prot_H-paniculata_contig1593.3436.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1593.3436.1
Unique Name	prot_H-paniculata_contig1593.3436.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	233

Homology

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BLAST of mRNA_H-paniculata_contig1593.3436.1 vs. uniprot
Match: D7FWV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV8_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 5.640e-40
Identity = 146/245 (59.59%), Postives = 163/245 (66.53%), Query Frame = 0

Query:    5 VEPCPFDCDGQRYPSFPYKPGAESLFSTALPIILSAMVVVISWLAGRFIDQIKVTAQQGGMPRVKS------LKRCVSNDKD----FHSS------RGGPMSTASVQELEGISLADDE-GRLYNETYGSEHSRDDGDRYDALGDSPGAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVTMLGVPGSQIGSSTYDVTSSHAGSGASQYAGPVPSNLGASHRSGELGSLNGSGGG 232
             EPC  DC  Q YP+FPY PGAESLFS  LP +LSAMVV ISWLAGRFID+I+V+   G M RVKS      +KR  S+DK     FHS+      R G      VQEL+GIS  DDE  RLYNE YGS+ S++DG+RYDALGDSPGAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +        GS  G S Y   SS  GS   QY GPVPS+ GAS  S +  S + S GG
Sbjct:    3 TEPCEIDCTIQNYPTFPYGPGAESLFSKVLPFMLSAMVVAISWLAGRFIDKIEVSTP-GAMTRVKSGTIGQSVKRSASHDKSDSHGFHSNASRGVGRSGVKMLEGVQELDGISARDDEQNRLYNEEYGSQASQEDGERYDALGDSPGAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSRAS-------GSIYGHSQYGDGSSLGGS---QYPGPVPSHFGASQMSSDRTSYHASNGG 236

[Close]

BLAST of mRNA_H-paniculata_contig1593.3436.1 vs. uniprot
Match: A0A6H5JK61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK61_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.200e-39
Identity = 144/245 (58.78%), Postives = 161/245 (65.71%), Query Frame = 0

Query:    5 VEPCPFDCDGQRYPSFPYKPGAESLFSTALPIILSAMVVVISWLAGRFIDQIKVTAQQGGMPRVKS------LKRCVSNDKD----FHSS------RGGPMSTASVQELEGISLADDE-GRLYNETYGSEHSRDDGDRYDALGDSPGAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVTMLGVPGSQIGSSTYDVTSSHAGSGASQYAGPVPSNLGASHRSGELGSLNGSGGG 232
             EPC  DC  Q YP +PY PGAESLFS  LP +LSAMVV ISWLAGRFID+I+V+   G M RVKS      +KR  S+DK     FHS+      R G      VQEL+GIS  DDE  RLY+E YGS+ S++DG+RYDALGDSPGAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +        GS  G S Y   SS  GS    Y GPVPS+ GAS  S E  S + S GG
Sbjct:    3 TEPCELDCPIQNYPDYPYGPGAESLFSRVLPFMLSAMVVAISWLAGRFIDKIEVSTP-GAMTRVKSGTIGQSVKRSASHDKSDSHGFHSNASRGVGRSGVKMLEGVQELDGISAQDDEQNRLYHEEYGSQASQEDGERYDALGDSPGAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRSRAS-------GSIYGHSQYGDGSSLGGS---HYPGPVPSHFGASQMSSERTSYHASNGG 236

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1593.3436.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1593.3436.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FWV8_ECTSI	5.640e-40	59.59	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JK61_9PHAE	1.200e-39	58.78	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 29..49
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 50..233
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..28
None	No IPR available	TMHMM	TMhelix		coord: 28..50

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1593	contig	H-paniculata_contig1593:7999..18973 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1593.3436.1	mRNA_H-paniculata_contig1593.3436.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1593 7458..18973 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1593.3436.1 ID=prot_H-paniculata_contig1593.3436.1|Name=mRNA_H-paniculata_contig1593.3436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MASRVEPCPFDCDGQRYPSFPYKPGAESLFSTALPIILSAMVVVISWLAG
RFIDQIKVTAQQGGMPRVKSLKRCVSNDKDFHSSRGGPMSTASVQELEGI
SLADDEGRLYNETYGSEHSRDDGDRYDALGDSPGAQGPSSQGPRSPSVYS
QFSQSVFSQSAYGPSAYGPSQRRPSGVTMLGVPGSQIGSSTYDVTSSHAG
SGASQYAGPVPSNLGASHRSGELGSLNGSGGGV