mRNA_H-paniculata_contig15937.3440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15937.3440.1
Unique NamemRNA_H-paniculata_contig15937.3440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.750e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   10 YFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQVL 135
            YF YMSKAFFHK+PTVLCKIVGVYQIG+HNKVTGKRQMDQV+
Sbjct: 2582 YFEYMSKAFFHKLPTVLCKIVGVYQIGYHNKVTGKRQMDQVV 2623
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BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.750e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   10 YFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQVL 135
            YF YMSKAFFHK+PTVLCKIVGVYQIG+HNKVTGKRQMDQV+
Sbjct: 2883 YFEYMSKAFFHKLPTVLCKIVGVYQIGYHNKVTGKRQMDQVV 2924
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BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: A0A835ZAJ6_9STRA (PIPK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.240e-16
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:   10 YFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQVL 135
            YF Y++KAFFHK+PTVLCKI+GVYQIG+HNK TGKR MDQV+
Sbjct:  118 YFEYLAKAFFHKLPTVLCKIMGVYQIGYHNKATGKRYMDQVV 159
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BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: B8CFF1_THAPS (PIPK domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFF1_THAPS)

HSP 1 Score: 75.1 bits (183), Expect = 1.010e-14
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 STSYFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQV 132
            S +YF Y+SKAFFH +PTVLCKIVGVYQIG+HN++TGKR M+QV
Sbjct:  124 SPAYFEYLSKAFFHGLPTVLCKIVGVYQIGYHNRLTGKRSMEQV 167
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BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: A0A1Z5KGF3_FISSO (1-phosphatidylinositol-3-phosphate 5-kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGF3_FISSO)

HSP 1 Score: 75.5 bits (184), Expect = 1.220e-14
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 STSYFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQV 132
            S++YF Y+SKAFFH +PTVLCKIVGVYQIG HN+VTGKR M+QV
Sbjct: 1296 SSAYFEYLSKAFFHGLPTVLCKIVGVYQIGIHNRVTGKRTMEQV 1339
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BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: A0A7S1D8L3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8L3_CYCTE)

HSP 1 Score: 75.1 bits (183), Expect = 1.570e-14
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    7 SYFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQV 132
            +YF Y+SKAFFH +PTVLCKIVGVYQIG+HN+VTGKR M+QV
Sbjct:  152 AYFEYLSKAFFHGLPTVLCKIVGVYQIGYHNRVTGKRSMEQV 193
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BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: A0A7S0UG54_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UG54_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.650e-14
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    7 SYFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQV 132
            +YF Y+SKAFFH +PTVLCKIVGVYQIG+HN+VTGKR M+QV
Sbjct:  237 AYFEYLSKAFFHGLPTVLCKIVGVYQIGYHNRVTGKRSMEQV 278
[Close]
BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: A0A448ZKD0_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKD0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.670e-14
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    7 SYFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQV 132
            +YF Y+SKAFFH +PTVLCKIVGVYQIG+HN+VTGKR M+QV
Sbjct: 1845 AYFEYLSKAFFHGLPTVLCKIVGVYQIGYHNRVTGKRSMEQV 1886
[Close]
BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: A0A7S1YB45_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YB45_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.270e-14
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    7 SYFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQV 132
            +YF Y+SKAFFH +PT+LCKIVGVYQIG+HN+VTGKR M+QV
Sbjct:  360 AYFEYLSKAFFHGLPTILCKIVGVYQIGYHNRVTGKRSMEQV 401
[Close]
BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Match: A0A7S4RS32_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RS32_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.280e-14
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    7 SYFGYMSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQV 132
            +YF Y+SKAFFH +PTVLCKIVGVYQIG+HN+VTGKR M+QV
Sbjct:  598 AYFEYLSKAFFHGLPTVLCKIVGVYQIGYHNRVTGKRTMEQV 639
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15937.3440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K771_9PHAE1.750e-1790.48PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G3Z3_ECTSI1.750e-1790.481-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A835ZAJ6_9STRA9.240e-1678.57PIPK domain-containing protein n=1 Tax=Tribonema m... [more]
B8CFF1_THAPS1.010e-1475.00PIPK domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A1Z5KGF3_FISSO1.220e-1477.271-phosphatidylinositol-3-phosphate 5-kinase n=2 Ta... [more]
A0A7S1D8L3_CYCTE1.570e-1478.57Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0UG54_9STRA1.650e-1478.57Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A448ZKD0_9STRA1.670e-1478.571-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S1YB45_9STRA2.270e-1476.19Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4RS32_9STRA2.280e-1478.57Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15937contigH-paniculata_contig15937:49..204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue6.5e-13
Seed eggNOG ortholog2880.D7G3Z3
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0230@2759
Ec32 ortholog descriptionGroEL-like apical domain
Ec32 orthologEc-19_000710.1
EC2.7.1.150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size156
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.2601883-CDS-H-paniculata_contig15937:48..1831622929273.2601883-CDS-H-paniculata_contig15937:48..183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15937 49..183 -
1691480795.8339689-CDS-H-paniculata_contig15937:48..1831691480795.8339689-CDS-H-paniculata_contig15937:48..183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15937 49..183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.2938318-UTR-H-paniculata_contig15937:183..2041622929273.2938318-UTR-H-paniculata_contig15937:183..204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15937 184..204 -
1691480795.8448749-UTR-H-paniculata_contig15937:183..2041691480795.8448749-UTR-H-paniculata_contig15937:183..204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15937 184..204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15937.3440.1prot_H-paniculata_contig15937.3440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15937 49..183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15937.3440.1

>prot_H-paniculata_contig15937.3440.1 ID=prot_H-paniculata_contig15937.3440.1|Name=mRNA_H-paniculata_contig15937.3440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MSKAFFHKMPTVLCKIVGVYQIGFHNKVTGKRQMDQVLYYYYYYY
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mRNA from alignment at H-paniculata_contig15937:49..204-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15937.3440.1 ID=mRNA_H-paniculata_contig15937.3440.1|Name=mRNA_H-paniculata_contig15937.3440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig15937:49..204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGACCAGCTACTTCGGCTATATGTCAAAGGCGTTTTTCCACAAGATGCC
TACAGTACTCTGCAAGATCGTTGGTGTGTACCAGATCGGCTTCCACAACA
AGGTCACCGGGAAGCGCCAGATGGACCAGGTGTTGTATTATTATTATTAT
TATTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig15937:49..204-

>mRNA_H-paniculata_contig15937.3440.1 ID=mRNA_H-paniculata_contig15937.3440.1|Name=mRNA_H-paniculata_contig15937.3440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig15937:49..204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAAGGCGTTTTTCCACAAGATGCCTACAGTACTCTGCAAGATCGT
TGGTGTGTACCAGATCGGCTTCCACAACAAGGTCACCGGGAAGCGCCAGA
TGGACCAGGTGTTGTATTATTATTATTATTATTATATGTCAAAGGCGTTT
TTCCACAAGATGCCTACAGTACTCTGCAAGATCGTTGGTGTGTACCAGAT
CGGCTTCCACAACAAGGTCACCGGGAAGCGCCAGATGGACCAGGTGTTGT
ATTATTATTATTATTATTAT
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