prot_H-paniculata_contig15895.3412.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig15895.3412.1
Unique Nameprot_H-paniculata_contig15895.3412.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length166
Homology
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BLAST of mRNA_H-paniculata_contig15895.3412.1 vs. uniprot
Match: D8LSU6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU6_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.000e-32
Identity = 78/155 (50.32%), Postives = 96/155 (61.94%), Query Frame = 0 
Query:   16 VCGLATLGVA----KPSKATHKALAKAHKRMG-TKPTGNHDLIDGDI-DFDDLSPKDCATYMCVSQVATATEYIEAGCPGPYSHFETGSNKQTEGEMDMGEILMESSDFDGAAAGVTTGTLMALASASGVFAAGVGFMAGYKTSPSFAYMRIPSL 164
            V GL   G+A    KP+  T     K  K  G  K    H  +DGD+ DFD +SPKDCA Y+CVS    AT YIEAGCPG ++ +E   + +   +  +G      S   GA+ GV+TGTL++LA ASGVFA GVGF+AGYK SPSFAYMRIPSL
Sbjct:   10 VMGLLVAGLAFASGKPAWGTDGEGLKNVKSGGHQKGAPGHKGLDGDLLDFDSVSPKDCANYLCVSSPDKATYYIEAGCPGQFADYEPDRDPEEPVDSYLGF-----SSSAGASTGVSTGTLLSLACASGVFAVGVGFVAGYKASPSFAYMRIPSL 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15895.3412.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSU6_ECTSI1.000e-3250.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..165
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..25
score: 0.593
NoneNo IPR availableTMHMMTMhelixcoord: 128..150
NoneNo IPR availableTMHMMTMhelixcoord: 7..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15895contigH-paniculata_contig15895:1329..4465 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15895.3412.1mRNA_H-paniculata_contig15895.3412.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig15895 1075..5950 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig15895.3412.1 ID=prot_H-paniculata_contig15895.3412.1|Name=mRNA_H-paniculata_contig15895.3412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MIIRRRFSIAALMIVVCGLATLGVAKPSKATHKALAKAHKRMGTKPTGNH
DLIDGDIDFDDLSPKDCATYMCVSQVATATEYIEAGCPGPYSHFETGSNK
QTEGEMDMGEILMESSDFDGAAAGVTTGTLMALASASGVFAAGVGFMAGY
KTSPSFAYMRIPSLV*
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