mRNA_H-paniculata_contig15942.3446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15942.3446.1
Unique NamemRNA_H-paniculata_contig15942.3446.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15942.3446.1 vs. uniprot
Match: D8LC29_ECTSI (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC29_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 2.490e-62
Identity = 96/147 (65.31%), Postives = 121/147 (82.31%), Query Frame = 1 
Query:    1 RWENTKVVLNHPNLRGLQHVRIRDPPARSRFWRWHISGDGHICTAEATYFMLKEFEAVSGVSTEGGRLEDMMFLFALVHSRIKEAYANEPAKAGQLEPSSEAAKRRRRARSIKLDKLVKAKYKGLEEVRAREGDEVAVEEFCRRRRG 441
            RW NT  V+ HP L+GL+HVRIR+PPA S+FWRWH  G+GHICTAEATY +LK+FE  +G+ T GGRLED++FLFAL+ SRIK AY ++P+K G+  PSSE AK+RRR R ++LD+LVKAKYKGL+ +R R+GDE A+EEF RRRRG
Sbjct:  147 RWVNTGAVVGHPKLKGLRHVRIREPPAVSQFWRWHTEGEGHICTAEATYLVLKDFEEATGLVTRGGRLEDILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRVRLVQLDRLVKAKYKGLDALRERDGDEAAIEEFFRRRRG 293
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BLAST of mRNA_H-paniculata_contig15942.3446.1 vs. uniprot
Match: A0A484EFL7_BRELC (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFL7_BRELC)

HSP 1 Score: 83.2 bits (204), Expect = 5.160e-16
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:    4 WENTKVVLNHPNLRGLQHVRIRDPPARSRFWRWHISGDGHICTAEATYFMLKEFEAVS-------GVSTEGGRLEDMMFLFALVHSRIKEAYANEPAKAGQLEPSSEAAKRRRR 324
            W+   V++NHP+L  L+HVR+  PP  S FWR+H +G G + T EA   ML+E+ AV+        V +E  +L D++F F L   RI + + N  A   +  P   A K RRR
Sbjct:  129 WQKAPVIMNHPSLANLRHVRLSQPPKESNFWRYHKAGAGCVSTIEAIKLMLEEYTAVAKTANIETAVGSENTQLSDLLFFFKLQFLRIVDHF-NHEADPDRKPPMDAAEKERRR 241
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BLAST of mRNA_H-paniculata_contig15942.3446.1 vs. uniprot
Match: R7QI40_CHOCR (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI40_CHOCR)

HSP 1 Score: 53.9 bits (128), Expect = 1.490e-5
Identity = 30/104 (28.85%), Postives = 49/104 (47.12%), Query Frame = 1 
Query:    4 WENTKVVLNHPNLRGLQHVRIRDPPAR-SRFWRWHISGDGH------------ICTAEATYFMLKEFEAVSGVSTEGGRLEDMMFLFALVHSRIKEAYANEPAK 276
            W  + +++  P LRGL HV +  P  R +RFWR+      H            + T E+ +     +    G+    G  +D+++LFA +H R++E Y N P K
Sbjct:  160 WTKSVLLMRDPCLRGLPHVSL--PAGRGTRFWRYAPKRSEHSEYFNPDKVGSLLSTVESVHRFCDSYNQAKGIGP--GACDDLLWLFAFLHGRVREVYENAPGK 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15942.3446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC29_ECTSI2.490e-6265.31tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
A0A484EFL7_BRELC5.160e-1638.60tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
R7QI40_CHOCR1.490e-528.85tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15942contigH-paniculata_contig15942:14..3279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.1
Seed ortholog evalue4.6e-50
Seed eggNOG ortholog2880.D8LC29
Preferred nameDTWD1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DTW
EggNOG OGsKOG3795@1,KOG3795@2759
Ec32 ortholog descriptionDTW
Ec32 orthologEc-20_004220.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size462
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15942.3446.1prot_H-paniculata_contig15942.3446.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15942 14..3279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.85494-CDS-H-paniculata_contig15942:13..1601622929273.85494-CDS-H-paniculata_contig15942:13..160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15942 14..160 -
1691480796.1369503-CDS-H-paniculata_contig15942:13..1601691480796.1369503-CDS-H-paniculata_contig15942:13..160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15942 14..160 -
1622929273.8743777-CDS-H-paniculata_contig15942:1674..17401622929273.8743777-CDS-H-paniculata_contig15942:1674..1740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15942 1675..1740 -
1691480796.1522639-CDS-H-paniculata_contig15942:1674..17401691480796.1522639-CDS-H-paniculata_contig15942:1674..1740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15942 1675..1740 -
1622929273.8876796-CDS-H-paniculata_contig15942:2410..25201622929273.8876796-CDS-H-paniculata_contig15942:2410..2520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15942 2411..2520 -
1691480796.1610746-CDS-H-paniculata_contig15942:2410..25201691480796.1610746-CDS-H-paniculata_contig15942:2410..2520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15942 2411..2520 -
1622929273.8990014-CDS-H-paniculata_contig15942:3140..32791622929273.8990014-CDS-H-paniculata_contig15942:3140..3279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15942 3141..3279 -
1691480796.1711066-CDS-H-paniculata_contig15942:3140..32791691480796.1711066-CDS-H-paniculata_contig15942:3140..3279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15942 3141..3279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15942.3446.1

>prot_H-paniculata_contig15942.3446.1 ID=prot_H-paniculata_contig15942.3446.1|Name=mRNA_H-paniculata_contig15942.3446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
RWENTKVVLNHPNLRGLQHVRIRDPPARSRFWRWHISGDGHICTAEATYF
MLKEFEAVSGVSTEGGRLEDMMFLFALVHSRIKEAYANEPAKAGQLEPSS
EAAKRRRRARSIKLDKLVKAKYKGLEEVRAREGDEVAVEEFCRRRRGSRW
GSW*
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mRNA from alignment at H-paniculata_contig15942:14..3279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15942.3446.1 ID=mRNA_H-paniculata_contig15942.3446.1|Name=mRNA_H-paniculata_contig15942.3446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3266bp|location=Sequence derived from alignment at H-paniculata_contig15942:14..3279- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGGAAAACACCAAGGTCGTTTTGAATCACCCGAACCTCAGAGGACT
CCAGCACGTGCGCATCCGTGACCCACCGGCCCGCAGCCGCTTTTGGAGGT
GGCACATCTCCGGAGATGGGCATATTTGCACCGCGGAAGGTGCTAGCAAT
AGTAACATTAGAGCATGGGTCGCGTTGTTTTAGGCTGGGGGTGTTCTATC
GTCGTTACGGTATAGCAGTGCCATATAACCGCGATCACGAGCACACCGCA
CTCTCTTGGCAGGAGGTACATCCCGCGGGTACGGCAGCGAGTGTAGCGCA
ACACCTCTGCTGTAAATATAATCATGTTGTACGTCTCGAGCGTGAGAAGC
ACGTTCGGGTTCTGGCAGCATTTCGAGTATGTCGTGCATGACAATCATTT
TGGCCCTTTGATACAAATGCTTGCAAATTTGTGCTTGGAAAGTTGATCCA
AGTGAGAAGTCTATCATAAAGCGGTTACCAATTCGCGTCGTAGATAAAGT
TAATATGTACTGATTGCAATTCAACTGACTAACATAAAGTGCTGTTGTTG
TTGTTGTTGATGATGATGATGATGATGTCGTTGTCGCCGACAAATTGTGA
CACACAACTATGACAAAAAGCACCGAACACATGCCCAGTGCACGATCGTT
CACCTACCGTAGCTCCCTTCGCTCCCATGTCGTGATTCACCAAACAAAAC
CTATAGAGCAATTTGATTCGAAGTACTTGTTTTTCCCTTTCTGCTTTCGC
TCTTGTCAGCGACCTACTTCATGCTGAAGGAGTTCGAAGCCGTGTCCGGC
GTTTCGACGGAGGGTGGACGGTTAGAAGACATGATGTTCCTCTTTGCTCT
CGTGCACTCCAGAATAAAGGTGCCTCGTGTGTCTGGTATGTCGGCATCAT
GTATGACCATTTTTCTCAATCCTTGAAGAACGTATTCATCAATAATTTCG
CCGTCAAATGGTTATTTTCTATCAAGCAAGCTGCTGAAAATAGGCGACAC
TCGCACCCAGTCGTAGATAATGACACCTAGTGGTGTGCCCAATCCGCATA
TCAACCGTTCCATTACGTCGCTGTATTGTTTGCTACTCTGTTCGAAATAC
AGGATACCAGGGAAAATACGACGATTGGGGTTATAATGTGGTTCTCGTTG
TGCAAGGGTTCATCGATTGTGGAAACTGGAGAGGAACTCTCTCCGAGTGC
AATCGCGAACCCGAAAAAATGAATTATGTGGCCAGTTCCTCGTCGAATCA
AGTCCATGAGACACGCATTGAGAGATGCTACCCTGCAGCCGTATGCGCGT
ATCGAATATTTGGTACACTAAGGCTATGGTGACGATCATTTCGGCATATA
TTTCCAAGTATCCACTGGAGTAACATCCAAGACCGAATCTTGATGGACGC
CATGTCTACGAAAATACCGATCACGTGCACAGTTTTGGCTGTGCAATATT
ACTCAGCAGAAAAAATCATTGAGTTGTACTCCTGCCGCTGCTGCGGCCAC
CGCAGGAACCAACTCCTTTCTACTGCGCCTTGTGCACAGGAGGCGTACGC
GAATGAGCCTGCGAAGGCGGGCCAACTGGAGCCTTCCTCCGAGGCGGCCA
AAAGGGTGAGAGAGAGTGGTATAACGATACTGTTCTAGGCGGGGTTAGGG
GGGTAGGGATTACTTTCCACAAACTGACCAAACCAGGGGGACTGGGGAGA
CTTTACGCCCGGAAAATTCCCCGAGAATAGGGGAAACTTCCCCCCCCTTC
CCCCCCCCCCCGGCGGAATATTATTGCGCTGTTCCATATCCAACATTGTA
GGGCACCACTTTAGTTGGTGTGGTGACAGATATTCGGACCAGTGCACCTT
GTAGGGAGTGCTATGATGGAAAACACCGAGGTGCCCTCCATGGAGCGCGC
GTGGCAATTGGCCAATGTCCCCCCCCCACCTGTATTGTTGCCTGACTCGA
GATTGCGCCATTTATTTCATTTTATCCATTTAATATATTCCAATCGCTGA
GACCGCCGGTCAGAGAACACGTTTTATGCGAGCGAAACCGTACAGGGAAA
GTGAACTCGTCAATGCTCCTCCTCCTCTGGTGATTAGTGCAGCTCGCAGA
TCCACTGTTAAACAACATAACCTTACTAGTAGTGTGTAGTGATGTTTCCC
GAAGGATGAGATTGGGGGTATGACTTCTTTTTCGCCTGAATGATGGAGCG
ACATTGCATCATACTCGTGCTCTACTCCTTTGGCGCAAGGGTTGGGCCAT
GGTAACTCGTGCTACTGTCGTCTCCTTCTGTAATAACTCGTATTGATATA
CGTTTTGTGTGAGCCGTATTAACGTCGATGTGTTATATGCGGTACTCCTG
ATATACGTGCCATACTTCCCAGACTGGGTCCATATCTCTTGAAGGGGGCC
ATGTACGTCCGATATCCTCCAGCGTACATGCATGAGCGCATGGTGCAGAT
CTAAAGACAGGCAGTGAAGGATTAAAATAACCAAGGTGACAGTTCATTTG
GAACGCTTCATGGTGTCGAGGAACCCATTACCACATTCATTCATTTCACC
TGTCGTGCAGAAGGTTTATCGAGTGCAGACTCGAGACTGTACAGTAAGCT
TTTTTCGCCGGGTTTCGTGGCACTTTCTCGGGACATCGCTACTCTTTCAT
TTCGACAGTCCAGTACAGTATCGGCTATGTCCGTCATCTCCCACCCTCAC
CCCGTGCCCTATGGTCCCAACGTGATCAGCACTTCCCTTTATCATGAAGG
ATATCCATTATTTTGATGCACATGAAATAATTAGGTGCTGGTTAAGGTAG
ATCTTGTTGCATGTGTCCATCCCCCGAAGTTTGTTCAAATCTTGACAATG
AGTGTATGTAGCCATGATTTTCGGCTTAATTAAATTACCTCAGCTGGTAC
GTGTAACTCATGGTATTGTCATCGATACAAATTCAGAGGTAGAAAACAGG
TCACATCGGTCAGCACGGGTTCGCAGGCCAGAATAATGTGTATCTGTGTG
AGGCGATGATTTTTTGTTTACGACGTCTACTCACTCCCGCTGCCCGACCT
GACCCGCGCCTCCGCGGTCCCACGACCGGCGTCAATGACATGGCGCGCGC
ACCGATGTTCCATTCACAGCGACGTCGCGCACGAAGCATTAAACTAGACA
AGTTGGTGAAAGCGAAGTACAAGGGACTCGAGGAGGTCAGGGCAAGAGAA
GGGGATGAGGTCGCGGTGGAGGAGTTTTGCAGACGGCGTCGTGGATCGAG
GTGGGGCAGTTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15942:14..3279-

>mRNA_H-paniculata_contig15942.3446.1 ID=mRNA_H-paniculata_contig15942.3446.1|Name=mRNA_H-paniculata_contig15942.3446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig15942:14..3279- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGGAAAACACCAAGGTCGTTTTGAATCACCCGAACCTCAGAGGACT
CCAGCACGTGCGCATCCGTGACCCACCGGCCCGCAGCCGCTTTTGGAGGT
GGCACATCTCCGGAGATGGGCATATTTGCACCGCGGAAGAGGTGGGAAAA
CACCAAGGTCGTTTTGAATCACCCGAACCTCAGAGGACTCCAGCACGTGC
GCATCCGTGACCCACCGGCCCGCAGCCGCTTTTGGAGGTGGCACATCTCC
GGAGATGGGCATATTTGCACCGCGGAAGCGACCTACTTCATGCTGAAGGA
GTTCGAAGCCGTGTCCGGCGTTTCGACGGAGGGTGGACGGTTAGAAGACA
TGATGTTCCTCTTTGCTCTCGTGCACTCCAGAATAAAGCGACCTACTTCA
TGCTGAAGGAGTTCGAAGCCGTGTCCGGCGTTTCGACGGAGGGTGGACGG
TTAGAAGACATGATGTTCCTCTTTGCTCTCGTGCACTCCAGAATAAAGGA
GGCGTACGCGAATGAGCCTGCGAAGGCGGGCCAACTGGAGCCTTCCTCCG
AGGCGGCCAAAAGGGAGGCGTACGCGAATGAGCCTGCGAAGGCGGGCCAA
CTGGAGCCTTCCTCCGAGGCGGCCAAAAGGCGACGTCGCGCACGAAGCAT
TAAACTAGACAAGTTGGTGAAAGCGAAGTACAAGGGACTCGAGGAGGTCA
GGGCAAGAGAAGGGGATGAGGTCGCGGTGGAGGAGTTTTGCAGACGGCGT
CGTGGATCGAGGTGGGGCAGTTGGTGACGACGTCGCGCACGAAGCATTAA
ACTAGACAAGTTGGTGAAAGCGAAGTACAAGGGACTCGAGGAGGTCAGGG
CAAGAGAAGGGGATGAGGTCGCGGTGGAGGAGTTTTGCAGACGGCGTCGT
GGATCGAGGTGGGGCAGTTGGTGA
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