_contig15953:2310..2522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15953 2311..2522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.583877-CDS-H-paniculata_contig15953:1662..19031622929274.583877-CDS-H-paniculata_contig15953:1662..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15953 1663..1903 -
1691480796.4359136-CDS-H-paniculata_contig15953:1662..19031691480796.4359136-CDS-H-paniculata_contig15953:1662..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15953 1663..1903 -
1622929274.5951543-CDS-H-paniculata_contig15953:1969..23101622929274.5951543-CDS-H-paniculata_contig15953:1969..2310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15953 1970..2310 -
1691480796.4452276-CDS-H-paniculata_contig15953:1969..23101691480796.4452276-CDS-H-paniculata_contig15953:1969..2310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15953 1970..2310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15953.3452.1

>prot_H-paniculata_contig15953.3452.1 ID=prot_H-paniculata_contig15953.3452.1|Name=mRNA_H-paniculata_contig15953.3452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MLILSRDDGGETSLLVALYVDDLVIAGRREKVYEFKHNKRQCFRMKDLGS
LSRVLGIEARRDRLNGTITISQGSYIREALKRYGFDVCPGVPTPLEGKVK
VSAPESANKRSEPKNSTEYRGMVGSLMYPSTGTRPDTAYAVHQAGRRMED
PCRGDFSSCKRIFRYLSTVPDLGITFGGKSNNGHGLEGFVDVD*
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mRNA from alignment at H-paniculata_contig15953:1270..2522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15953.3452.1 ID=mRNA_H-paniculata_contig15953.3452.1|Name=mRNA_H-paniculata_contig15953.3452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1253bp|location=Sequence derived from alignment at H-paniculata_contig15953:1270..2522- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGTGCCGTATTTGAACGCCCCAGTAGAAGAAGAGTTGTT TGCTAAGCTACCCTCCGAGGTTTCCCCTTTCTTCCGAGACGTACCGTTTG TGCGTCGCCTGAGTAAAAGCCTGTACGGTCTCAAGCAGAGCGGCCATAAC TGGAATAACACTCTTAGCGATTCTCTTGTTGGGATAGGACTCAACCATTC TACTACCGATTCATGCTTATACTTTCCCGCGACGATGGGGGAGAGACAAG CCTTCTGGTGGCCCTCTATGTTGACGACCTGGTCATTGCTGGCCGTCGTG AGAAAGTATACGAGTTCAAGCATAACAAACGTCAGTGTTTTAGGATGAAA GACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGCACGACGTGACCG CCTTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGAGGCAC TAAAAAGATACGGTTTTGACGTGTGTCCAGGGGTACCCACCCCTTTAGAG GGAAAAGTGAAGGTTTCGGCACCCGAGTCGGCCAACAAGCGCTCCGAGCC GAAGTCACCCGGGGCTGCACTGTCGGGCATAGGCGCAGGAGTTCAAAAAA GCAGCAGAGGGAGAAGTAGAAATTCAACTGAATACAGAGGCATGGTAGGA TCACTCATGTACCCCTCGACAGGAACTAGACCTGATACAGCATACGCGGT ACACCAAGCAGGACGTCGTATGGAGGACCCATGTCGGGGAGACTTCAGTT CATGCAAGCGCATTTTTCGTTACCTCAGTACTGTGCCTGACCTCGGCATT ACTTTCGGCGGTAAGAGTAATAATGGTCACGGTCTGGAAGGATTCGTTGA TGTCGATTAGGCGGAAGGTGTCGAGGACCGAAAGTTCACAACAGGATACA AATTCAAGCTAAACGGTGTTGCGGCAAGTTGGTGCTACAGGAAGCAATAG TTAGTCACGTGGTCCAGTACAGAGGTAGAGTACGTTGCTGAAGGAGAAGC GGGAAAGGAGATGATACATCTTGGGGATTTACTGGGATCGATAGGTTCCG GATGCAGGGGGAGCACGACATTGTTTGAGGACAATAAATCAGCCATTAAT CTCAGCAAGGAATCTGGCGCACACTGCAGGACAAAGCACATCGGAGTGCG CTGGCACGGAATTCGAGAGTGGTTTCGGGAAGGAGTATTGGGGTTGAAAT ACGTGCAGACCGGCGACCAACTTGCTGACATTTTTACGAAAGAACTCAGC AAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15953:1270..2522-

>mRNA_H-paniculata_contig15953.3452.1 ID=mRNA_H-paniculata_contig15953.3452.1|Name=mRNA_H-paniculata_contig15953.3452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig15953:1270..2522- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTATACTTTCCCGCGACGATGGGGGAGAGACAAGCCTTCTGGTGGC
CCTCTATGTTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTATACG
AGTTCAAGCATAACAAACGTCAGTGTTTTAGGATGAAAGACTTGGGCTCT
CTCTCGCGCGTGTTGGGAATAGAAGCACGACGTGACCGCCTTAATGGTAC
CATAACCATCTCGCAGGGTAGCTACATCCGCGAGGCACTAAAAAGATACG
GTTTTGACGTGTGTCCAGGGGTACCCACCCCTTTAGAGGGAAAAGTGAAG
GTTTCGGCACCCGAGTCGGCCAACAAGCGCTCCGAGCCGAAATGCTTATA
CTTTCCCGCGACGATGGGGGAGAGACAAGCCTTCTGGTGGCCCTCTATGT
TGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTATACGAGTTCAAGC
ATAACAAACGTCAGTGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGCGC
GTGTTGGGAATAGAAGCACGACGTGACCGCCTTAATGGTACCATAACCAT
CTCGCAGGGTAGCTACATCCGCGAGGCACTAAAAAGATACGGTTTTGACG
TGTGTCCAGGGGTACCCACCCCTTTAGAGGGAAAAGTGAAGGTTTCGGCA
CCCGAGTCGGCCAACAAGCGCTCCGAGCCGAAAAATTCAACTGAATACAG
AGGCATGGTAGGATCACTCATGTACCCCTCGACAGGAACTAGACCTGATA
CAGCATACGCGGTACACCAAGCAGGACGTCGTATGGAGGACCCATGTCGG
GGAGACTTCAGTTCATGCAAGCGCATTTTTCGTTACCTCAGTACTGTGCC
TGACCTCGGCATTACTTTCGGCGGTAAGAGTAATAATGGTCACGGTCTGG
AAGGATTCGTTGATGTCGATTAGAAATTCAACTGAATACAGAGGCATGGT
AGGATCACTCATGTACCCCTCGACAGGAACTAGACCTGATACAGCATACG
CGGTACACCAAGCAGGACGTCGTATGGAGGACCCATGTCGGGGAGACTTC
AGTTCATGCAAGCGCATTTTTCGTTACCTCAGTACTGTGCCTGACCTCGG
CATTACTTTCGGCGGTAAGAGTAATAATGGTCACGGTCTGGAAGGATTCG
TTGATGTCGATTAG
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