mRNA_H-paniculata_contig15895.3412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15895.3412.1
Unique NamemRNA_H-paniculata_contig15895.3412.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15895.3412.1 vs. uniprot
Match: D8LSU6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU6_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.930e-29
Identity = 79/163 (48.47%), Postives = 101/163 (61.96%), Query Frame = 3 
Query:  264 RRRFSIAALMIVVCGLATLGVAKPSKATHKALAKAHKRMG-TKPTGNHDLIDGDI-DFDDLSPKDCATYMCVSQVATATEYIEAGCPGPYSHFETGSNKQTEGEMDMGEILMESSDFDGAAAGVTTGTLMALASASGVFAAGVGFMAGYKTSPSFAYMRIPSL 746
            +RR ++  L++   GLA     KP+  T     K  K  G  K    H  +DGD+ DFD +SPKDCA Y+CVS    AT YIEAGCPG ++ +E   + +   +  +G      S   GA+ GV+TGTL++LA ASGVFA GVGF+AGYK SPSFAYMRIPSL
Sbjct:    5 KRRAAVMGLLVA--GLA-FASGKPAWGTDGEGLKNVKSGGHQKGAPGHKGLDGDLLDFDSVSPKDCANYLCVSSPDKATYYIEAGCPGQFADYEPDRDPEEPVDSYLGF-----SSSAGASTGVSTGTLLSLACASGVFAVGVGFVAGYKASPSFAYMRIPSL 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15895.3412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSU6_ECTSI4.930e-2948.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15895contigH-paniculata_contig15895:1075..5950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001480.1
Exons2
Model size2237
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15895.3412.1prot_H-paniculata_contig15895.3412.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15895 1329..4465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929267.8589108-UTR-H-paniculata_contig15895:1074..13281622929267.8589108-UTR-H-paniculata_contig15895:1074..1328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15895 1075..1328 +
1691480794.1701388-UTR-H-paniculata_contig15895:1074..13281691480794.1701388-UTR-H-paniculata_contig15895:1074..1328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15895 1075..1328 +
1622929267.9039288-UTR-H-paniculata_contig15895:4465..59501622929267.9039288-UTR-H-paniculata_contig15895:4465..5950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15895 4466..5950 +
1691480794.1997445-UTR-H-paniculata_contig15895:4465..59501691480794.1997445-UTR-H-paniculata_contig15895:4465..5950Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15895 4466..5950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929267.8726637-CDS-H-paniculata_contig15895:1328..16871622929267.8726637-CDS-H-paniculata_contig15895:1328..1687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15895 1329..1687 +
1691480794.1793215-CDS-H-paniculata_contig15895:1328..16871691480794.1793215-CDS-H-paniculata_contig15895:1328..1687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15895 1329..1687 +
1622929267.8870397-CDS-H-paniculata_contig15895:4326..44651622929267.8870397-CDS-H-paniculata_contig15895:4326..4465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15895 4327..4465 +
1691480794.1887116-CDS-H-paniculata_contig15895:4326..44651691480794.1887116-CDS-H-paniculata_contig15895:4326..4465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15895 4327..4465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15895.3412.1

>prot_H-paniculata_contig15895.3412.1 ID=prot_H-paniculata_contig15895.3412.1|Name=mRNA_H-paniculata_contig15895.3412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MIIRRRFSIAALMIVVCGLATLGVAKPSKATHKALAKAHKRMGTKPTGNH
DLIDGDIDFDDLSPKDCATYMCVSQVATATEYIEAGCPGPYSHFETGSNK
QTEGEMDMGEILMESSDFDGAAAGVTTGTLMALASASGVFAAGVGFMAGY
KTSPSFAYMRIPSLV*
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mRNA from alignment at H-paniculata_contig15895:1075..5950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15895.3412.1 ID=mRNA_H-paniculata_contig15895.3412.1|Name=mRNA_H-paniculata_contig15895.3412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4876bp|location=Sequence derived from alignment at H-paniculata_contig15895:1075..5950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTTATATTCAGTACAGGGAAGGACATCACGCTCAGGAGAGACAGTCGC
TTTAACAACGAAGAATAGTGTTGCCACAGCGGTGACTTGCTCACCCCAGC
ACAACAAACCCTTACTGCTGTTTTGGGTCTATTTTTCAGGACTTCAAGGT
ACATACGAACCATTTAACATCCACAACGAATTGGCTTCGTTGCCTCGTGC
GGAGCAATACAGCAGAAGTCGCAGGGCGGTTAGGCAAGTAGGCAGGCAGT
AGAGATGATCATCAGACGGCGGTTCTCGATAGCGGCTTTGATGATCGTCG
TTTGCGGGCTAGCAACCCTGGGCGTGGCAAAGCCTTCGAAGGCGACACAC
AAAGCGCTCGCGAAGGCCCACAAGCGCATGGGCACCAAGCCCACAGGCAA
TCATGACCTGATAGATGGCGACATAGATTTTGATGATCTCTCCCCGAAGG
ACTGCGCGACCTATATGTGCGTATCCCAAGTGGCAACAGCAACGGAGTAC
ATTGAGGCCGGCTGCCCGGGACCGTATTCGCATTTTGAGACGGGGTCGAA
CAAGCAGACCGAGGGGGAGATGGACATGGGGGAGATTCTAATGGAAAGTT
CGGATTTTGATGGGTGAGTGAATTCGTGCTTGGTTCCGTAGAAGGAGTCC
CCTCTAGCTTCTATATCGCCTGTCACATAAAACAGAGTTGTTCGGTGCAG
GTATTGGGGGTTGCATGAGTTTGCTGTCACGTGATCGTGTGGCGTGATCA
ATGTTCTCTCTGTGCCTGATATACGTCTGTATGTTGACTGTCAGTTGCTA
TTGCTCTACGGTGTTGTCGTCAATTGTGTCTGAGATTGTGGTTTCTAGGT
GGGCAGGTTGGGTCGATTAGCACTCGTGGCTGCTCGGTCGCTTGGTCACT
CTTGTGGTGCTCTGTTTCGCTCGCCAAATTGTTGTCATCGTTCTGTTCGT
GGTACGGTAAAAGAAAATGACCGACTGCAGTAAAAAGAGGGTAAATAGCA
CAGCACTGTCCATCATGACCCAAGCTATGCATGTCCTGTGGCCGGTGCGT
ATCACACAGTGACTGAAAGCGGCTCGGCTGTCGGTATCGAACTAACAAGG
CAAGAGCCTCAAATCACACCATGCATTACGCTTCACAAAATGATCTTGTC
TGAGCTATTTCCGAGAAAAGATTCCATCCATACGTTGTTGTGTGAAATAC
CGTTACGGGTCGCACAGATGAGAAAGTCAAGTACTTATCTGAGTTGCAGT
TGTAGCCTCTATTAACAGTACAGCTTGGCCGCCTTCTTGCCTTTCTGTTC
TAGTGGGCGAATTCGGGACCTCAAGTCACTCCAAAAATAATGCGTGATCT
TCTCTCTTTGCTTTTGTTGTCTACTGATGATATCTTGGTGCAGTAGGACG
TGTGATCTTGATACACAAGTTCAACAAACTTCCCGCAAACATCGGTGAAA
AGCTCGGTACCCGAGTCAAAGCGGAACCATGTGTGATCTGGATACATGTC
TTAAACCACTGAAACTTTCGGCCGCTGTTCGGAACAAACATCCGTATGTG
AGGTGGAGTAAATATCGCGGGTTGCATTTGTTTAGCTACACTCGGACCAG
ATGCGTGTTTGCAACGTGTGTGCTGTGTTGCCTAATGAAAATGCGGCGGC
TCCTTACCGCTGCAATCTCCTGTAATCCCCCCTTGAGGCGTCCTGTTCAG
GTGATATCACATCGAAAAGTTGACCCAGTGGGGGTATTTCGTCTTTTTCC
AAGTTCCGGCCTGTTGATACTTTAGCGAGATGCAGGCGTATTTTTACACA
AAGGGCCGATCACCGCACTATTATTGAAGCTACGTACATGTACGCTTAAT
GCTAGTTCTTCTCAATCTGCAAGTCTGACGTGGCACTTTTTGCGGCACTC
AGTGCCCAATCGGCCGCGGGGGTGAGTTCGCATGCCACCCTGCGGCGAAT
AACTCACCCACATGGCGGTAAAAGAAAGTAGTTGAACTAGTTTTGATCGC
CGCCAATAGATGGCTGTACTGGGCAATCCACCCCGAGCATATGTCGTGGA
GTATCGGTCTCCATGATATATACCTCACCTATGGGTTTTCAAGAGGCGAC
CAATTTTCCAAATATCCTCTCCCAACACATTATTTAGTGGAGGTGGGTTG
GTGATTCTCAGCTCGTGGTTATCGCGAAGATTGCCGTAACGGTTCCCCTC
TCACTTGAAGGCATATGGCCAACAACCCGTTACGGATGTGTTCCCAAACT
CCACAACAGAGTTGCGACTGTGCACATCTGGCCTAATGCATTTGCAAGCA
AGTATGTAGCTCGGTACAGTCTTGTGCTTGAGGTGTGTACCTGCCCTCAT
CTTTTCCTGTGGATATGAGATTTTTTTAGAACATTCTACACCGTCAACTT
GGAAAATCATGAATACTCATGTCAAAAAGTTTCTATCGTTTCTCTGATAT
CTACTATCAACATATTCTGCGGCCGCGGTTTATAGTGAGGCTCATTTTTT
CTGTCAAGTCGGAGATGAGACTTCCGACAGTACACACGCGAAAACAAATC
ATAGTGATCGGTTATCTTGTGTATACGGATACAGCTTTACGAAAACAATC
TTGTCGGAAATATCGGCCTCTCCTGCCTCGTCGTGCGCTCATTCAACATT
GTCTGCCTTCTCGTAACTAGCGATACCCTCTTCCTTGCGGGAGGTTAACG
CCTGTGGTCCTCTCCAAGGAAATTCAGCTCATGTTCGCCTAAGGCGTTGG
CCAATCAAAAATACAAGTAATGGAGGCATGTGCGGATAGTCACACTTTCT
CGAAAAAAACCATCACAATTAATTGTGTATTCCGTTCTTGGCTCTTGGAG
GCTGGGCCCACCAAAAGAAACTTCAAGTAATTCCACGGACTTCGCGAACA
TTTCTCACTTGGGCTTTCGACGTTTGGACCTGAAATTTCAATAGTGGGCG
CGTATTCAAATATCGAACGCCGTTGAAGTATTGCCTACTTCCCCACTTCA
TACAAAAACGTGGCCATCATACGTTATTTTTTTCCAACCAAAACTTTGAA
ATGGTTCTTGTTGGGATCCCAAACCCATATCATGTTTCTTTTCGTGATGT
TAGGAAAACGCACACCACTTTTGAAAATTAATCTTGCATGAATCGGTCAC
AAATGTGACATACTTCCCTTTTGCACCAACACGTACCTTCTCTCATCTAC
CTCCCTGTCGCGTGCGTTTGCGTCTTTCTGTTTCTGTTCGAACTCACTAC
AGGGCGGCGGCTGGAGTAACGACAGGCACGCTCATGGCGCTCGCGTCCGC
ATCAGGTGTTTTCGCTGCTGGAGTAGGCTTTATGGCGGGCTACAAGACCT
CCCCCTCGTTTGCGTACATGCGCATCCCGTCTCTCGTATGATGATTGAGG
AGTCAACCTTGCCGTCTGTCGTCGCGTTTTTTCTCTTTTTTCGGTCGGAA
ATTAGTAAAACCTTACCTCGACTGACCGTTTTTTTTCGCGTTTTAGTTCG
TCCGTAGTGTGCTGCGCACTAGACATGACAAGTTGCTGCGGTAGTTCCGG
ATTGAAATGAGGGGCGACTAGTGGGAGAGAAAACCAAACTTACTCCTAAC
GCCCGCGGTATTTCCTGGCACGTTCCTAGGAGCCGGGGTGAGGGCGGGGG
AGGGGGGTCATAGAGGCGTTCGCTTGCTTCCGCTGAGTAGAGTAGTGAGG
GCGGCGGGGGCATTGTAGAATCTGCGATATGGGAAGTGGCGTATTTTTGT
ATCGAGGGTGTCGTTGTCTTTCGCCACAAGCTTGAGCAGTCATATGCGTC
GATTCCGCTCCGTGTTGGACGAAGGAAATATACGGGTGGGCCGTTGGATA
GGCGAGAATATTTGCCCTCGTTCGTGGTGACTGTTTAGTTGTCGGTGCTA
GAGTACGAGGTTTATTCTTTGCTTTTCATTGTGGACACGTTCATATGTGG
GATTTTGCTGGTGAGTGTATGATTTGTTGTGTCGGGTATTACCTGTGCGT
TTATGTCAATTTTCCAAATTTCTCACGATATTACAAACTGGTGTAGTCTA
AAGAGGTTGGGGCAGTGCGTCGACTGCGGTGCTCTTGGTGTTCTTGGTCG
TGTGTCGCACATGTGACGCATTAGTGCCGGGAATGTTTTTACGGACACGT
TCGCACATTTTTAGCGCATTGCTGAATTTTGCGTGTAATTGTTAGCTGTC
TAGGCTATACTGCTCTGGCGATATGGGGAGAATGAGCATTTGCCAACCCG
TGTGTCGCCATATTGTTAGGTGCAGCTGAGTGTTGTGTGCTGTTTGATCT
AAGTCGATATTTTACGTTAGGTTTTGTGTTGAGTAAGTCCTCCGTATCTA
GGGTACAGCCAACTCTGTTGCCTTTGCTCTTCAAGTACGGGTAAAAAAAG
ACTTGAAGTGTAACATTTCTTGGCGGGATCTTGAGCTCACCAATAGTACC
AACGTGATGTACTACAAGGATCATGAGAGCCCGCGGACTCGACCCGTGCC
CCCCTAAGTACCTTCCCCACGCGGCCGGTGAGAGGGTCACCCTTGGGGTC
CCCCAAGGACATTGCACTGAAAATATGTGTAATAGTTTGAAGTTAAGGTT
CGGCGATACAAGTTGACACCAATATGTTCAAATTATTATTTTCCTACACG
ATGTTCGTTTTTCAAGATCTTGGAGCAGATTCGAGGTGAAAAATTCACGG
TTCACCATTTGAAAGTTCACACCTTCGACGCATATGGAACTTTCAAGAAA
AAAATTCTTTTCAGTAGTTGAGCAAATAATAACAAAACACCTCTGGGGAG
GAGTGGTGGCCAGAGGACGATATATGTTCATTGTCTATGGCCAAAAGAAG
AGTAGCCGATATCAGCACGACACTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig15895:1075..5950+

>mRNA_H-paniculata_contig15895.3412.1 ID=mRNA_H-paniculata_contig15895.3412.1|Name=mRNA_H-paniculata_contig15895.3412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig15895:1075..5950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCATCAGACGGCGGTTCTCGATAGCGGCTTTGATGATCGTCGTTTG
CGGGCTAGCAACCCTGGGCGTGGCAAAGCCTTCGAAGGCGACACACAAAG
CGCTCGCGAAGGCCCACAAGCGCATGGGCACCAAGCCCACAGGCAATCAT
GACCTGATAGATGGCGACATAGATTTTGATGATCTCTCCCCGAAGGACTG
CGCGACCTATATGTGCGTATCCCAAGTGGCAACAGCAACGGAGTACATTG
AGGCCGGCTGCCCGGGACCGTATTCGCATTTTGAGACGGGGTCGAACAAG
CAGACCGAGGGGGAGATGGACATGGGGGAGATTCTAATGGAAAGTTCGGA
TTTTGATGGATGATCATCAGACGGCGGTTCTCGATAGCGGCTTTGATGAT
CGTCGTTTGCGGGCTAGCAACCCTGGGCGTGGCAAAGCCTTCGAAGGCGA
CACACAAAGCGCTCGCGAAGGCCCACAAGCGCATGGGCACCAAGCCCACA
GGCAATCATGACCTGATAGATGGCGACATAGATTTTGATGATCTCTCCCC
GAAGGACTGCGCGACCTATATGTGCGTATCCCAAGTGGCAACAGCAACGG
AGTACATTGAGGCCGGCTGCCCGGGACCGTATTCGCATTTTGAGACGGGG
TCGAACAAGCAGACCGAGGGGGAGATGGACATGGGGGAGATTCTAATGGA
AAGTTCGGATTTTGATGGGGCGGCGGCTGGAGTAACGACAGGCACGCTCA
TGGCGCTCGCGTCCGCATCAGGTGTTTTCGCTGCTGGAGTAGGCTTTATG
GCGGGCTACAAGACCTCCCCCTCGTTTGCGTACATGCGCATCCCGTCTCT
CGTATGAGGCGGCGGCTGGAGTAACGACAGGCACGCTCATGGCGCTCGCG
TCCGCATCAGGTGTTTTCGCTGCTGGAGTAGGCTTTATGGCGGGCTACAA
GACCTCCCCCTCGTTTGCGTACATGCGCATCCCGTCTCTCGTATGA
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