mRNA_H-paniculata_contig1594.3443.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1594.3443.1
Unique NamemRNA_H-paniculata_contig1594.3443.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1594.3443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1594contigH-paniculata_contig1594:21662..22245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1594.3443.1prot_H-paniculata_contig1594.3443.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1594 21925..22236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.337809-UTR-H-paniculata_contig1594:21661..219241622929273.337809-UTR-H-paniculata_contig1594:21661..21924Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1594 21662..21924 +
1691480795.8555446-UTR-H-paniculata_contig1594:21661..219241691480795.8555446-UTR-H-paniculata_contig1594:21661..21924Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1594 21662..21924 +
1622929273.377298-UTR-H-paniculata_contig1594:22236..222451622929273.377298-UTR-H-paniculata_contig1594:22236..22245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1594 22237..22245 +
1691480795.8760045-UTR-H-paniculata_contig1594:22236..222451691480795.8760045-UTR-H-paniculata_contig1594:22236..22245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1594 22237..22245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.3568344-CDS-H-paniculata_contig1594:21924..222361622929273.3568344-CDS-H-paniculata_contig1594:21924..22236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1594 21925..22236 +
1691480795.8664324-CDS-H-paniculata_contig1594:21924..222361691480795.8664324-CDS-H-paniculata_contig1594:21924..22236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1594 21925..22236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1594.3443.1

>prot_H-paniculata_contig1594.3443.1 ID=prot_H-paniculata_contig1594.3443.1|Name=mRNA_H-paniculata_contig1594.3443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSTICCSMYPPTNESLRFCFGGLVSRCRVYSIILYFVLQYMYKLDTFFGI
VEGVEGRSYLIIAHGQFTVVLPRYKHRGIYNEETSRVLQNDGGLGFGSRN
TGV*
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mRNA from alignment at H-paniculata_contig1594:21662..22245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1594.3443.1 ID=mRNA_H-paniculata_contig1594.3443.1|Name=mRNA_H-paniculata_contig1594.3443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=584bp|location=Sequence derived from alignment at H-paniculata_contig1594:21662..22245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTATCTCGCAGGCCGTACCAGTTAATCGCAACGTTGGGAATTCGCACT
GAACATAGCATGTGCATACACATTCACAATATATGCGTATTGCTTATTAA
TGCATGGTATTGGTAAACAAACTGAAACGCGCATATTATTTGCGTCGAAT
AAACCAGCTTCGAGCTTGAGATAATCTCCAAAATGAAGGAAATGATGTAC
AAAAATCGTAATTTCAAGGTTACCCTAAGTTGAGTTTCACCCTGAAGAAA
TACGCCATCCTTAATGTCTACAATCTGCTGTTCGATGTATCCACCTACCA
ACGAGTCCCTACGCTTCTGCTTCGGTGGACTCGTGAGCCGGTGTAGAGTG
TATAGCATAATACTGTATTTCGTTCTGCAGTACATGTACAAATTAGACAC
ATTTTTTGGGATTGTTGAAGGGGTGGAGGGCCGCAGTTACTTGATTATTG
CACACGGTCAATTTACCGTTGTTTTACCGCGTTATAAACACCGCGGTATT
TATAACGAGGAAACCTCTCGTGTTTTACAAAACGACGGGGGGCTAGGGTT
TGGATCTCGTAATACTGGAGTTTGAGATCCGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1594:21662..22245+

>mRNA_H-paniculata_contig1594.3443.1 ID=mRNA_H-paniculata_contig1594.3443.1|Name=mRNA_H-paniculata_contig1594.3443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig1594:21662..22245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTACAATCTGCTGTTCGATGTATCCACCTACCAACGAGTCCCTACG
CTTCTGCTTCGGTGGACTCGTGAGCCGGTGTAGAGTGTATAGCATAATAC
TGTATTTCGTTCTGCAGTACATGTACAAATTAGACACATTTTTTGGGATT
GTTGAAGGGGTGGAGGGCCGCAGTTACTTGATTATTGCACACGGTCAATT
TACCGTTGTTTTACCGCGTTATAAACACCGCGGTATTTATAACGAGGAAA
CCTCTCGTGTTTTACAAAACGACGGGGGGCTAGGGTTTGGATCTCGTAAT
ACTGGAGTTTGAATGTCTACAATCTGCTGTTCGATGTATCCACCTACCAA
CGAGTCCCTACGCTTCTGCTTCGGTGGACTCGTGAGCCGGTGTAGAGTGT
ATAGCATAATACTGTATTTCGTTCTGCAGTACATGTACAAATTAGACACA
TTTTTTGGGATTGTTGAAGGGGTGGAGGGCCGCAGTTACTTGATTATTGC
ACACGGTCAATTTACCGTTGTTTTACCGCGTTATAAACACCGCGGTATTT
ATAACGAGGAAACCTCTCGTGTTTTACAAAACGACGGGGGGCTAGGGTTT
GGATCTCGTAATACTGGAGTTTGA
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