mRNA_H-paniculata_contig15886.3409.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15886.3409.1
Unique NamemRNA_H-paniculata_contig15886.3409.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: D7FMQ6_ECTSI (Dihydroflavonol-4-reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-14
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   25 GGKLKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAVRK 156
            GG LKRFVLLSSVGV R D FPF ILNAFGVLDAKAKGE AVRK
Sbjct:  189 GGSLKRFVLLSSVGVTRADKFPFVILNAFGVLDAKAKGEAAVRK 232
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A7S2FU92_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU92_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.350e-13
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   25 GGKLKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAVR 153
            GGK KR VL+SS+GVERR +FPF ILNA GVLDAKAKGE AVR
Sbjct:   58 GGKAKRLVLMSSIGVERRKDFPFVILNAAGVLDAKAKGEAAVR 100
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A1Z5KP62_FISSO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP62_FISSO)

HSP 1 Score: 65.5 bits (158), Expect = 3.250e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   34 LKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAVRK 156
            LKR VL++S+GV+R D  PFFILN FGVLDAK KGEEAVRK
Sbjct:  171 LKRIVLVTSIGVDRTDQMPFFILNLFGVLDAKKKGEEAVRK 211
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A7S2SSE5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSE5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.790e-10
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   22 SGGKLKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAVRK 156
            +G   KR VL+SS+GVERR  FPFFILNA GVLDAKA+GE A+R+
Sbjct:  111 AGVPTKRAVLMSSIGVERRSGFPFFILNAAGVLDAKAEGEAALRE 155
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A812R312_SYMPI (Probable acetate kinase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812R312_SYMPI)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   22 SGGKLKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAVRK 156
            + G+ +RFVL+SS+GV RRD FP+ ILN  GVLDAKAKGE AVR+
Sbjct:  429 ASGQKRRFVLMSSIGVTRRDGFPYSILNGGGVLDAKAKGEAAVRE 473
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A6I5NLP8_9CYAN (SDR family oxidoreductase (Fragment) n=1 Tax=Leptolyngbya sp. SIO4C1 TaxID=2607770 RepID=A0A6I5NLP8_9CYAN)

HSP 1 Score: 62.0 bits (149), Expect = 3.740e-10
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   34 LKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAVRK 156
            L+RFV +SS GVERR  FPF +LNAFGVLDAKA+GE A+R+
Sbjct:  144 LQRFVFVSSCGVERRQQFPFSLLNAFGVLDAKAEGEAAIRQ 184
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A1Q9EJJ4_SYMMI (Probable acetate kinase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EJJ4_SYMMI)

HSP 1 Score: 62.4 bits (150), Expect = 5.220e-10
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   22 SGGKLKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAVRK 156
            + G  +RFVL+SS+GV RRD FP+ ILN  GVLDAKAKGE AVR+
Sbjct:  527 ASGPKRRFVLMSSIGVTRRDGFPYSILNGGGVLDAKAKGEAAVRE 571
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A812JE66_9DINO (Probable acetate kinase n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JE66_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 5.230e-10
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   22 SGGKLKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAVRK 156
            + G  +RFVL+SS+GV RRD FP+ ILN  GVLDAKAKGE AVR+
Sbjct: 1217 ASGPKRRFVLMSSIGVTRRDGFPYSILNGGGVLDAKAKGEAAVRE 1261
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A8J7HY61_9NOST (SDR family oxidoreductase n=1 Tax=Dendronalium phyllosphericum CENA369 TaxID=1725256 RepID=A0A8J7HY61_9NOST)

HSP 1 Score: 61.6 bits (148), Expect = 6.770e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   34 LKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAV 150
            LKRFV +SS GV R+D FPF ILNAFGVLDAK KGEEA+
Sbjct:  139 LKRFVFVSSSGVLRKDKFPFSILNAFGVLDAKQKGEEAI 177
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BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Match: A0A6P0ZK02_9CYAN (NAD(P)H-binding protein n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZK02_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 8.260e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   34 LKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAV 150
            L+RFV +SS GVER+D FPF ILN FGVLDAK KGE A+
Sbjct:   16 LQRFVFVSSCGVERKDQFPFSILNKFGVLDAKQKGENAI 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15886.3409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ6_ECTSI1.150e-1486.36Dihydroflavonol-4-reductase n=2 Tax=Ectocarpus Tax... [more]
A0A7S2FU92_9STRA6.350e-1379.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1Z5KP62_FISSO3.250e-1175.61NAD(P)-bd_dom domain-containing protein n=1 Tax=Fi... [more]
A0A7S2SSE5_9STRA1.790e-1068.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812R312_SYMPI2.790e-1066.67Probable acetate kinase n=2 Tax=Symbiodinium TaxID... [more]
A0A6I5NLP8_9CYAN3.740e-1070.73SDR family oxidoreductase (Fragment) n=1 Tax=Lepto... [more]
A0A1Q9EJJ4_SYMMI5.220e-1066.67Probable acetate kinase n=2 Tax=Symbiodinium TaxID... [more]
A0A812JE66_9DINO5.230e-1066.67Probable acetate kinase n=1 Tax=Symbiodinium sp. C... [more]
A0A8J7HY61_9NOST6.770e-1076.92SDR family oxidoreductase n=1 Tax=Dendronalium phy... [more]
A0A6P0ZK02_9CYAN8.260e-1071.79NAD(P)H-binding protein n=2 Tax=unclassified Sphae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15886contigH-paniculata_contig15886:5224..5382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog2880.D7FMQ6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Ec32 ortholog descriptionDihydroflavonol-4-reductase
Ec32 orthologEc-23_001220.1
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929267.5317516-CDS-H-paniculata_contig15886:5223..53821622929267.5317516-CDS-H-paniculata_contig15886:5223..5382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15886 5224..5382 +
1691480794.0145516-CDS-H-paniculata_contig15886:5223..53821691480794.0145516-CDS-H-paniculata_contig15886:5223..5382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15886 5224..5382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15886.3409.1prot_H-paniculata_contig15886.3409.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15886 5224..5382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15886.3409.1

>prot_H-paniculata_contig15886.3409.1 ID=prot_H-paniculata_contig15886.3409.1|Name=mRNA_H-paniculata_contig15886.3409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MFDHQLFSGGKLKRFVLLSSVGVERRDNFPFFILNAFGVLDAKAKGEEAV
RK*
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mRNA from alignment at H-paniculata_contig15886:5224..5382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15886.3409.1 ID=mRNA_H-paniculata_contig15886.3409.1|Name=mRNA_H-paniculata_contig15886.3409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig15886:5224..5382+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACCATCAACTGTTTAGCGGCGGGAAGCTGAAACGGTTCGTGCT
GCTGTCGTCCGTGGGCGTGGAGCGGCGAGATAATTTCCCATTCTTTATCT
TGAATGCGTTCGGGGTTCTGGACGCCAAGGCCAAAGGGGAAGAGGCCGTT
CGGAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15886:5224..5382+

>mRNA_H-paniculata_contig15886.3409.1 ID=mRNA_H-paniculata_contig15886.3409.1|Name=mRNA_H-paniculata_contig15886.3409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig15886:5224..5382+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACCATCAACTGTTTAGCGGCGGGAAGCTGAAACGGTTCGTGCT
GCTGTCGTCCGTGGGCGTGGAGCGGCGAGATAATTTCCCATTCTTTATCT
TGAATGCGTTCGGGGTTCTGGACGCCAAGGCCAAAGGGGAAGAGGCCGTT
CGGAAGTGAATGTTCGACCATCAACTGTTTAGCGGCGGGAAGCTGAAACG
GTTCGTGCTGCTGTCGTCCGTGGGCGTGGAGCGGCGAGATAATTTCCCAT
TCTTTATCTTGAATGCGTTCGGGGTTCTGGACGCCAAGGCCAAAGGGGAA
GAGGCCGTTCGGAAGTGA
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