mRNA_H-paniculata_contig15923.3433.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15923.3433.1
Unique NamemRNA_H-paniculata_contig15923.3433.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15923.3433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15923contigH-paniculata_contig15923:3778..4249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.513332-CDS-H-paniculata_contig15923:3777..42031622929272.513332-CDS-H-paniculata_contig15923:3777..4203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15923 3778..4203 +
1691480795.5905645-CDS-H-paniculata_contig15923:3777..42031691480795.5905645-CDS-H-paniculata_contig15923:3777..4203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15923 3778..4203 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.5356688-UTR-H-paniculata_contig15923:4203..42491622929272.5356688-UTR-H-paniculata_contig15923:4203..4249Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15923 4204..4249 +
1691480795.6016922-UTR-H-paniculata_contig15923:4203..42491691480795.6016922-UTR-H-paniculata_contig15923:4203..4249Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15923 4204..4249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15923.3433.1prot_H-paniculata_contig15923.3433.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15923 3778..4203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15923.3433.1

>prot_H-paniculata_contig15923.3433.1 ID=prot_H-paniculata_contig15923.3433.1|Name=mRNA_H-paniculata_contig15923.3433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
LTSTSLAESWSRVSVRFTALTSRILACFRGVKSDGRPTLSCVLRETSFPS
SSCFTTHPYNFPGYFSLTPNALANLDPTPAGSLFFPGGRASAFRLSSLSS
QFLPLADEEFLPADGDSIPVDGLCAFAIASQWICGPFEWLW*
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mRNA from alignment at H-paniculata_contig15923:3778..4249+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15923.3433.1 ID=mRNA_H-paniculata_contig15923.3433.1|Name=mRNA_H-paniculata_contig15923.3433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=472bp|location=Sequence derived from alignment at H-paniculata_contig15923:3778..4249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACTTCGACCAGCTTGGCGGAAAGTTGGTCAAGAGTCAGCGTGCGATT
CACGGCGTTGACGTCTCGGATCTTGGCCTGCTTCCGCGGCGTAAAATCTG
ACGGCCGTCCAACTCTTTCCTGCGTTTTGAGAGAGACCTCATTCCCTTCC
TCGAGTTGCTTTACCACGCACCCCTACAACTTCCCCGGATATTTCTCGTT
GACCCCGAATGCTTTAGCCAACTTAGACCCGACGCCTGCCGGAAGCCTTT
TTTTTCCTGGAGGAAGAGCAAGCGCGTTCCGCCTCTCCTCACTCAGCTCG
CAATTTTTGCCCCTCGCAGATGAAGAGTTCCTACCAGCTGATGGAGATTC
AATCCCAGTGGACGGGCTCTGCGCATTCGCCATCGCGTCTCAATGGATTT
GTGGTCCGTTCGAGTGGTTGTGGTAATCTGTACGAGTGTGTGGGGCTCTG
GGGGCAAGCGAAGAGGTTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15923:3778..4249+

>mRNA_H-paniculata_contig15923.3433.1 ID=mRNA_H-paniculata_contig15923.3433.1|Name=mRNA_H-paniculata_contig15923.3433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig15923:3778..4249+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACTTCGACCAGCTTGGCGGAAAGTTGGTCAAGAGTCAGCGTGCGATT
CACGGCGTTGACGTCTCGGATCTTGGCCTGCTTCCGCGGCGTAAAATCTG
ACGGCCGTCCAACTCTTTCCTGCGTTTTGAGAGAGACCTCATTCCCTTCC
TCGAGTTGCTTTACCACGCACCCCTACAACTTCCCCGGATATTTCTCGTT
GACCCCGAATGCTTTAGCCAACTTAGACCCGACGCCTGCCGGAAGCCTTT
TTTTTCCTGGAGGAAGAGCAAGCGCGTTCCGCCTCTCCTCACTCAGCTCG
CAATTTTTGCCCCTCGCAGATGAAGAGTTCCTACCAGCTGATGGAGATTC
AATCCCAGTGGACGGGCTCTGCGCATTCGCCATCGCGTCTCAATGGATTT
GTGGTCCGTTCGAGTGGTTGTGGTAACTCACTTCGACCAGCTTGGCGGAA
AGTTGGTCAAGAGTCAGCGTGCGATTCACGGCGTTGACGTCTCGGATCTT
GGCCTGCTTCCGCGGCGTAAAATCTGACGGCCGTCCAACTCTTTCCTGCG
TTTTGAGAGAGACCTCATTCCCTTCCTCGAGTTGCTTTACCACGCACCCC
TACAACTTCCCCGGATATTTCTCGTTGACCCCGAATGCTTTAGCCAACTT
AGACCCGACGCCTGCCGGAAGCCTTTTTTTTCCTGGAGGAAGAGCAAGCG
CGTTCCGCCTCTCCTCACTCAGCTCGCAATTTTTGCCCCTCGCAGATGAA
GAGTTCCTACCAGCTGATGGAGATTCAATCCCAGTGGACGGGCTCTGCGC
ATTCGCCATCGCGTCTCAATGGATTTGTGGTCCGTTCGAGTGGTTGTGGT
AA
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