mRNA_H-paniculata_contig1593.3435.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1593.3435.1
Unique NamemRNA_H-paniculata_contig1593.3435.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1593.3435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1593contigH-paniculata_contig1593:6140..7080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.7513509-CDS-H-paniculata_contig1593:6141..63881622929272.7513509-CDS-H-paniculata_contig1593:6141..6388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1593 6142..6388 -
1691480795.6362662-CDS-H-paniculata_contig1593:6141..63881691480795.6362662-CDS-H-paniculata_contig1593:6141..6388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1593 6142..6388 -
1622929272.7678168-CDS-H-paniculata_contig1593:7036..70801622929272.7678168-CDS-H-paniculata_contig1593:7036..7080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1593 7037..7080 -
1691480795.6462095-CDS-H-paniculata_contig1593:7036..70801691480795.6462095-CDS-H-paniculata_contig1593:7036..7080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1593 7037..7080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1593.3435.1prot_H-paniculata_contig1593.3435.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1593 6142..7080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1593.3435.1

>prot_H-paniculata_contig1593.3435.1 ID=prot_H-paniculata_contig1593.3435.1|Name=mRNA_H-paniculata_contig1593.3435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
VDSSVNSKEASKPYRDRLSSECVRFVLRGGDGAQNHSFAAMATWNAVEDG
SPGWEPEGNNAGGAQTDLVANDAASGVESGYFAETKDNGDGATTENG
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mRNA from alignment at H-paniculata_contig1593:6140..7080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1593.3435.1 ID=mRNA_H-paniculata_contig1593.3435.1|Name=mRNA_H-paniculata_contig1593.3435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=941bp|location=Sequence derived from alignment at H-paniculata_contig1593:6140..7080- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACAGTAGTGTAAACAGCAAAGAAGCATCAAAGCCATATAGGTAGGT
GGTAAGCTGGTGTAGAGTGAATCCACAACAAGGGTTTTTCTAGTCAGAGG
GCTGTCAGACATTCCAAGGGAGAGGTACGTGTGTCGAGGATTGTAATCAT
TGTGGCGGTTGAACTTCTGTTTACCTAAAACATCTTTCCGGTCAGCCTGT
ATCAGGACGCTACTTGTTGACCTGACTGTACTCATAGATATATGATCACA
CAGGAAAATCAGGTACAGCTTCATTTTTTGTTTACTACAACAAACAGTAC
AGATAGCAATGAACAGGACAACATCACGTTTTCACAAGGGTCGCCACCCT
GAGAGGAAAGAAGGAGAGAGGAGAGAAGAGGAGGTGTTTAGGACACCTTT
TTTTCGTACCCTTTGTATGCGAGGACAATTAAGATCCCTCGGGGTGCATA
GATACATAGAGGTGGCAAGGAGCCTCTGCGACAACAGAAACAATTCACAG
AGCACCAACTGACGCACGCAAGCTTTGGAAGCTCAGGCCCTGTCACCAAC
ATCGCCTGCCCTTGTGCTTCTGAGAGCGAAACTACTGTCCGTGGACTTTT
CTCCCTCAAAATTTCAGCCAGCATTTTTTTCTTTTTCTTTTATTTGGTGC
ATCTTTGTTTCTCTCTGGGTCGGAACACACGCGCTTTCACAGGGACAGGT
TGTCTTCAGAGTGTGTTCGTTTCGTATTGAGGGGTGGGGACGGGGCGCAA
AATCATAGTTTTGCCGCCATGGCCACTTGGAACGCAGTAGAGGACGGTTC
GCCAGGCTGGGAGCCGGAGGGGAACAATGCAGGCGGAGCGCAAACAGATC
TAGTTGCCAACGACGCTGCATCTGGCGTCGAGTCTGGCTACTTCGCTGAA
ACCAAAGACAACGGAGATGGAGCCACCACCGAAAATGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1593:6140..7080-

>mRNA_H-paniculata_contig1593.3435.1 ID=mRNA_H-paniculata_contig1593.3435.1|Name=mRNA_H-paniculata_contig1593.3435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig1593:6140..7080- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACAGTAGTGTAAACAGCAAAGAAGCATCAAAGCCATATAGGTAGAC
AGTAGTGTAAACAGCAAAGAAGCATCAAAGCCATATAGGGACAGGTTGTC
TTCAGAGTGTGTTCGTTTCGTATTGAGGGGTGGGGACGGGGCGCAAAATC
ATAGTTTTGCCGCCATGGCCACTTGGAACGCAGTAGAGGACGGTTCGCCA
GGCTGGGAGCCGGAGGGGAACAATGCAGGCGGAGCGCAAACAGATCTAGT
TGCCAACGACGCTGCATCTGGCGTCGAGTCTGGCTACTTCGCTGAAACCA
AAGACAACGGAGATGGAGCCACCACCGAAAATGGGGGACAGGTTGTCTTC
AGAGTGTGTTCGTTTCGTATTGAGGGGTGGGGACGGGGCGCAAAATCATA
GTTTTGCCGCCATGGCCACTTGGAACGCAGTAGAGGACGGTTCGCCAGGC
TGGGAGCCGGAGGGGAACAATGCAGGCGGAGCGCAAACAGATCTAGTTGC
CAACGACGCTGCATCTGGCGTCGAGTCTGGCTACTTCGCTGAAACCAAAG
ACAACGGAGATGGAGCCACCACCGAAAATGGG
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