mRNA_H-paniculata_contig10523.341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	2774
Cds size	1509
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig10523.341.1	prot_H-paniculata_contig10523.341.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig10523 4982..7476 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928755.2490938-UTR-H-paniculata_contig10523:4927..4981	1622928755.2490938-UTR-H-paniculata_contig10523:4927..4981	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig10523 4928..4981 +
1691480607.1863837-UTR-H-paniculata_contig10523:4927..4981	1691480607.1863837-UTR-H-paniculata_contig10523:4927..4981	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig10523 4928..4981 +
1622928755.2881775-UTR-H-paniculata_contig10523:7476..8687	1622928755.2881775-UTR-H-paniculata_contig10523:7476..8687	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig10523 7477..8687 +
1691480607.2387857-UTR-H-paniculata_contig10523:7476..8687	1691480607.2387857-UTR-H-paniculata_contig10523:7476..8687	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig10523 7477..8687 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928755.2618375-CDS-H-paniculata_contig10523:4981..5017	1622928755.2618375-CDS-H-paniculata_contig10523:4981..5017	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10523 4982..5017 +
1691480607.2048993-CDS-H-paniculata_contig10523:4981..5017	1691480607.2048993-CDS-H-paniculata_contig10523:4981..5017	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10523 4982..5017 +
1622928755.2753108-CDS-H-paniculata_contig10523:6003..7476	1622928755.2753108-CDS-H-paniculata_contig10523:6003..7476	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10523 6004..7476 +
1691480607.223694-CDS-H-paniculata_contig10523:6003..7476	1691480607.223694-CDS-H-paniculata_contig10523:6003..7476	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10523 6004..7476 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig10523:4928..8687+
coding sequence from alignment at H-paniculata_contig10523:4928..8687+

protein sequence of mRNA_H-paniculata_contig10523.341.1

>prot_H-paniculata_contig10523.341.1 ID=prot_H-paniculata_contig10523.341.1|Name=mRNA_H-paniculata_contig10523.341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=503bp
MNYFGFRKISKQEKHSGDILNLTRRTNIKDGESNSAISVLEQPLSKYIEK
SGGCDHDDHGNSENGSDAIRKAGSEFKRKKPASDVNIGGHPRSAKRQTQP
LQDRKSNRSEDAPSMFHGDTDDRRDAGGSDNDDMGGIVNVSGWQRPLLSQ
SRAAAGNGDGKSVVLPFSAVECGVDGVKGGATTRSKGSSRWVAGKDMVTS
TSALADRKRNQSCREDEENFLYRDTAAFRNILTTVDVEVDVLYDGGDDDC
DMAKAPVTSAFDDSLSTFGGDSSKSIGIGGEQEDCDSDGDSQHRFVDCPI
TSISTGVHPFPPPVDTASSTVLDTCTWNRSPKLKLWGEAINSPTLSPRPV
LSRVSHNRQNQASFPPGRIWIPSSPLPLRSFHEDDIEFVTKDFGDCLLSD
YQMSEARVTGTDLSFEHDTMHNNDSMFLSNSGGGSIGGKGGGIENSSAAS
PKTEMGNWRASIEMNSGRGTTGVRSPTALPPTPASLSLQSPVQEVAPWLR
GL*

mRNA from alignment at H-paniculata_contig10523:4928..8687+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig10523.341.1 ID=mRNA_H-paniculata_contig10523.341.1|Name=mRNA_H-paniculata_contig10523.341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3760bp|location=Sequence derived from alignment at H-paniculata_contig10523:4928..8687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTACCGAGGTACTTCAGGCTGAGCAGCAAATTTTCTTGTTTCCAGCG
AAACATGAACTACTTCGGATTCCGGAAAATATCAAAGCAGGTGTGATTCA
GCCGTCAGTTTTGAAATAAGTGCCCTTCGCGTAGAGAGACATCGTGTGTG
GGACTGTTGCATGCGTAGGGCCGTTGACCGTGTGAAGTAACTAATATAAT
GGTGTTTTGCATTTTGATGTGCTCCTAAAGATTGGACTTCGCACACAGCA
CGGAAATATCTGTTCTAGTGTTATGGTAAATAGATGCGGACTGCATCGTC
TTGCGCCCGGCAAAAGAGGTTTCCTCTATCCAAATATTCAGACAACAACG
CTCGGGTGAACAACGTCGAGGTGTACCTTCTATGCCTTGCGGTGTGAAGC
GTTTATTTCACGTAGGAGAGTGATGTGATGTCGCTCGTAAAGGGTATGCT
GTGTAGCTGAAATGCAGATATATCCTGCCTCGTTCAGTATCAGCGCCAGA
ACGATGAACCATAGACCTCTTTCACGGTATCGTCGAGGAACCAACACCCC
CCTTTAGATGCCCTCTCACTCGATTCGCGTATGTTGCTCTTCGCATATTC
CCTGCATCCCACTCATTGCATGTGTGCTCATTCTTTGATGTTGTGTCCGG
TCCCACTGGAATACTGGGATTGACAAGCCTTTGGTTTTTTACAACTACAC
CCTCAAGGTGAGGGGCCCTTCGACACAGTCGGCAAGACAGTATCTATTGT
ATTGCGCAAACGACGTGCATCATTCCCTCCAGAATAACACATTCACTGCC
GGAGTGCACCGCCGTTTATGCTTCACACTTGATGTGGCTCATGATACGAA
CCTGTTAGATATTTTTTCTTCCGAAGCCTCTAGGCTAGGTTCCCATATCC
GTACATCACGGTCTTTGTCGATGATGTTGGCCGGAACCAGAGCTCAAGAT
TTTTACAGTACCCCCCGTGCGAAAGGCGTCGGCATTCTCGCAGAATATTC
CCAATCTAGCATACACCCGTTTATCCAACCCAACCTCAATGCACCGAAAC
AGCCCGTCGTCATCTCTTGCTCACAGGAAAAGCATTCTGGAGACATCCTT
AACCTTACACGCCGCACCAACATCAAAGACGGCGAGTCGAATAGCGCTAT
CTCCGTCTTGGAGCAGCCGCTGTCCAAGTACATCGAGAAAAGTGGTGGTT
GTGACCACGACGACCATGGGAATAGCGAAAATGGCAGCGATGCGATCAGG
AAAGCTGGTTCAGAGTTTAAACGCAAGAAACCCGCCAGCGATGTCAACAT
CGGTGGCCATCCGAGAAGTGCTAAACGCCAGACGCAGCCTCTGCAAGACA
GGAAGAGCAATCGATCAGAGGATGCCCCGTCAATGTTCCATGGCGATACC
GACGACCGCCGTGATGCGGGTGGATCGGACAACGACGACATGGGGGGTAT
TGTCAATGTATCCGGCTGGCAGCGCCCTCTCTTGTCACAAAGCCGTGCAG
CTGCCGGCAATGGCGACGGAAAGTCTGTTGTACTGCCTTTTTCCGCTGTT
GAATGTGGAGTCGATGGGGTGAAAGGTGGTGCAACGACCCGCAGCAAAGG
CAGTAGTCGGTGGGTGGCGGGCAAAGATATGGTGACCAGCACTAGTGCCT
TGGCTGATCGGAAACGAAACCAATCATGCCGGGAAGATGAAGAGAACTTC
CTTTACAGAGATACCGCGGCGTTTCGAAATATCTTGACGACGGTCGACGT
AGAGGTCGATGTTCTCTATGACGGTGGCGATGACGACTGCGACATGGCAA
AAGCGCCAGTCACATCTGCATTTGACGATAGTTTGTCTACATTCGGTGGC
GATAGCAGCAAGAGCATTGGCATCGGCGGTGAGCAAGAAGACTGCGATAG
CGATGGCGATAGCCAGCATCGATTTGTTGATTGTCCAATCACAAGCATCT
CTACCGGCGTGCATCCTTTCCCACCACCAGTGGATACCGCGTCGTCAACA
GTACTTGACACCTGCACATGGAATCGTTCCCCGAAACTGAAGCTGTGGGG
GGAAGCAATCAATTCTCCAACTCTGTCCCCGCGGCCTGTACTGTCCCGTG
TATCCCACAATCGCCAGAACCAGGCATCGTTTCCCCCTGGTAGGATTTGG
ATACCCTCCTCTCCTCTACCTCTGCGTTCCTTCCATGAGGACGATATTGA
GTTTGTGACAAAAGATTTCGGCGATTGTTTGCTGAGTGACTATCAGATGT
CGGAGGCAAGGGTGACGGGGACGGATTTGTCTTTCGAGCACGATACAATG
CACAACAACGATTCGATGTTTCTCTCCAACAGCGGTGGCGGTAGCATTGG
CGGAAAAGGAGGGGGGATTGAAAATTCTAGCGCCGCGAGCCCGAAGACAG
AAATGGGAAATTGGAGGGCGAGCATCGAGATGAACAGTGGGCGAGGTACC
ACTGGTGTGAGGTCACCTACAGCATTGCCGCCCACCCCTGCTTCTCTTTC
CCTTCAGAGCCCTGTGCAAGAGGTCGCGCCTTGGCTTCGTGGGCTCTGAG
CAATGGCCGACACATATTTAGTATTCTATTGGCGAGTATCCAGTGCCATG
TCAGATTTTGGATGAGCTGTCGCCCTTCTTTGGAAGAGAGACAGAATTAC
TCAGGTTGAGTTCTTTCGAAGCATTTCAATGTGATGCATGAGGGGAAGAA
GCCCTTGCTGAAAACCAAGTGTCGAGCAGACTTCAAGACACGCGTCAGTC
ATCGGTATGCGTACCCTAGATATGGTGGTCTGCATCGCGCCTTATGTTTA
TATCAATGCTCCCGCTTTTGACCGTCTCTGGGATGGGATGTCGTAGTTTA
CGAAGTATATCACCCTTTGCGGTAAAAGTTTTCACCCGAGTTTCTCAAGC
CTTGTCATGGACGGGTTCGCACGACATTGTAGGGTCTTCCTTCTCGAGAA
GATCTTTTCTCGAGAAAACTGAGTTTGGAAAAACTTACCCCCGAGGTGAT
CTACATTAAACCCTTATAGATCGTAGTTCTGAAAGTTGTTACAAGTCGTG
TAATGCTGGTCTTCGTATTTATTGTCTTGAACCTATGGTTTTAGGTAGAG
GGAGTTTGCGTGAGCTCTATGCCCCTGCCGCCCACCAAACGGCGCATGAT
ACGTATTGAAGGATGGATGTCCCCAACTCTCTACACAGTATACGTTTGTC
CTTGGATTAGCGCGCTGAAGAGCTCGTGTCGTGGTCAGTAGATTGTGCTC
GGGGGGTCATTCAGTAGCGAGGGGTACATCGAAAGCAATAGGGCATCCTG
GTATATCGTTCGTCATTGGTCTCAGGCACATCTGCTGCCGGGCTGTTCTC
CCTTGTTGTGTAGCATTGTGTAGGCTACTTGGACCGAACAAAACCAGGAT
CAGACCGCTCGTGTTGATTCATGCTGCGGGGTTTTCAGTGTTGAGTGCTT
TTTCAGTGATGGCTTCTGCACATGAGGGCGGGAAAACATTCCAGTTACCA
CAAGCTAGAGGAGCTTATGATGGTGTGTGTATATATCATGTGAATATAGA
AACGAAGGCTATCTTGGGTTATGTATCTGCGTGTCACATGTTGTAGGTGT
TTTTATATCATTTGTTGTGTACGAGTGCTTGTCATCTTGGTAGAATTCGT
AATTCAGTATGTACTCAAGAAGATATGTATGGAGTTGTGTTGATTCACGG
CAGAGAGCTTGGAGCTCCCTTGTGACAGTATTATGCCTCGGCTGTTTCGG
CAACAGCAGC

Coding sequence (CDS) from alignment at H-paniculata_contig10523:4928..8687+

>mRNA_H-paniculata_contig10523.341.1 ID=mRNA_H-paniculata_contig10523.341.1|Name=mRNA_H-paniculata_contig10523.341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at H-paniculata_contig10523:4928..8687+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTACTTCGGATTCCGGAAAATATCAAAGCAGATGAACTACTTCGG
ATTCCGGAAAATATCAAAGCAGGAAAAGCATTCTGGAGACATCCTTAACC
TTACACGCCGCACCAACATCAAAGACGGCGAGTCGAATAGCGCTATCTCC
GTCTTGGAGCAGCCGCTGTCCAAGTACATCGAGAAAAGTGGTGGTTGTGA
CCACGACGACCATGGGAATAGCGAAAATGGCAGCGATGCGATCAGGAAAG
CTGGTTCAGAGTTTAAACGCAAGAAACCCGCCAGCGATGTCAACATCGGT
GGCCATCCGAGAAGTGCTAAACGCCAGACGCAGCCTCTGCAAGACAGGAA
GAGCAATCGATCAGAGGATGCCCCGTCAATGTTCCATGGCGATACCGACG
ACCGCCGTGATGCGGGTGGATCGGACAACGACGACATGGGGGGTATTGTC
AATGTATCCGGCTGGCAGCGCCCTCTCTTGTCACAAAGCCGTGCAGCTGC
CGGCAATGGCGACGGAAAGTCTGTTGTACTGCCTTTTTCCGCTGTTGAAT
GTGGAGTCGATGGGGTGAAAGGTGGTGCAACGACCCGCAGCAAAGGCAGT
AGTCGGTGGGTGGCGGGCAAAGATATGGTGACCAGCACTAGTGCCTTGGC
TGATCGGAAACGAAACCAATCATGCCGGGAAGATGAAGAGAACTTCCTTT
ACAGAGATACCGCGGCGTTTCGAAATATCTTGACGACGGTCGACGTAGAG
GTCGATGTTCTCTATGACGGTGGCGATGACGACTGCGACATGGCAAAAGC
GCCAGTCACATCTGCATTTGACGATAGTTTGTCTACATTCGGTGGCGATA
GCAGCAAGAGCATTGGCATCGGCGGTGAGCAAGAAGACTGCGATAGCGAT
GGCGATAGCCAGCATCGATTTGTTGATTGTCCAATCACAAGCATCTCTAC
CGGCGTGCATCCTTTCCCACCACCAGTGGATACCGCGTCGTCAACAGTAC
TTGACACCTGCACATGGAATCGTTCCCCGAAACTGAAGCTGTGGGGGGAA
GCAATCAATTCTCCAACTCTGTCCCCGCGGCCTGTACTGTCCCGTGTATC
CCACAATCGCCAGAACCAGGCATCGTTTCCCCCTGGTAGGATTTGGATAC
CCTCCTCTCCTCTACCTCTGCGTTCCTTCCATGAGGACGATATTGAGTTT
GTGACAAAAGATTTCGGCGATTGTTTGCTGAGTGACTATCAGATGTCGGA
GGCAAGGGTGACGGGGACGGATTTGTCTTTCGAGCACGATACAATGCACA
ACAACGATTCGATGTTTCTCTCCAACAGCGGTGGCGGTAGCATTGGCGGA
AAAGGAGGGGGGATTGAAAATTCTAGCGCCGCGAGCCCGAAGACAGAAAT
GGGAAATTGGAGGGCGAGCATCGAGATGAACAGTGGGCGAGGTACCACTG
GTGTGAGGTCACCTACAGCATTGCCGCCCACCCCTGCTTCTCTTTCCCTT
CAGAGCCCTGTGCAAGAGGTCGCGCCTTGGCTTCGTGGGCTCTGAGAAAA
GCATTCTGGAGACATCCTTAACCTTACACGCCGCACCAACATCAAAGACG
GCGAGTCGAATAGCGCTATCTCCGTCTTGGAGCAGCCGCTGTCCAAGTAC
ATCGAGAAAAGTGGTGGTTGTGACCACGACGACCATGGGAATAGCGAAAA
TGGCAGCGATGCGATCAGGAAAGCTGGTTCAGAGTTTAAACGCAAGAAAC
CCGCCAGCGATGTCAACATCGGTGGCCATCCGAGAAGTGCTAAACGCCAG
ACGCAGCCTCTGCAAGACAGGAAGAGCAATCGATCAGAGGATGCCCCGTC
AATGTTCCATGGCGATACCGACGACCGCCGTGATGCGGGTGGATCGGACA
ACGACGACATGGGGGGTATTGTCAATGTATCCGGCTGGCAGCGCCCTCTC
TTGTCACAAAGCCGTGCAGCTGCCGGCAATGGCGACGGAAAGTCTGTTGT
ACTGCCTTTTTCCGCTGTTGAATGTGGAGTCGATGGGGTGAAAGGTGGTG
CAACGACCCGCAGCAAAGGCAGTAGTCGGTGGGTGGCGGGCAAAGATATG
GTGACCAGCACTAGTGCCTTGGCTGATCGGAAACGAAACCAATCATGCCG
GGAAGATGAAGAGAACTTCCTTTACAGAGATACCGCGGCGTTTCGAAATA
TCTTGACGACGGTCGACGTAGAGGTCGATGTTCTCTATGACGGTGGCGAT
GACGACTGCGACATGGCAAAAGCGCCAGTCACATCTGCATTTGACGATAG
TTTGTCTACATTCGGTGGCGATAGCAGCAAGAGCATTGGCATCGGCGGTG
AGCAAGAAGACTGCGATAGCGATGGCGATAGCCAGCATCGATTTGTTGAT
TGTCCAATCACAAGCATCTCTACCGGCGTGCATCCTTTCCCACCACCAGT
GGATACCGCGTCGTCAACAGTACTTGACACCTGCACATGGAATCGTTCCC
CGAAACTGAAGCTGTGGGGGGAAGCAATCAATTCTCCAACTCTGTCCCCG
CGGCCTGTACTGTCCCGTGTATCCCACAATCGCCAGAACCAGGCATCGTT
TCCCCCTGGTAGGATTTGGATACCCTCCTCTCCTCTACCTCTGCGTTCCT
TCCATGAGGACGATATTGAGTTTGTGACAAAAGATTTCGGCGATTGTTTG
CTGAGTGACTATCAGATGTCGGAGGCAAGGGTGACGGGGACGGATTTGTC
TTTCGAGCACGATACAATGCACAACAACGATTCGATGTTTCTCTCCAACA
GCGGTGGCGGTAGCATTGGCGGAAAAGGAGGGGGGATTGAAAATTCTAGC
GCCGCGAGCCCGAAGACAGAAATGGGAAATTGGAGGGCGAGCATCGAGAT
GAACAGTGGGCGAGGTACCACTGGTGTGAGGTCACCTACAGCATTGCCGC
CCACCCCTGCTTCTCTTTCCCTTCAGAGCCCTGTGCAAGAGGTCGCGCCT
TGGCTTCGTGGGCTCTGA

mRNA_H-paniculata_contig10523.341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

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POSITION

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