mRNA_H-paniculata_contig15947.3448.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15947.3448.1
Unique NamemRNA_H-paniculata_contig15947.3448.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: D7G467_ECTSI (Mitochondrial helicase twinkle n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G467_ECTSI)

HSP 1 Score: 855 bits (2208), Expect = 2.910e-307
Identity = 422/593 (71.16%), Postives = 478/593 (80.61%), Query Frame = 1
Query:    1 MAFRLSGAEVVVKQCPFCHDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTS--AMPTALQTVRDICES--SHGG----SNDLSSATLVVPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEGYEDAECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGVVVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPKADDPKPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFAGKPAADLRRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGA-DGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ 1752
            M FR++G EVVVK+CPFCHDT  KADNMWKL IGL  GGAW+CHRC ASGSWYDLKRR G+G A   S  AMP +  + R+      +HG     +   ++    +PD+QR R+YP NL+ N RF  V +YLSG  PGQRG++  VL+KYGVGCA+Y++P E GY +A+ ITFPW+VNK D+  EEV  L+ F+K KYG  S  PD V VRVKARAV NK+ QRLDPAGGRWGIFGLHTVPD AT VV+TEGE+DAMAVYQATG PAVSLPNGASSLPL VLPLLERF KIYLWMD D  GQAGV+KFV KLG RRCLVVRP  DDP PPKDANEAL+AGRNLQ+FLDGA    HDDI TFQDLR  V+HE QNP EY GT L+SFPR TRI+KGLR GELTV+TGPTGSGKTTILSQLSLDLA GG++TLWGSFE+KNTRLM KML QFAG+P ADL   P++L A ADRFQ+LPL F+RFHGGT+VD+V+DAMDY VYA DVQHIILDNLQFMLT  + +G G +  G FDKFDAQD+ALDKFRKFATE NVHI LVIHPRKEDEG+KLTTSSIFGSAKATQEADLV+ILQ
Sbjct:    1 MEFRVAGGEVVVKECPFCHDTGGKADNMWKLYIGLNNGGAWMCHRCAASGSWYDLKRRAGSGGARFVSQVAMPRSSTSTRNTPNPRRTHGEEFHVTQQRAAGLRPIPDEQRARSYPTNLLHNPRFDQVMDYLSGTEPGQRGIKKEVLVKYGVGCAVYKYPGEAGYVEAQSITFPWIVNKKDIPPEEVKGLEKFVKDKYGEKSRIPDAVTVRVKARAVRNKQWQRLDPAGGRWGIFGLHTVPDGATEVVLTEGEYDAMAVYQATGKPAVSLPNGASSLPLEVLPLLERFNKIYLWMDHDGAGQAGVDKFVLKLGTRRCLVVRPLEDDPNPPKDANEALLAGRNLQDFLDGASSTKHDDIQTFQDLRQKVIHELQNPLEYSGTGLQSFPRFTRIIKGLRRGELTVLTGPTGSGKTTILSQLSLDLAAGGLSTLWGSFEIKNTRLMQKMLHQFAGRPVADLAGSPDSLRAVADRFQALPLSFLRFHGGTNVDEVIDAMDYAVYANDVQHIILDNLQFMLTRNSREGHGGKRPGPFDKFDAQDLALDKFRKFATEHNVHITLVIHPRKEDEGYKLTTSSIFGSAKATQEADLVVILQ 593          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: A0A835ZLV9_9STRA (Mitochondrial helicase twinkle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLV9_9STRA)

HSP 1 Score: 699 bits (1805), Expect = 1.530e-245
Identity = 350/585 (59.83%), Postives = 425/585 (72.65%), Query Frame = 1
Query:    1 MAFRLSGAEVVVKQCPFCHDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATLVVPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEGYEDAECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGVVVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPKADDPKPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFAGKPAADLRRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKED-EGHKLTTSSIFGSAKATQEADLVIILQ 1752
            + +R++G++V VK+CPFCHDT+ + DNMWKL  G + GGA+ CHRCG++GSWYD KRR G      T     AL+  R    S+  G +D     +  P+Q+  R Y   LMS+   A VRE+L+G  PGQRG+   VL+KYGVG A+Y FP E GY +A+C+TFPW   + ++ +EE  +L A  +   G      D V+ R+K RAV+NK  QRLDPAGGRWG+FG HTVP DAT VV+TEGEFDA+AVYQATGVPAVSLPNG  SLP+ VLP+LERF  IYLWMD+DAPGQ G  KF +KLG RR  +VRP ADD  P KDANEAL+AG++L   L  AR    D+I+ F DLR  VLHE  NP E+VGT L SFPRLT IVKG R GEL+V TG TG+GKTT+LSQ+SLDLA  GV+TLWGSFEV+NTRL+ KMLQQF G+P   L     ALSA  DRF++LPL FM FHGGTDVD+VL+AM+Y VY  DV HIILDNLQFML+  A  + R     +DKFDAQD+A++KFRKFATERNVHI LVIHPRKED E  +L+ +S+FGSAK TQEADLV+ILQ
Sbjct:   45 LEYRVAGSQVNVKRCPFCHDTRGQIDNMWKLYFGAESGGAYFCHRCGSNGSWYDFKRRVGG--VEMTGLDAAALE--RSSSGSTRAGEHDTPGKPM--PNQRLARAYAGQLMSHPGKARVREFLTGKAPGQRGIDRAVLLKYGVGSAVYSFPTEHGYREADCVTFPWHALRTEMSTEEFTELLAGTEADSGAGGQPVDSVITRLKVRAVDNKAWQRLDPAGGRWGLFGWHTVPPDATEVVLTEGEFDALAVYQATGVPAVSLPNGCRSLPVDVLPMLERFTTIYLWMDNDAPGQEGAAKFARKLGERRVRIVRPPADDAAPAKDANEALLAGKDLAALLAAARPLQRDEILHFSDLRESVLHEIMNPMEFVGTPLESFPRLTEIVKGFRQGELSVFTGGTGAGKTTVLSQISLDLARRGVSTLWGSFEVRNTRLVKKMLQQFGGRPPEALAGDAPALSALMDRFEALPLCFMGFHGGTDVDEVLEAMEYAVYVNDVSHIILDNLQFMLSRSATSAKRGGMAQWDKFDAQDIAMEKFRKFATERNVHITLVIHPRKEDDEKQRLSLTSVFGSAKMTQEADLVLILQ 623          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: A0A8K1FKX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKX8_PYTOL)

HSP 1 Score: 580 bits (1494), Expect = 1.180e-196
Identity = 312/583 (53.52%), Postives = 391/583 (67.07%), Query Frame = 1
Query:   31 VVKQCPFCHDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRT-GNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATLV-VPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEGYED-AECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGV------VVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPKADDPKPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFAGKPAADLRRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ 1752
            VVK+CPFCH T+ K DN++KL I  K  G + CHRCGA+GSW+D K++  GN +      M           +   G S D   A ++ V D Q+      NL  +  F  +R+YL      +RG+  +VL+KYGVG     F  E G +  A+CI+FPW+  + DL +  V             +SS+P         V+R+K RA+ +K +QRL P GG WG+FG +TVP  A  +VVTEGEFDAMAVYQATG+PAVSLPNG  SLP  VLPLLERF+KIYLWMD+DAPGQA VEKF  KLG+ RC +VRP AD  KP KDAN+AL+AG +L++ +  A I PHD I TF+ LR DV  E  NP    G   R+ P L R++KG R GE+T++TGPTG GKTT+LSQLSLDL   GVNTLWGSFE+KNTRL+HKML Q AGK   +LR    A  A AD+F++LP+ F+RF G TDVD+VLDAM+Y VYAYDVQHI+LDN+QFM+     G GR     +DKF+ QD ALDKFRKFA+++NVH+ LVIHPRKE E   LT +S+FG+AKATQEAD V+ILQ
Sbjct:   42 VVKECPFCHPTRGKVDNLFKLYIH-KSKGVYKCHRCGAAGSWFDFKQKLQGNVSVGSVGGMLHG--------DGGPGASLDPREAKVISVLDNQKAMAIQRNLFDDPDFEPIRQYLIE----KRGISEQVLMKYGVGAIEQPFRNENGEQVVAKCISFPWMARQGDLDTMGVL-----------RSSSSPSSADKNQFDVIRLKIRALEDKSQQRLVPKGGSWGLFGWNTVPTSAEEIVVTEGEFDAMAVYQATGMPAVSLPNGCQSLPPNVLPLLERFKKIYLWMDNDAPGQASVEKFATKLGITRCFIVRPPADSKKPIKDANDALLAGADLKKLIHLAEIIPHDQIATFEQLRRDVYEEIVNPIRACGVQSRTLPSLNRLLKGHRLGEVTILTGPTGCGKTTLLSQLSLDLCGQGVNTLWGSFEIKNTRLIHKMLTQLAGK---NLRGDVNAFEAVADKFEALPMYFLRFFGSTDVDEVLDAMEYAVYAYDVQHILLDNVQFMMA----GQGR----GYDKFERQDAALDKFRKFASQKNVHLTLVIHPRKEQEDVDLTLTSVFGTAKATQEADNVLILQ 589          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: A0A2D4C4T1_PYTIN (Twinkle protein putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4T1_PYTIN)

HSP 1 Score: 556 bits (1432), Expect = 6.350e-189
Identity = 305/579 (52.68%), Postives = 377/579 (65.11%), Query Frame = 1
Query:    1 MAFRLSGAEVVVKQCPFCHDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATLVVPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEGYEDA-ECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGVVVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPKADDPKPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFAGKPAADLRRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEAD 1734
            +AFR S + +++K+CPFCH T+ KADN++KL +  +R G + CHRCGA+GSW+D KR   +G+ + + A  TAL           GG    S AT              NL  +  FA VR YL+  R    GL   VL KYGVG     F  + G   A  CI FPW+   +DL +  V        T   + +      VVR+K R V +KR+QRL P GG WG+FG +T P  A  +VVTEGEFDAMAV+QATG+PAVSLPNG  SLP  VLPLLERF+KI LW+D+DA GQA V+KF  KLGV RC++VR  A +P+  KDAN+AL AG +L   L  A I PH  I TF+ LR DV  E  NP    G   RS P L  ++KG R GE+TV+TGPTG GKTT+LSQLSLDL   GV TLWGSFE+KNTRLMHKML Q AG+    LR   +A  A ADRF++LP+ F+RF G TDVD+VLDAM+Y VYAYDVQH++LDN+QFM+     G GR     +DKF+ QD ALDKFR+FA+++NVH+ LVIHPRKE E   LT SS+FG+AKATQEAD
Sbjct:   69 LAFRASDSHLIIKECPFCHATRGKADNLFKLYVH-RRQGVFKCHRCGAAGSWFDFKRSLQSGSVSLSPAS-TALH---------GGGGGGASPATWRRGQGHLAMAIQRNLTEDPAFAGVRAYLTQTR----GLSEHVLAKYGVGAIEQPFRNDAGERVAVPCIAFPWMARPSDLDAMGVVVASGAAPTAADDRNQFD---VVRLKLRGVADKRQQRLVPKGGSWGLFGWNTXPAAAEELVVTEGEFDAMAVHQATGLPAVSLPNGCQSLPPAVLPLLERFKKIXLWLDNDAAGQASVDKFAAKLGVARCVIVRAPAGEPRV-KDANDALRAGVDLSALLASAEILPHSQITTFEQLRRDVYEEIVNPLRACGVQSRSLPALNALLKGHRLGEVTVLTGPTGCGKTTLLSQLSLDLCAQGVTTLWGSFEIKNTRLMHKMLTQLAGR---GLRGDVDAFEAVADRFEALPMYFLRFFGSTDVDEVLDAMEYAVYAYDVQHVLLDNVQFMMA----GQGR----GYDKFERQDAALDKFRRFASQQNVHVTLVIHPRKEQEDADLTLSSVFGTAKATQEAD 617          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: A0A5D6XVL9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVL9_9STRA)

HSP 1 Score: 558 bits (1437), Expect = 1.120e-187
Identity = 300/592 (50.68%), Postives = 386/592 (65.20%), Query Frame = 1
Query:   10 RLSGAEVVVKQCPFCHDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSAT----LVVPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEGYE-DAECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGV--VVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPKADDP----KPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFAGKPAADLRRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ 1752
            R +    VV++CPFCH T  +ADN++KL +  K  G + CHRCGASGSW+D K +  +      S+    L          HGG N ++ A     +   D  +      NL+    F  V  YL+     QRG+++ VL KYGVG     F  E G +  A+CI+FPW+  ++DL +  V   D       G T++    +  V+R+K RAV++K +QRL P GG WG+FG +TVP  +  +V+TEGEFDAMAV+QATG+PA+SLPNG  SLP  VLPLLERF K++LWMD+DA GQA VEKF  K+GV RC +VRP A       KP KDAN+AL+AG +L + + GA   PH  I TF +LR +V  E  NP    G   R+ P L R++KG R GE+TV+TGPTG GKTT+LSQLS+DL   GV+TLWGSFE+KNTRL+HKML Q AG+    L    +A    AD+F++LP+ FMRF G TDVD+VLDAM+Y VYAYDVQHI+LDN+QFM+     G GR     FDKF+ QD ALDKFRKFA+++NVH+ LVIHPRKE E   LT +S+FG+AKATQEAD V+ILQ
Sbjct:   58 RETDTHFVVRECPFCHPTHGRADNLFKLYVH-KAQGVYKCHRCGASGSWFDFKSKLQSNVGV--SSADGVL----------HGGGNSIADAAAPKVIQALDNAKAMAIQKNLLEEPEFKAVLTYLTE----QRGIRLDVLQKYGVGAIEQPFRNENGDQVPAKCISFPWMARQHDLDAMGVI-CDDLASRPAGGTANGDKNLFNVIRLKIRAVDDKSKQRLVPKGGSWGLFGWNTVPTASDEIVITEGEFDAMAVHQATGLPAISLPNGCQSLPPSVLPLLERFSKVFLWMDNDASGQANVEKFASKIGVARCYIVRPSAASVTTAGKPVKDANDALLAGLDLAQIMHGAERIPHSQITTFDELRREVYEEILNPLRACGVQSRTLPSLNRLLKGHRMGEVTVLTGPTGCGKTTLLSQLSIDLCGQGVSTLWGSFEIKNTRLIHKMLNQLAGR---SLEGDIKAFEGAADKFEALPMYFMRFFGSTDVDEVLDAMEYAVYAYDVQHILLDNIQFMMA----GQGR----GFDKFERQDAALDKFRKFASQKNVHLTLVIHPRKEQEDVDLTLTSVFGTAKATQEADNVLILQ 620          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: A0A7S2WTT8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT8_9STRA)

HSP 1 Score: 549 bits (1414), Expect = 4.920e-187
Identity = 302/588 (51.36%), Postives = 386/588 (65.65%), Query Frame = 1
Query:   31 VVKQCP-----FCHDTKN--KADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATLVVPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEGYEDAECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAP---DGVVVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPKADDPKPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQF---AGKPAAD-LRRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ 1752
            VVK C       C    N  K DN +K+ I  +  GAW CHRCGA GSWYDLKR       A  S+M  A        E S   +  L    L+  D+ +   + +    N +   +R YL      QRGL + VL+KYGVGCA + F  E+ Y D  C TFPW++++  L  ++ ADL         NTS+ P   + V+ RVKARA ++K  QRL P G  WG+FGLHTVP+DAT +V+TEGEFDAMAVYQATG+PAVSLPNGASSLP+ VLPLLE FEKIYLWMD+DA G++G EKF +KLG+ RC ++ P +  P  PKDANEAL+ G ++   +  AR   H  I TF  LR  VLHE  +P+ Y GT ++S P  T+++KG R GEL++ TGPTG GKTT+L+Q+SLDLAE G   LWGSFEV N RLM K+L Q    AG       + +  AL+  ADRFQ LP+ FM FHG +D+D VLDAMD+ VY +DVQHII+DNLQFML+       R   GS D+F+ QD+A+++ R+FAT+RNVH++LV+HPRKE+EG +L  +S+FGSAKATQEADLV+ILQ
Sbjct:   13 VVKDCSALPVGICEKPSNTHKTDNQFKVYIS-RTTGAWYCHRCGAKGSWYDLKRVFHGYGLATASSMVNA--------EPSTAPAKVLP---LIDKDENKRYVHALLHSENDQIVAMRNYLLH----QRGLSLPVLMKYGVGCASFSFSDEDRYVDTLCFTFPWIMSRAQLLQQD-ADL---------NTSTEPAHDEFVIRRVKARAYSHKGWQRLHPKGAGWGLFGLHTVPEDATTIVITEGEFDAMAVYQATGMPAVSLPNGASSLPVQVLPLLEPFEKIYLWMDNDAAGKSGCEKFARKLGLSRCHIISP-SPGPAVPKDANEALVQGCDIAAIIGDARPPEHSQISTFVHLRERVLHEMMHPELYAGTPVKSLPEFTKVIKGFRPGELSIFTGPTGVGKTTLLAQISLDLAEHGNRMLWGSFEVSNIRLMSKLLTQCGLGAGHQVTPGSKAYQAALNQTADRFQDLPMFFMTFHGSSDLDQVLDAMDFAVYVHDVQHIIIDNLQFMLS-------RNYRGSMDRFEQQDLAVERLRRFATDRNVHVSLVVHPRKEEEGIRLHLASVFGSAKATQEADLVVILQ 566          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: B8LE42_THAPS (Predicted protein n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LE42_THAPS)

HSP 1 Score: 552 bits (1423), Expect = 7.460e-187
Identity = 297/604 (49.17%), Postives = 380/604 (62.91%), Query Frame = 1
Query:    7 FRLSGAEVVVKQCPFC-HDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATLVVPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEG-------YEDAECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGVVVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRP---KADDPKPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQF------AGKPAADL-----RRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ 1752
            FR + + V++++CPFC   TK + DN +KL + +  GGA+ CHRCGA GSWYD K   G  +  Q S          +   S  GG    S++    P     +    N         + +YL+  R    GL   VL KYGVGCA Y F +++G       Y  + C+TFP                           S+    +  R+K R++  K  QRLDP GG +G+FG HTVP +AT +++TEGEFDAMAVYQATG PAVSLPNG  SLP+ VL LLE F+ +YLWMD+D PG+ G E F +KLGV RCL+V+P   +   P+PPKDANEAL+ G ++ E L+ A   PH+ I+ F DLR  V+HE  NP++Y GT + S P  T ++KG R GELTV+TGPTGSGKTT L Q SLDL E G+N LWGSFE+KNTRLMHK+LQQ+       G    DL     +    AL++ AD+F+SLP+ FM+FHGG+DVDDVLDAM+Y  Y +DV+HIILDN+QFM++     S    G SFDKFD QD+A++KFRKFATE NVH+ LV+HPRKEDEG KL  SS +GSAKATQEAD V+ILQ
Sbjct:   94 FRYTSSHVILQECPFCPKPTKGRVDNQYKLYVSVG-GGAYFCHRCGAKGSWYDFKSELGGFSVEQHS------NACANSDSSGQGGRQQASNSINSQPWNWNTK----NNNGMNYLGSILQYLTNTR----GLDRSVLRKYGVGCASYNFHSKDGSTVSGASYVSSMCVTFP--------------------------CSTHGPYIPRRIKVRSIEKKAWQRLDPPGGGFGLFGWHTVPHNATEIIITEGEFDAMAVYQATGRPAVSLPNGCRSLPMEVLLLLENFDTVYLWMDNDGPGREGAEMFARKLGVERCLLVQPSGKRGAPPEPPKDANEALLTGWDINELLEEASELPHERILKFSDLRDQVIHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTGSGKTTFLGQTSLDLVEQGINVLWGSFEIKNTRLMHKLLQQYMKDVLPVGLAEKDLSVEERQNAMTALTSLADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILDNMQFMISRQ---SVEGKGSSFDKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDEGAKLGMSSFYGSAKATQEADTVLILQ 653          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: A0A1Z5K003_FISSO (SF4 helicase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K003_FISSO)

HSP 1 Score: 546 bits (1408), Expect = 4.050e-185
Identity = 295/603 (48.92%), Postives = 390/603 (64.68%), Query Frame = 1
Query:    7 FRLSGAEVVVKQCPFC-HDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATLVVPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEGYEDAECITFPWVVNKNDLKSEE--------VADLDAFMKTKYGNTSSAPDGVVVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVP--DDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPKADDP------KPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFAGKPAADLRRHPEA---LSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGS-FDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ 1752
            +R +   V++++CPFC   TK KA+N +KL I L  GGA+ CHRCG  GSW+D K +T        SA  T                   +S  L +P  +    Y   L+ +Q    V  YL+  R    GL ++ L KYG+G A Y F  +  +E  EC+TFPW++  +D+  +E        V D ++F+                R+K RA+ NK  QRLDPAGG WG FG HT+   D +  +VVTEGE+DAMAV+QATG+PA+SLPNG  SLP+ VLPLLE +EKIYLWMD+D PGQ G   F +K+G+ RC +V+P  +          PKDAN+AL+ G +L+  +  A+  PH+ +++F DL+  VLHE  +P++Y GT L S P+ + +VKGLR GELTV+TGPTGSGKTT L Q+SLDLAE GVN LWGSFEV+NTRL+HK+LQQFA +P    R  P +   L   A RF  LPL F++FHG +++++VLDAM+Y VY +D +HI+LDNLQFM++        RSG S FDKFDAQD+A++KFRKFATERNVH++LV+HPRKEDE  +L  SSI+GSAKATQEAD V+ILQ
Sbjct:   54 YRTTNNHVILEECPFCTKPTKGKAENTFKLYIQLG-GGAYFCHRCGQGGSWFDFKAKTSKDPQVVKSASQTIYSPKMH------------ASQPLPMPSSRLQALYNSQLL-DQPDNDVLRYLTETR----GLTVKTLRKYGIGRAKYSFNNDGAWEPVECVTFPWIMKASDVSFQEELRGVKHPVEDPNSFLTR--------------RIKVRALENKAWQRLDPAGGGWGFFGYHTLDGADKSQPIVVTEGEYDAMAVWQATGIPAISLPNGCRSLPVEVLPLLEDYEKIYLWMDNDGPGQEGARVFSQKIGLGRCFMVQPTLESTGCLEFADLPKDANDALLQGHDLKRIIMEAKPVPHEQVLSFSDLQDSVLHEILHPEKYEGTKLPSLPKFSAVVKGLRRGELTVVTGPTGSGKTTFLGQMSLDLAEQGVNVLWGSFEVRNTRLIHKLLQQFARQPLP--RGDPSSADKLKDIAKRFGELPLHFLKFHGASELEEVLDAMEYAVYVHDCEHIVLDNLQFMISR--QNLASRSGNSNFDKFDAQDIAIEKFRKFATERNVHLSLVVHPRKEDESARLGISSIYGSAKATQEADNVLILQ 620          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: A0A1E7FNP2_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNP2_9STRA)

HSP 1 Score: 544 bits (1401), Expect = 2.930e-184
Identity = 293/589 (49.75%), Postives = 376/589 (63.84%), Query Frame = 1
Query:   10 RLSGAEVVVKQCPFC-HDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATLVVPDQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEE--GYEDAECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGVVV--RVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPKADDPKPPKDANEALM-AGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFA--GKPAADLRRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ 1752
            R +   VV+++CPFC   T+N+A N++KL I +  GGA+ CHRCG  GSWYDLK + G                 RD   +    + D ++                    N    ++ E         RGL  + L KYGVG   Y+FP +   GY + ECITFPW++ +                         P G  V  R+KARA+  K  QRLDP GG WG+FGLHT+P+DAT +V+TEGE+DAMAV QATG  AVSLPNG  SLP+  LPLLERF+KIYLWMD+D PG+ G EKF KKLGV R  +V+         KDAN+AL+    +L + ++ A + PHD IVTF+DLR+DVL E   P +Y GT + S PR T+I+KG R GE+TV+TGPTG+GKTT L Q+SLDLAE G N LWGSFE+KNTRL+HK+++QF+    P +      E   A ADRF++LPL FM+FHGG+D+D+VLDAM+Y VY  DV+HIILDN+QFM+T     +G++S  SFDKF+ QD+A++KFRKFATE NVH+ LV+HPRKED   KL+ SS FGSAKATQEAD VII+Q
Sbjct:   57 RTTSTHVVLRECPFCPKPTRNEASNLYKLHIQIG-GGAYFCHRCGTGGSWYDLKAKFGG------------FNVERDHPNNDDSKNIDSTNDXXXXXXXXXXXXXXXXXXKNDVLRYLTEV--------RGLNTKTLRKYGVGKGAYQFPCDVSGGYRETECITFPWIMRE------------------------IPTGAFVTRRIKARALEKKAWQRLDPPGGGWGLFGLHTIPNDATEIVLTEGEYDAMAVSQATGRHAVSLPNGCRSLPVQTLPLLERFDKIYLWMDNDEPGREGAEKFAKKLGVNRTYIVQ-----CLEAKDANDALLNKDIDLNQVIENATLTPHDRIVTFKDLRNDVLQELLEPDQYSGTPVPSLPRFTQIIKGFRRGEMTVLTGPTGAGKTTFLGQVSLDLAEQGENVLWGSFEIKNTRLLHKLMKQFSRDSLPVSTEVNAREKFEALADRFETLPLYFMKFHGGSDMDEVLDAMEYAVYVNDVEHIILDNMQFMITR----NGKKS--SFDKFEVQDLAIEKFRKFATEHNVHVTLVVHPRKEDAAAKLSISSFFGSAKATQEADTVIIIQ 589          
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Match: K3WZ52_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ52_GLOUD)

HSP 1 Score: 546 bits (1408), Expect = 8.570e-184
Identity = 300/590 (50.85%), Postives = 383/590 (64.92%), Query Frame = 1
Query:   10 RLSGAEVVVKQCPFCHDTKNKADNMWKLSIGLKRGGAWICHRCGASGSWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATL--VVP--DQQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYRFPAEEG-YEDAECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGVVVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMAVYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKFVKKLGVRRCLVVRPK----ADDPKPPKDANEALMAGRNLQEFLDGARIRPHDDIVTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPTGSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFAGKPAADLRRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHIILDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALVIHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ 1752
            R +    VV+ CPFCH T  KADN++KL +  K  G + CHRCGASGSW+D K +  +  A  +  M   +           GG++ ++ A L  V+   D  +      NL+    F  V  YL+  R    G++  VL KYGVG     F  + G  E ++CI+FPW+  + DL +  V       ++   N  +     V+R+K RAV++K +QRL P GG WG+FG +TVP  +  +V+TEGEFDAMAVYQATG+PA+SLPNG  SLP  VLPLLERF+KIYLWMD+DA GQA VEKF  K+GV RC +VRP     A   KP KDAN+AL+AG +L   +  A   PH  I TF +LR +V  E  NP    G   R+ P L R++KG R GE+TV+TGPTG GKTT+LSQLS+DL   GV+TLWGSFE+KNTRLMHKML Q AG+    L+    A  + AD+F++LP+ FMRF G TDVD+VLDAM+Y VYAYDVQHI+LDN+QFM+     G GR     FDKF+ QD ALDKFRKFA+++NVH+ LVIHPRKE E   LT +S+FG+AKATQEAD V+ILQ
Sbjct:   38 RETDTHFVVRDCPFCHPTHGKADNIFKLYV-QKAQGVYKCHRCGASGSWFDFKSKLQSNIAVNS--MEGVMH---------GGGASSIAEAMLPKVIQALDNAKAMAIQQNLLEEPEFQSVLRYLTETR----GIKKEVLQKYGVGAIEQPFRNDVGDLETSKCISFPWMARQQDLDAMGVICDSETPQSGDKNLFN-----VIRLKIRAVDDKAKQRLVPKGGSWGLFGWNTVPTASDEIVITEGEFDAMAVYQATGMPAISLPNGCQSLPPSVLPLLERFKKIYLWMDNDASGQANVEKFSSKIGVTRCYIVRPSPPVGAQRTKPIKDANDALLAGLDLGAIVRAAERIPHSQITTFDELRREVYEEILNPLRACGVQSRTLPSLNRLLKGHRMGEVTVLTGPTGCGKTTLLSQLSIDLCGQGVSTLWGSFEIKNTRLMHKMLNQLAGR---SLQGDINAFESAADKFEALPMYFMRFFGSTDVDEVLDAMEYAVYAYDVQHILLDNIQFMMA----GQGR----GFDKFERQDAALDKFRKFASQKNVHLTLVIHPRKEQEDVDLTLTSVFGTAKATQEADNVLILQ 595          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15947.3448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G467_ECTSI2.910e-30771.16Mitochondrial helicase twinkle n=2 Tax=Ectocarpus ... [more]
A0A835ZLV9_9STRA1.530e-24559.83Mitochondrial helicase twinkle n=1 Tax=Tribonema m... [more]
A0A8K1FKX8_PYTOL1.180e-19653.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C4T1_PYTIN6.350e-18952.68Twinkle protein putative n=1 Tax=Pythium insidiosu... [more]
A0A5D6XVL9_9STRA1.120e-18750.68Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2WTT8_9STRA4.920e-18751.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8LE42_THAPS7.460e-18749.17Predicted protein n=2 Tax=Thalassiosira pseudonana... [more]
A0A1Z5K003_FISSO4.050e-18548.92SF4 helicase domain-containing protein n=2 Tax=Fis... [more]
A0A1E7FNP2_9STRA2.930e-18449.75p-loop containing nucleoside triphosphate hydrolas... [more]
K3WZ52_GLOUD8.570e-18450.85Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15947contigH-paniculata_contig15947:143..5444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score854.7
Seed ortholog evalue2.4e-245
Seed eggNOG ortholog2880.D7G467
Preferred nameC10orf2
KEGG koko:K17680
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000959,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006268,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018130,GO:0019438,GO:0019899,GO:0022607,GO:0031974,GO:0032042,GO:0032392,GO:0032508,GO:0032774,GO:0034214,GO:0034641,GO:0034645,GO:0034654,GO:0042645,GO:0043139,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0051259,GO:0051260,GO:0051276,GO:0051536,GO:0051537,GO:0051540,GO:0065003,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:0140053,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.mitochondrial DNA replication
EggNOG OGsKOG2373@1,KOG2373@2759
Ec32 ortholog descriptionmitochondrial helicase twinkle
Ec32 orthologEc-02_001460.1
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons10
Model size1752
Cds size1752
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15947.3448.1prot_H-paniculata_contig15947.3448.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15947 143..5444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.0228848-CDS-H-paniculata_contig15947:142..3071622929274.0228848-CDS-H-paniculata_contig15947:142..307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 143..307 -
1691480796.2062542-CDS-H-paniculata_contig15947:142..3071691480796.2062542-CDS-H-paniculata_contig15947:142..307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 143..307 -
1622929274.044367-CDS-H-paniculata_contig15947:606..8381622929274.044367-CDS-H-paniculata_contig15947:606..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 607..838 -
1691480796.2174904-CDS-H-paniculata_contig15947:606..8381691480796.2174904-CDS-H-paniculata_contig15947:606..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 607..838 -
1622929274.062437-CDS-H-paniculata_contig15947:1341..16011622929274.062437-CDS-H-paniculata_contig15947:1341..1601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 1342..1601 -
1691480796.224729-CDS-H-paniculata_contig15947:1341..16011691480796.224729-CDS-H-paniculata_contig15947:1341..1601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 1342..1601 -
1622929274.0748699-CDS-H-paniculata_contig15947:1793..18671622929274.0748699-CDS-H-paniculata_contig15947:1793..1867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 1794..1867 -
1691480796.2320414-CDS-H-paniculata_contig15947:1793..18671691480796.2320414-CDS-H-paniculata_contig15947:1793..1867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 1794..1867 -
1622929274.0896952-CDS-H-paniculata_contig15947:2234..23431622929274.0896952-CDS-H-paniculata_contig15947:2234..2343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 2235..2343 -
1691480796.239222-CDS-H-paniculata_contig15947:2234..23431691480796.239222-CDS-H-paniculata_contig15947:2234..2343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 2235..2343 -
1622929274.1123624-CDS-H-paniculata_contig15947:2611..27941622929274.1123624-CDS-H-paniculata_contig15947:2611..2794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 2612..2794 -
1691480796.2464123-CDS-H-paniculata_contig15947:2611..27941691480796.2464123-CDS-H-paniculata_contig15947:2611..2794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 2612..2794 -
1622929274.1258228-CDS-H-paniculata_contig15947:3169..33171622929274.1258228-CDS-H-paniculata_contig15947:3169..3317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 3170..3317 -
1691480796.2536778-CDS-H-paniculata_contig15947:3169..33171691480796.2536778-CDS-H-paniculata_contig15947:3169..3317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 3170..3317 -
1622929274.156972-CDS-H-paniculata_contig15947:3757..38891622929274.156972-CDS-H-paniculata_contig15947:3757..3889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 3758..3889 -
1691480796.2679155-CDS-H-paniculata_contig15947:3757..38891691480796.2679155-CDS-H-paniculata_contig15947:3757..3889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 3758..3889 -
1622929274.181552-CDS-H-paniculata_contig15947:4230..45661622929274.181552-CDS-H-paniculata_contig15947:4230..4566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 4231..4566 -
1691480796.2752225-CDS-H-paniculata_contig15947:4230..45661691480796.2752225-CDS-H-paniculata_contig15947:4230..4566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 4231..4566 -
1622929274.2018564-CDS-H-paniculata_contig15947:5331..54441622929274.2018564-CDS-H-paniculata_contig15947:5331..5444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 5332..5444 -
1691480796.2823124-CDS-H-paniculata_contig15947:5331..54441691480796.2823124-CDS-H-paniculata_contig15947:5331..5444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15947 5332..5444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15947.3448.1

>prot_H-paniculata_contig15947.3448.1 ID=prot_H-paniculata_contig15947.3448.1|Name=mRNA_H-paniculata_contig15947.3448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=584bp
MAFRLSGAEVVVKQCPFCHDTKNKADNMWKLSIGLKRGGAWICHRCGASG
SWYDLKRRTGNGTAAQTSAMPTALQTVRDICESSHGGSNDLSSATLVVPD
QQRVRTYPVNLMSNQRFAHVREYLSGNRPGQRGLQIRVLIKYGVGCALYR
FPAEEGYEDAECITFPWVVNKNDLKSEEVADLDAFMKTKYGNTSSAPDGV
VVRVKARAVNNKRRQRLDPAGGRWGIFGLHTVPDDATAVVVTEGEFDAMA
VYQATGVPAVSLPNGASSLPLGVLPLLERFEKIYLWMDDDAPGQAGVEKF
VKKLGVRRCLVVRPKADDPKPPKDANEALMAGRNLQEFLDGARIRPHDDI
VTFQDLRHDVLHEFQNPQEYVGTALRSFPRLTRIVKGLRGGELTVITGPT
GSGKTTILSQLSLDLAEGGVNTLWGSFEVKNTRLMHKMLQQFAGKPAADL
RRHPEALSAWADRFQSLPLKFMRFHGGTDVDDVLDAMDYTVYAYDVQHII
LDNLQFMLTTGADGSGRRSGGSFDKFDAQDVALDKFRKFATERNVHIALV
IHPRKEDEGHKLTTSSIFGSAKATQEADLVIILQ
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mRNA from alignment at H-paniculata_contig15947:143..5444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15947.3448.1 ID=mRNA_H-paniculata_contig15947.3448.1|Name=mRNA_H-paniculata_contig15947.3448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5302bp|location=Sequence derived from alignment at H-paniculata_contig15947:143..5444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATTTCGGCTATCAGGGGCTGAGGTGGTTGTCAAGCAGTGCCCTTT CTGCCACGACACCAAGAATAAGGCGGACAATATGTGGAAGCTGTCAATTG GCCTTAAGAGAGGGTGAGCTGGTCTACGTAGTCAACTACTGTTCCGATCC CAATCGCCCACCAATTGTATGTACGACACCTAATAGCAGATAGTTGACAA CACGATTAGTGCTGGTGAATTCGCGGTGACTAATAGTGAAGGGTACTCTT GGCACATGAACTGAATAGCAGATTAACCTTTCTGTACCATATACTTGTAT AGATTAACTTGTGATGTTCATTAGAAATTGCACCACTACTGGCTGTGCAA AATAAAATACAGTGATGGGCGCGATCCATGGGGACCTGGGGAAAGGCAAA ATCATCCGCCTTATAGCGAATCCTGCCTTACTCCTTTATAAAGCGGGCAC AGCCTTATATTGGTTAAAATGACAAAACACGATTGTAAATGATGGTATCA CCCCCACGAATGCGATGCAAGCGTATGGTTGCGAGCAGAGCATCTGAGCA TATGCCCACCTAGGTGTAGCATGTCTTCGCTTTGGTTGAGAGCGTGTTTC TACTTACAAGAGTGTGAGGTTTTGTTTGGGGTGAGTCCCTTTGTTGGCGG CACAATGAAAGATCGTCTTATATGGGGGTAGTGGGCCCTAAAAAAGGTGG GTTATGCTGTACAATAGGAAACCCTCCTTATACAGCAAACAATTGGGACA CGCCAAAATCACCCACCTTACATCGGGTCCTCTTATCATATGTAACTATT CTCTCAATGTTGGAACTCTACTAGGCGTTTCTGATGTACCGTCGCAACGG TCCTTCGCCTTGTTTTGATGAAGCCCAGGGGTGCATGGATATGCCATCGA TGTGGTGCGTCTGGCTCCTGGTACGACCTGAAGCGAAGGACTGGGAATGG GACTGCAGCGCAAACATCTGCAATGCCAACTGCCTTGCAGACGGTCAGAG ATATCTGTGAATCATCACATGGCGGGAGCAATGATTTGTCGTCTGCAACA CTAGTAGTTCCAGACCAGCAGCGGGTACGGACCTACCCAGTAAATCTCAT GTCCAACCAACGGTTTGCCCATGTGCGGGAATACCTGTCTGGAAATCGGC CAGGACAGCGTGGACTCCAAATCAGAGTGCTGATAAAGTATGGTGTCGGA TGTGCGTTGTACCGGTGAGATGCAGAGTCATTCACCTCAAAGGAGTCAAG CAGAGATTTGTCCATGGTAGTACGCCATGAACAGGTTGGATCATTCAAGG ATGCGTCTTCCATGGACGATTTCGTCGAAAATTGCTTAGATGCATCCCAC AAGCCACACCCAAACGTGCCGTGCAGACTGCAAAGTACTGTACTTTCGTC GAGGCGAAGACGCGTGTCAGCACACTACACTTCATCTCCCTGTGAATTGT CCAACCCGGGCAAAAAAGCTCTTCTGAACAAGTATGCGCTTGATCGTGTG ATGTCCGTGCCTGTGTTCACATATGTATTTGCTCGCGGTTCTGTTCTGGC CTAAGATTTCCCGCCGAGGAAGGCTACGAGGATGCTGAATGCATTACCTT TCCGTGGGTGGTGAACAAAAATGATCTGAAGTCAGAGGAAGTTGCTGACT TGGATGCCTTCATGAAGACCAAGTACGGGAACACATCGTGAGTAGTGCTA CGGCATCTCAATTGCCACGTTGTGTCCGTGTCGCTTAGTAGACATAGTTG TCGTTACTTTGCTCCGTTGCTGGGGAGGGAACATATTTCGTCAATTCCTG TGATACGAACTGTGCGATTCCCTCAACCAGCTCGTACCATGGCCAAGCAC ATCATGCCTTTAGTTCGGACGTGAGCGTTTCGTGTTTCTAGCTGTGTCTG TAGTTTGGTCAAACTTACAGGAAGATCGATCGTGGCGTCCTTGGCAATGC ATCCTGAACTTTTACCTACGGCGTGCGATTTCATGCGGGGCATCTCTCCC GGCTATAGGAAGAATATATTATTATTTCATCTCCGCGAAGCTCGGTAGAC AACGGTGAACTACATGCCATGCGTGTACGGTAGGATTTCCTGGATATGTT TCACACTTCACACCCATGCCGTAGCAGGTCCGCTCCCGACGGCGTCGTAG TCCGTGTCAAGGCTCGCGCAGTCAACAATAAGCGGCGACAGAGGCTAGAT CCTGCTGGGGGGCGCTGGGGGATATTTGGGCTACACACTGTACCTGATGA TGCCACTGCCGTTGTGGTGACTGAGGTGGGCATAAGCTGAGGATGTCAGT GTGCGTGTGTCTATGCGTTTATTATATAGAATTCCAGCTCTTGAACGGTC ATGGTGCCTCCACTACCCTGTAGTGCAACGCTGTTATGATGGCGTCGCAG CGTGCGAGGTAGCGAAGGCAGTGGAAAGATGATGCTCTCGGGCGTCGCTA CGTGCAGGCGTTCTAATTGAAAGTTACAACCAGAGACGACCAATTTGCAT CGTGGGAAGGTAACGTGGTAGGTTATGCCTCCTACAACGTGTCCTCCGCT CATCTCCGAGTTTGTCTGGTCGCAGCACTGGCACGACTTTCATTTTACCT CCTGCACCTGCACTGCTATATTCATATATCGTCGCCTTTATGACAAATAG GGAGAGTTCGATGCAATGGCGGTTTATCAAGCAACTGGCGTTCCCGCCGT CTCCTTGCCCAATGGGGCAAGTTCGCTGCCGCTTGGGGTCCTTCCTCTGC TGGAGCGCTTCGAGAAGATCTATCTTTGGATGGATGACGACGCTCCGGGG CAAGCGGGCGTCGAAAAGTTTGTAAAGAAGTTGGTGAGGAGGAAGGGCGT TGTTCAAGAGTTTGTTGCTCCAGGAATACATTTATTATATTCGGTCGTGA ATTGAGGGCACAATGCCATAGTCGAAATGTTTATGAGTTTCATAAGAGTG CACCAATAATAGAGCGATACAAGTAGTCGACCCTCGAATACTCCAACGTC GAAACTGCTGATTTTCTCATGTTTCTTTACATGCATGCGTAACTGCTGGA TCCGAAGTTATGCCGCTCGTTTCGCCCTCGTACGACTATCCACATCGCCA GGGTGTCAGGCGATGCTTGGTGGTACGGCCAAAGGCGGACGACCCTAAGC CACCAAAGGACGCCAACGAAGCCCTTATGGCCGGAAGAAATCTTCAGGAA TTCCTTGATGGTGAAGCTCCTGAGAGAATAGGCAATGTACGCACTTTCGG TTCTAGGGCTTACAAAACGTTGTACGAGGGGCACAGGGCATACCTGTTCG CTTCCAGCCGCCCAATGAGCCGACTGTTTTGGAAGGCAGTGCAGCGTGAT GCTCGCGATCCGTCCCTGTACTGCTGTTGCTCTTCTATTGGGAATTGTTG GCACTCACAATATGCCCGCAAGAGTTCTTGCAAGCTTTGTTGCAGAGCCA CCCCTGTTAGCTAGCTGATGTAGATGGACTGTGTGAGAACCTGCAATTCA CTTGTTTTGTGACCACATATTCTCTCCAACGTATTGAATGTTGTTATTTC TTGTTTTGCTTCGCTGCCAACTGACAGGAGCGAGAATCCGTCCCCACGAT GATATTGTGACTTTCCAAGATCTTCGCCACGATGTCCTTCACGAGTTTCA GGTACATTTTCGTTCGTGTAGTCTGTGCCCAGAATTGAAATTGCTTTTAT TTCCTGTTCAAAACTGAGGTTATGATGTGTTGAACGTTTTATCGCAATTC GCAATACCATACTAGTTTTATGATAGTTTTGTATCACTGCTGATGTGTTG ATCATGAGCCTTCTACGTTTCTATTTCGCGGCGGCTTGTACAGAATCCGC AGGAATACGTTGGAACAGCGCTTAGGTCATTCCCTCGGTTGACAAGAATT GTCAAAGGTCTGAGGGGGGGTGAGCTCACGGTCATCACTGGCCCGACCGG CTCCGGAAAGACAACGATTTTGAGTCAGCTCTCACTTGATCTCGCCGAGG GAGGCGTAAACACGCTCTGGGGGAGCTTCGAAGTCAAGAACACGCGTTTG ATGCACAAGATGCTGCAGCAGTTCGCCGGGAAACCTGCGGCCGATCTTCG AAGGTGACGCCACACAAAAAGTATTCACCCCCCGGACAAATACGAATGGA GCATTCGCAACTATCTCGAAGTATCATTTTTTGTATTGGGTAGACATATT TATTCGTTCACAGGTCTATGATTGGTCACTCTACAGGTGGTCACCAGGTG GTCGTATACCCGACGAACAGTCACACATGCAGGTTCTGTTTGTTTTCCAG ATGCTACTGTATAGATTGAATGCTCTATCTGCCCGAGCTTTTCGATGCTC CATGGTATATCGAGTATACCGCATATTATTCGCGTCACATGGACATCTTC CCCAACTCAAACAGATACATTCGTATTTGTCCCGGGCGTGCAAGTATTAC AGTCTGGCTGCAGTAGGTTTCCCCGCTATAAACTTACATTCGAAATACCT TGTACTATCGTCACACACCATGTTGCTGCACTCCACCCTATTTTTCAGAT CAAAAATCGGTTGGAACACATTTCAATGCTTTTCCCCCCATGCATTCTTG CTGTAGACATCCGGAGGCCCTATCGGCATGGGCGGATCGATTTCAGTCTC TGCCACTGAAATTCATGCGATTCCACGGAGGAACAGATGTTGATGACGTG CTGGATGCCATGGATTACACAGTGTACGCCTACGACGTGCAGCACATCAT CCTTGACAATTTGCAGTTCATGCTCACGACCGGAGCGGACGGCAGTGGCA GGCGTTCCGGCGGGTCGTTTGACAAGTTTGACGCGCAGGTGTGTGGCTGG AAATTGGGGACATTTCTCACCTATCTTCTGTGTTGAACATGGCATGAACT GCGCGGGCTCGGCCATTGCTCGTGCGCCAGCGACAAATTGACAACATGCG ATGTATCGAGATACTAGGTTATTTTGTTACTTTCGTTGACACTCGACGTA GTTAAAATCCACACGTCCAATCAATATGCCCGTTTACATCTGAAGAGAGT GGCAGCAGTACTGGGGTTGCCGTGTGCCTCGTGACCTCCCCCTGGCTAAT AACACAGCTAATGTTCAACGTTTGGCTCTTCCTCTAGGATGTGGCCTTGG ACAAATTTCGTAAATTCGCCACGGAAAGGAATGTGCATATCGCACTCGTC ATTCATCCAAGAAAAGAGGATGAAGGTCATAAGCTCACCACCAGTTCCAT TTTCGGCTCAGCCAAAGCGACTCAAGAGGCCGACTTGGTAATTATTTTGC AG
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Coding sequence (CDS) from alignment at H-paniculata_contig15947:143..5444-

>mRNA_H-paniculata_contig15947.3448.1 ID=mRNA_H-paniculata_contig15947.3448.1|Name=mRNA_H-paniculata_contig15947.3448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3504bp|location=Sequence derived from alignment at H-paniculata_contig15947:143..5444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATTTCGGCTATCAGGGGCTGAGGTGGTTGTCAAGCAGTGCCCTTT
CTGCCACGACACCAAGAATAAGGCGGACAATATGTGGAAGCTGTCAATTG
GCCTTAAGAGAGGATGGCATTTCGGCTATCAGGGGCTGAGGTGGTTGTCA
AGCAGTGCCCTTTCTGCCACGACACCAAGAATAAGGCGGACAATATGTGG
AAGCTGTCAATTGGCCTTAAGAGAGGGGGTGCATGGATATGCCATCGATG
TGGTGCGTCTGGCTCCTGGTACGACCTGAAGCGAAGGACTGGGAATGGGA
CTGCAGCGCAAACATCTGCAATGCCAACTGCCTTGCAGACGGTCAGAGAT
ATCTGTGAATCATCACATGGCGGGAGCAATGATTTGTCGTCTGCAACACT
AGTAGTTCCAGACCAGCAGCGGGTACGGACCTACCCAGTAAATCTCATGT
CCAACCAACGGTTTGCCCATGTGCGGGAATACCTGTCTGGAAATCGGCCA
GGACAGCGTGGACTCCAAATCAGAGTGCTGATAAAGTATGGTGTCGGATG
TGCGTTGTACCGGGGTGCATGGATATGCCATCGATGTGGTGCGTCTGGCT
CCTGGTACGACCTGAAGCGAAGGACTGGGAATGGGACTGCAGCGCAAACA
TCTGCAATGCCAACTGCCTTGCAGACGGTCAGAGATATCTGTGAATCATC
ACATGGCGGGAGCAATGATTTGTCGTCTGCAACACTAGTAGTTCCAGACC
AGCAGCGGGTACGGACCTACCCAGTAAATCTCATGTCCAACCAACGGTTT
GCCCATGTGCGGGAATACCTGTCTGGAAATCGGCCAGGACAGCGTGGACT
CCAAATCAGAGTGCTGATAAAGTATGGTGTCGGATGTGCGTTGTACCGAT
TTCCCGCCGAGGAAGGCTACGAGGATGCTGAATGCATTACCTTTCCGTGG
GTGGTGAACAAAAATGATCTGAAGTCAGAGGAAGTTGCTGACTTGGATGC
CTTCATGAAGACCAAGTACGGGAACACATCATTTCCCGCCGAGGAAGGCT
ACGAGGATGCTGAATGCATTACCTTTCCGTGGGTGGTGAACAAAAATGAT
CTGAAGTCAGAGGAAGTTGCTGACTTGGATGCCTTCATGAAGACCAAGTA
CGGGAACACATCGTCCGCTCCCGACGGCGTCGTAGTCCGTGTCAAGGCTC
GCGCAGTCAACAATAAGCGGCGACAGAGGCTAGATCCTGCTGGGGGGCGC
TGGGGGATATTTGGGCTACACACTGTACCTGATGATGCCACTGCCGTTGT
GGTGACTGAGGTCCGCTCCCGACGGCGTCGTAGTCCGTGTCAAGGCTCGC
GCAGTCAACAATAAGCGGCGACAGAGGCTAGATCCTGCTGGGGGGCGCTG
GGGGATATTTGGGCTACACACTGTACCTGATGATGCCACTGCCGTTGTGG
TGACTGAGGGAGAGTTCGATGCAATGGCGGTTTATCAAGCAACTGGCGTT
CCCGCCGTCTCCTTGCCCAATGGGGCAAGTTCGCTGCCGCTTGGGGTCCT
TCCTCTGCTGGAGCGCTTCGAGAAGATCTATCTTTGGATGGATGACGACG
CTCCGGGGCAAGCGGGCGTCGAAAAGTTTGTAAAGAAGTTGGGAGAGTTC
GATGCAATGGCGGTTTATCAAGCAACTGGCGTTCCCGCCGTCTCCTTGCC
CAATGGGGCAAGTTCGCTGCCGCTTGGGGTCCTTCCTCTGCTGGAGCGCT
TCGAGAAGATCTATCTTTGGATGGATGACGACGCTCCGGGGCAAGCGGGC
GTCGAAAAGTTTGTAAAGAAGTTGGGTGTCAGGCGATGCTTGGTGGTACG
GCCAAAGGCGGACGACCCTAAGCCACCAAAGGACGCCAACGAAGCCCTTA
TGGCCGGAAGAAATCTTCAGGAATTCCTTGATGGGTGTCAGGCGATGCTT
GGTGGTACGGCCAAAGGCGGACGACCCTAAGCCACCAAAGGACGCCAACG
AAGCCCTTATGGCCGGAAGAAATCTTCAGGAATTCCTTGATGGAGCGAGA
ATCCGTCCCCACGATGATATTGTGACTTTCCAAGATCTTCGCCACGATGT
CCTTCACGAGTTTCAGGAGCGAGAATCCGTCCCCACGATGATATTGTGAC
TTTCCAAGATCTTCGCCACGATGTCCTTCACGAGTTTCAGAATCCGCAGG
AATACGTTGGAACAGCGCTTAGGTCATTCCCTCGGTTGACAAGAATTGTC
AAAGGTCTGAGGGGGGGTGAGCTCACGGTCATCACTGGCCCGACCGGCTC
CGGAAAGACAACGATTTTGAGTCAGCTCTCACTTGATCTCGCCGAGGGAG
GCGTAAACACGCTCTGGGGGAGCTTCGAAGTCAAGAACACGCGTTTGATG
CACAAGATGCTGCAGCAGTTCGCCGGGAAACCTGCGGCCGATCTTCGAAG
AATCCGCAGGAATACGTTGGAACAGCGCTTAGGTCATTCCCTCGGTTGAC
AAGAATTGTCAAAGGTCTGAGGGGGGGTGAGCTCACGGTCATCACTGGCC
CGACCGGCTCCGGAAAGACAACGATTTTGAGTCAGCTCTCACTTGATCTC
GCCGAGGGAGGCGTAAACACGCTCTGGGGGAGCTTCGAAGTCAAGAACAC
GCGTTTGATGCACAAGATGCTGCAGCAGTTCGCCGGGAAACCTGCGGCCG
ATCTTCGAAGACATCCGGAGGCCCTATCGGCATGGGCGGATCGATTTCAG
TCTCTGCCACTGAAATTCATGCGATTCCACGGAGGAACAGATGTTGATGA
CGTGCTGGATGCCATGGATTACACAGTGTACGCCTACGACGTGCAGCACA
TCATCCTTGACAATTTGCAGTTCATGCTCACGACCGGAGCGGACGGCAGT
GGCAGGCGTTCCGGCGGGTCGTTTGACAAGTTTGACGCGCAGACATCCGG
AGGCCCTATCGGCATGGGCGGATCGATTTCAGTCTCTGCCACTGAAATTC
ATGCGATTCCACGGAGGAACAGATGTTGATGACGTGCTGGATGCCATGGA
TTACACAGTGTACGCCTACGACGTGCAGCACATCATCCTTGACAATTTGC
AGTTCATGCTCACGACCGGAGCGGACGGCAGTGGCAGGCGTTCCGGCGGG
TCGTTTGACAAGTTTGACGCGCAGGATGTGGCCTTGGACAAATTTCGTAA
ATTCGCCACGGAAAGGAATGTGCATATCGCACTCGTCATTCATCCAAGAA
AAGAGGATGAAGGTCATAAGCTCACCACCAGTTCCATTTTCGGCTCAGCC
AAAGCGACTCAAGAGGCCGACTTGGTAATTATTTTGCAGGATGTGGCCTT
GGACAAATTTCGTAAATTCGCCACGGAAAGGAATGTGCATATCGCACTCG
TCATTCATCCAAGAAAAGAGGATGAAGGTCATAAGCTCACCACCAGTTCC
ATTTTCGGCTCAGCCAAAGCGACTCAAGAGGCCGACTTGGTAATTATTTT
GCAG
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