mRNA_H-paniculata_contig15945.3447.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15945.3447.1
Unique NamemRNA_H-paniculata_contig15945.3447.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: G3G6S3_9PHAE (Tetratricopeptide repeat protein 1 (Fragment) n=21 Tax=Fucaceae TaxID=3010 RepID=G3G6S3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.330e-43
Identity = 75/103 (72.82%), Postives = 89/103 (86.41%), Query Frame = 1
Query:    1 FEAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFKMQQ 309
            F+ VV DCTAALE++P Y+KALLRRAQANE LEKYD+ALED KTL+EIDPN++ A++   RLEKL  +K EKMK+EAIGKLKELGNS+LG+FGLS DNFKM Q
Sbjct:    8 FDDVVVDCTAALEVDPSYMKALLRRAQANEQLEKYDLALEDTKTLVEIDPNLRSAKENMARLEKLQADKTEKMKEEAIGKLKELGNSVLGNFGLSLDNFKMVQ 110          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A6D2KHN4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KHN4_9BRAS)

HSP 1 Score: 121 bits (303), Expect = 1.220e-31
Identity = 63/100 (63.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    1 FEAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFK 300
            +E  V +CT ALELNP Y KAL+RRA+ANE LE ++ AL D+K +LE+DP+   ARKG  RLE L  EK EKMK+EAI KLKE+GNS+LG FG+S DNFK
Sbjct:  166 YEETVKECTKALELNPTYSKALVRRAEANEKLEHFEDALTDLKKILELDPSNDQARKGIRRLEPLAAEKREKMKEEAITKLKEMGNSILGRFGMSVDNFK 265          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A218XR07_PUNGR (tetratricopeptide repeat protein 1-like n=3 Tax=Punica granatum TaxID=22663 RepID=A0A218XR07_PUNGR)

HSP 1 Score: 119 bits (299), Expect = 4.310e-31
Identity = 62/99 (62.63%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    4 EAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFK 300
            E  V +CT ALELNP+YVKALLRRA+A E +E ++ A+ DMK +LE+DP+   ARK   RLE L  EK EKMK+E IGKLKE+G+SLLG FG+S DNFK
Sbjct:  162 EDTVKECTKALELNPKYVKALLRRAEAQEKIENFEEAIADMKKILELDPSNDQARKAIYRLEPLAAEKREKMKEEMIGKLKEMGDSLLGRFGMSVDNFK 260          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A1S3JTY5_LINUN (tetratricopeptide repeat protein 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JTY5_LINUN)

HSP 1 Score: 119 bits (297), Expect = 1.130e-30
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 FEAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFKMQQ 309
            +E  ++DCT ALELNP Y+KALLRRA+  E  EK D ALED K ++E+DP    AR+   RL +  TE+ EKMKDE IGKLKELGN +L  FG+STDNFK+QQ
Sbjct:  171 YEKAIEDCTKALELNPNYLKALLRRAEMYEKTEKLDEALEDYKKVIEMDPTQHTAREACIRLPQQITERNEKMKDEMIGKLKELGNMVLKPFGMSTDNFKLQQ 273          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A1S3KF36_LINUN (tetratricopeptide repeat protein 1-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KF36_LINUN)

HSP 1 Score: 114 bits (286), Expect = 1.550e-30
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    4 EAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFKMQQ 309
            E  ++DCT ALELNP Y+KALLRRA+  E  EK D ALED K ++E+DP    AR+   RL +  TE+ EKMKDE +GKLKELGN +L  FG+STDNFK+ Q
Sbjct:   31 EKAIEDCTKALELNPNYLKALLRRAEMYEKTEKLDEALEDYKKVIEMDPTQHTAREACIRLPQQITERNEKMKDEMMGKLKELGNMVLKPFGMSTDNFKLHQ 132          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A1J7GKS3_LUPAN (Uncharacterized protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A1J7GKS3_LUPAN)

HSP 1 Score: 117 bits (293), Expect = 1.560e-30
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 FEAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFK 300
            +E  + +CT ALELNP YVKAL+RR +A+E LE YD A+ DMK +LE+DP    A+K   RLE L  EK EKMK+E IGKLKE+GNS+LG FG+S DNFK
Sbjct:  127 YEDTIKECTKALELNPVYVKALVRRGEAHEKLEHYDEAIADMKKILEVDPLNDQAKKVIRRLEPLAAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFK 226          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A7S0J1B8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J1B8_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 2.390e-30
Identity = 58/103 (56.31%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 FEAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFKMQQ 309
            +EAV++DCT+AL + P YVKAL+RRAQA E L++   ALEDM+T  ++DP+ K A    PRLE     K+EK KDE +GKLK+LGNS+LG FG+S DNFK ++
Sbjct:  116 YEAVIEDCTSALAIKPEYVKALVRRAQAREELDQPTEALEDMRTAGKLDPDAKAATSAIPRLEAASNAKLEKQKDEMLGKLKDLGNSVLGRFGMSLDNFKAEK 218          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A314Z536_PRUYE (Tetratricopeptide repeat protein 1 isoform X1 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314Z536_PRUYE)

HSP 1 Score: 114 bits (284), Expect = 3.790e-30
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    4 EAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFK 300
            E  + +CT ALELNP Y+KALLRRA+A+E LE ++ A+ DMK +LE+DP+   A+K   RL  L  EK EKMK+E IGKLK++GNSLLG FG+S DNFK
Sbjct:   42 EDAIKECTKALELNPSYMKALLRRAEAHEKLEHFEEAIADMKKILELDPSNDQAKKTIRRLGPLAEEKREKMKEEMIGKLKDMGNSLLGRFGMSVDNFK 140          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A8K0HJN8_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HJN8_9ROSA)

HSP 1 Score: 117 bits (293), Expect = 4.010e-30
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 FEAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFK 300
            +E  + +CT ALELNP Y+KAL+RRA+A+E LE +D A+ DMK + E+DP+   AR+   RL+ L  EK EKMK+E IGKLKE+GNSLLG FG+S DNFK
Sbjct:  169 YEDTIKECTKALELNPSYMKALVRRAEAHEKLEHFDEAISDMKKITELDPSNDQARRAIRRLQPLAEEKREKMKEEMIGKLKEMGNSLLGRFGMSVDNFK 268          
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Match: A0A6P5EAL6_ANACO (tetratricopeptide repeat protein 1-like n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EAL6_ANACO)

HSP 1 Score: 113 bits (282), Expect = 4.070e-30
Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 FEAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDPNMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFK 300
            ++  + +CT ALELNP Y+KALLRRA+A+E LE Y+ A+ DMK ++E++P+   ARK    LE L  EK EKMK+E I KLKE+GNS+LG FG+S DNFK
Sbjct:   19 YDETIKECTKALELNPPYLKALLRRAEAHEKLEHYEEAIADMKKVIELEPSNDQARKSLQHLEPLAAEKREKMKEEMIEKLKEMGNSVLGRFGMSVDNFK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15945.3447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G3G6S3_9PHAE2.330e-4372.82Tetratricopeptide repeat protein 1 (Fragment) n=21... [more]
A0A6D2KHN4_9BRAS1.220e-3163.00Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A218XR07_PUNGR4.310e-3162.63tetratricopeptide repeat protein 1-like n=3 Tax=Pu... [more]
A0A1S3JTY5_LINUN1.130e-3060.19tetratricopeptide repeat protein 1 n=1 Tax=Lingula... [more]
A0A1S3KF36_LINUN1.550e-3058.82tetratricopeptide repeat protein 1-like n=1 Tax=Li... [more]
A0A1J7GKS3_LUPAN1.560e-3061.00Uncharacterized protein n=2 Tax=Lupinus TaxID=3869... [more]
A0A7S0J1B8_9EUKA2.390e-3056.31Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A314Z536_PRUYE3.790e-3059.60Tetratricopeptide repeat protein 1 isoform X1 n=1 ... [more]
A0A8K0HJN8_9ROSA4.010e-3059.00Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A6P5EAL6_ANACO4.070e-3057.00tetratricopeptide repeat protein 1-like n=1 Tax=An... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15945contigH-paniculata_contig15945:507..1510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score124.0
Seed ortholog evalue4e-26
Seed eggNOG ortholog81985.XP_006284287.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tetratricopeptide repeat
EggNOG OGs37PT2@33090,3G9QT@35493,3HW9Q@3699,KOG4234@1,KOG4234@2759
COG Functional cat.S
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons3
Model size309
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15945.3447.1prot_H-paniculata_contig15945.3447.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15945 507..1510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.9470015-CDS-H-paniculata_contig15945:506..6271622929273.9470015-CDS-H-paniculata_contig15945:506..627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15945 507..627 +
1691480796.179627-CDS-H-paniculata_contig15945:506..6271691480796.179627-CDS-H-paniculata_contig15945:506..627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15945 507..627 +
1622929273.9674177-CDS-H-paniculata_contig15945:1003..11171622929273.9674177-CDS-H-paniculata_contig15945:1003..1117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15945 1004..1117 +
1691480796.1892583-CDS-H-paniculata_contig15945:1003..11171691480796.1892583-CDS-H-paniculata_contig15945:1003..1117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15945 1004..1117 +
1622929273.9811404-CDS-H-paniculata_contig15945:1436..15101622929273.9811404-CDS-H-paniculata_contig15945:1436..1510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15945 1437..1510 +
1691480796.1969597-CDS-H-paniculata_contig15945:1436..15101691480796.1969597-CDS-H-paniculata_contig15945:1436..1510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15945 1437..1510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15945.3447.1

>prot_H-paniculata_contig15945.3447.1 ID=prot_H-paniculata_contig15945.3447.1|Name=mRNA_H-paniculata_contig15945.3447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
FEAVVDDCTAALELNPRYVKALLRRAQANESLEKYDMALEDMKTLLEIDP
NMKVARKGAPRLEKLHTEKMEKMKDEAIGKLKELGNSLLGHFGLSTDNFK
MQQ
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mRNA from alignment at H-paniculata_contig15945:507..1510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15945.3447.1 ID=mRNA_H-paniculata_contig15945.3447.1|Name=mRNA_H-paniculata_contig15945.3447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1004bp|location=Sequence derived from alignment at H-paniculata_contig15945:507..1510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGAAGCCGTGGTGGATGACTGCACGGCTGCGCTGGAGCTGAACCCTCG ATACGTCAAGGCGCTGTTACGACGAGCACAGGCGAATGAGAGCCTGGAGA AGTATGACATGGCTTTAGAAGGTGAATTTAAATACTTGAAGTATATCCAA ATCACCTAGTAACCCATCCATCGCGGCAATGTTTTTTCGAGGTGTCTGTT TGATCAATTGCATTTGTTTCGTACGAAACGATTCAAAACGATACGCAAAC CTCGTGGTGCATGCCAGCTTGAAGTTCGGTGAAGATTCGGTTTCTACTTT CAGCGATGTTGATTTTCTATTGCTTTCCGTTTACCCAAGTGCATACAAGC CTTTGCTGGTATATGACAGCGAAGCATGAAATGTTCCAGGGTGTCATGCA TGGACTGTGACGGTGTTTTCACGTTTCGTTACAATCTATGGCACATCGTT AGTGATTGTCCCATCTATTCCGGGGAACATGCCACCGTGTCGGGCAGATA TGAAAACCTTGCTGGAGATCGATCCGAACATGAAAGTAGCGAGGAAAGGT GCGCCGCGATTGGAGAAACTGCACACCGAGAAGATGGAGAAAATGAAGGA CGAGGCAATTGGTGAGCACTCCACCTACTGTAGGATGTGCCATGCATGTG GTCAGATTGAACAATCTTATCCCTCACTAACAGCACGAGCCAGACGTTGG CTGTGCCAAGTTTCGTTGTTTTTCTCAACGAAGTTGCACCTCTATACTTG CCGATCCAGGACTCGACATGATATATGGGATGGGTAATATTCAGCACCCT TGATCCATGTGTACGTGACGAGATTCACTTATGAAACGAAAATCAAGTTT TGTTCGGCGCTACACGCTAGCTGAGGACTCGTCTTATTCCCTCGCGTTCT CCGCTGTCGGTATGGTATTTTATACTCCAGGTAAGCTCAAGGAGCTCGGG AATTCTTTGCTGGGACATTTCGGGCTGAGTACGGATAACTTCAAGATGCA GCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15945:507..1510+

>mRNA_H-paniculata_contig15945.3447.1 ID=mRNA_H-paniculata_contig15945.3447.1|Name=mRNA_H-paniculata_contig15945.3447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig15945:507..1510+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGAAGCCGTGGTGGATGACTGCACGGCTGCGCTGGAGCTGAACCCTCG
ATACGTCAAGGCGCTGTTACGACGAGCACAGGCGAATGAGAGCCTGGAGA
AGTATGACATGGCTTTAGAAGTTCGAAGCCGTGGTGGATGACTGCACGGC
TGCGCTGGAGCTGAACCCTCGATACGTCAAGGCGCTGTTACGACGAGCAC
AGGCGAATGAGAGCCTGGAGAAGTATGACATGGCTTTAGAAGATATGAAA
ACCTTGCTGGAGATCGATCCGAACATGAAAGTAGCGAGGAAAGGTGCGCC
GCGATTGGAGAAACTGCACACCGAGAAGATGGAGAAAATGAAGGACGAGG
CAATTGATATGAAAACCTTGCTGGAGATCGATCCGAACATGAAAGTAGCG
AGGAAAGGTGCGCCGCGATTGGAGAAACTGCACACCGAGAAGATGGAGAA
AATGAAGGACGAGGCAATTGGTAAGCTCAAGGAGCTCGGGAATTCTTTGC
TGGGACATTTCGGGCTGAGTACGGATAACTTCAAGATGCAGCAGGTAAGC
TCAAGGAGCTCGGGAATTCTTTGCTGGGACATTTCGGGCTGAGTACGGAT
AACTTCAAGATGCAGCAG
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