prot_H-paniculata_contig15950.3450.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig15950.3450.1
Unique Nameprot_H-paniculata_contig15950.3450.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length244
Homology
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: D7FHG5_ECTSI (Ubiquitination factor E4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG5_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 6.740e-27
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0
Query:    1 MCPIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIR 64
            MCPIGCDIMRDPVTLPTSGQ+MDR +ITRHLLSD  DP+NRKPLTV+ML PNDALR EIEEWIR
Sbjct:  752 MCPIGCDIMRDPVTLPTSGQIMDRPAITRHLLSDAQDPYNRKPLTVEMLEPNDALRGEIEEWIR 815          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: A0A6T6AM48_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6AM48_9RHOD)

HSP 1 Score: 94.0 bits (232), Expect = 3.020e-18
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 0
Query:    3 PIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRSQS 70
            P+   +MRDPVTLPTSGQVMDR +ITRHLLSD  DPFNRK LT DML+PN+ LR EIE +I  +R +S
Sbjct:  983 PVMATLMRDPVTLPTSGQVMDRANITRHLLSDPTDPFNRKLLTEDMLIPNEELRREIEAFIEMKREES 1050          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: A0A0K2VHY9_LEPSM (U-box domain-containing protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VHY9_LEPSM)

HSP 1 Score: 90.1 bits (222), Expect = 6.210e-17
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 0
Query:    3 PIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRSQSRQ 72
            PI   +MRDPVTLP SGQ++DR +I RHLLSD  DPFNR PL++D ++PN+AL+EEI EW+++Q+  + Q
Sbjct:  890 PIMSILMRDPVTLPDSGQIVDRSTIARHLLSDQSDPFNRMPLSMDRILPNEALKEEIHEWMKKQKEAANQ 959          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: UPI001E1DFCF1 (ubiquitin conjugation factor E4 A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DFCF1)

HSP 1 Score: 89.0 bits (219), Expect = 1.370e-16
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 0
Query:    3 PIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRSQ 69
            PI   +M+DPV LPTSG ++DR  I+RH+LSD MDPFNR+PLT+DM+VP D LRE I  WI++Q+S+
Sbjct:  563 PIMGTLMKDPVKLPTSGNIVDRAIISRHILSDQMDPFNRQPLTLDMVVPVDDLRERIHAWIKEQKSE 629          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: A0A7S4QYQ6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYQ6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.100e-16
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 0
Query:    3 PIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRS 68
            P+ C  M+DPV LPTSG V+DR +I +HLL+D +DPFNRKPLTVDM++P   L+E++E W+ ++RS
Sbjct:  807 PLMCTFMKDPVLLPTSGTVIDRSTIMQHLLNDPVDPFNRKPLTVDMIIPATELKEKMENWLEEKRS 872          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: D8LU34_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU34_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 9.550e-16
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 0
Query:    3 PIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRSQS 70
            P+ C +MRDPV LPTSG ++DR +I +HLL+D+MDPFNR+PLT DM+ P   LRE IEE++ ++ SQS
Sbjct:  892 PVLCHVMRDPVLLPTSGTILDRSTIVQHLLNDSMDPFNRQPLTEDMVEPQTELRERIEEFLARRGSQS 959          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: UPI001E1DCD29 (ubiquitin conjugation factor E4 A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCD29)

HSP 1 Score: 86.7 bits (213), Expect = 9.720e-16
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 0
Query:    3 PIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRS 68
            PI   +M+DPV LPTSG ++DR  I+RH+LSD MDPFNR+PLT+DM+ P D LRE+I  WI++Q+S
Sbjct:  980 PIMGTLMKDPVKLPTSGNIVDRAIISRHILSDQMDPFNRQPLTLDMVEPVDDLREKIHAWIKEQKS 1045          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: UPI000719C219 (ubiquitin conjugation factor E4 A-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C219)

HSP 1 Score: 86.3 bits (212), Expect = 1.300e-15
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 0
Query:    3 PIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRSQ 69
            PI   IMRDPV LPTSG  MDR +I RH+LSD  DPFNR+PL+++M+VPN+ L+++I EWI+  R Q
Sbjct:  918 PILGTIMRDPVLLPTSGHTMDRSTIARHILSDQSDPFNRQPLSMEMVVPNEQLKQQINEWIQAHRDQ 984          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: UPI001B8876E7 (LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 A-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8876E7)

HSP 1 Score: 84.7 bits (208), Expect = 1.380e-15
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 0
Query:    3 PIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRSQSRQET 74
            P+  +IM DPVTLPTS + M+R  I RHLLSD  DPF+R+PLT DML+ ND LR+ IEEW ++Q+S +++ET
Sbjct:  259 PLMAEIMSDPVTLPTSXKTMERSVIIRHLLSDQTDPFSRQPLTADMLISNDELRQRIEEW-KEQKSINKKET 329          
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Match: A0A7R8CQ12_LEPSM (UBE4A n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CQ12_LEPSM)

HSP 1 Score: 84.0 bits (206), Expect = 1.710e-15
Identity = 37/62 (59.68%), Postives = 51/62 (82.26%), Query Frame = 0
Query:   11 DPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLVPNDALREEIEEWIRQQRSQSRQ 72
            DPVTLP SGQ++DR +I RHLLSD  DPFNR PL++D ++PN+AL+EEI EW+++Q+  + Q
Sbjct:  230 DPVTLPDSGQIVDRSTIARHLLSDQSDPFNRMPLSMDRILPNEALKEEIHEWMKKQKEAANQ 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15950.3450.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG5_ECTSI6.740e-2785.94Ubiquitination factor E4 n=1 Tax=Ectocarpus silicu... [more]
A0A6T6AM48_9RHOD3.020e-1867.65Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A0K2VHY9_LEPSM6.210e-1758.57U-box domain-containing protein n=3 Tax=Lepeophthe... [more]
UPI001E1DFCF11.370e-1661.19ubiquitin conjugation factor E4 A-like n=1 Tax=Mer... [more]
A0A7S4QYQ6_9STRA5.100e-1657.58Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
D8LU34_ECTSI9.550e-1658.82U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001E1DCD299.720e-1660.61ubiquitin conjugation factor E4 A-like n=1 Tax=Mer... [more]
UPI000719C2191.300e-1559.70ubiquitin conjugation factor E4 A-like n=1 Tax=Pri... [more]
UPI001B8876E71.380e-1558.33LOW QUALITY PROTEIN: ubiquitin conjugation factor ... [more]
A0A7R8CQ12_LEPSM1.710e-1559.68UBE4A n=1 Tax=Lepeophtheirus salmonis TaxID=72036 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..72
NoneNo IPR availablePANTHERPTHR13931UBIQUITINATION FACTOR E4coord: 2..72
NoneNo IPR availablePANTHERPTHR13931:SF2UBIQUITIN CONJUGATION FACTOR E4 Acoord: 2..72
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1..67
IPR003613U box domainSMARTSM00504Ubox_2coord: 2..62
e-value: 2.5E-18
score: 76.9
IPR003613U box domainPFAMPF04564U-boxcoord: 1..67
e-value: 1.9E-22
score: 79.2
IPR003613U box domainPROSITEPS51698U_BOXcoord: 1..69
score: 23.328
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..75
e-value: 5.1E-23
score: 82.9
IPR003903Ubiquitin interacting motifPROSITEPS50330UIMcoord: 207..226
score: 9.047

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15950contigH-paniculata_contig15950:3179..5732 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15950.3450.1mRNA_H-paniculata_contig15950.3450.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig15950 2672..5825 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig15950.3450.1 ID=prot_H-paniculata_contig15950.3450.1|Name=mRNA_H-paniculata_contig15950.3450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MCPIGCDIMRDPVTLPTSGQVMDRISITRHLLSDTMDPFNRKPLTVDMLV
PNDALREEIEEWIRQQRSQSRQETLAPPVTPQSEEANGGEGKVLPCADPP
PPPPRGGGAAPLPQGGGAAPSFPTVAAAEVKESSASAMEMSPIGLSESGA
AKGSSTPPLASSNAASGSPPPPRGITTSTGEANELHPVPLHDNSADDQCN
DDELGDDEEQLMQQALALSLETAAAGDGTAMDSEEGDTSTGHN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD
IPR003903UIM_dom