mRNA_H-paniculata_contig15870.3403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15870.3403.1
Unique NamemRNA_H-paniculata_contig15870.3403.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15870.3403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15870contigH-paniculata_contig15870:1996..3771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size529
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15870.3403.1prot_H-paniculata_contig15870.3403.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15870 3361..3771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.9185789-UTR-H-paniculata_contig15870:1995..20751622929266.9185789-UTR-H-paniculata_contig15870:1995..2075Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15870 1996..2075 +
1691480793.7054017-UTR-H-paniculata_contig15870:1995..20751691480793.7054017-UTR-H-paniculata_contig15870:1995..2075Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15870 1996..2075 +
1622929266.932466-UTR-H-paniculata_contig15870:3323..33601622929266.932466-UTR-H-paniculata_contig15870:3323..3360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15870 3324..3360 +
1691480793.717136-UTR-H-paniculata_contig15870:3323..33601691480793.717136-UTR-H-paniculata_contig15870:3323..3360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15870 3324..3360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.9491565-CDS-H-paniculata_contig15870:3360..37711622929266.9491565-CDS-H-paniculata_contig15870:3360..3771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15870 3361..3771 +
1691480793.7268105-CDS-H-paniculata_contig15870:3360..37711691480793.7268105-CDS-H-paniculata_contig15870:3360..3771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15870 3361..3771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15870.3403.1

>prot_H-paniculata_contig15870.3403.1 ID=prot_H-paniculata_contig15870.3403.1|Name=mRNA_H-paniculata_contig15870.3403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MQVTVSRCAASATQQTVHVIRRATFPPRIPADSAPCRRAKQAGISSTAWS
SDSWADFRTSEHLTSAHASSSNPPSRKFDVADTQQPSFRIQPGMGLLRNL
SRPSSSSDGHRDERVGRRRSSEVGRGIREGRGGRGTR
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mRNA from alignment at H-paniculata_contig15870:1996..3771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15870.3403.1 ID=mRNA_H-paniculata_contig15870.3403.1|Name=mRNA_H-paniculata_contig15870.3403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1776bp|location=Sequence derived from alignment at H-paniculata_contig15870:1996..3771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGATCTGTCCAGCGCGCTGTTCGCCTCTAGTTCAGCCAGTAAAGCAC
CGTGAGCTGTCGCTCAATTTTCGATCAAAGGTGATGATGTTTTTTCGGAT
GAAGATAGTGCAGCTGACTGGTAATCATGGCGGACACGCTGTGTGTATGG
CCGGGACGGGACTGTGATACGCTCTGACTGTCTGTAATGTCCATTTCCGA
TCATGCTCTTTATACCCTTTTGTGTAATACCATGTCCATGAGAGTGGTTG
GCGCAGATGTCACAAGAGACAGCACATCCTAGGCATAAGGCCCCCATTAT
GTTATACTGCAATAGGCTAGAGCCCAGAGGTGCTACAAGGCCCCAGGCGT
TATTCGTTGACGCTCTGGCTTTACATGCCCACATAATAGTAGTACGTACC
TACAGCGGAGGGCAGTAATGGACATTCAAGTCCACCCTCACCCTGGAAAC
GAAAGTACCGAAAGTCAGTGCCAGCAGTCACAATTTACTAATACGTTGCT
GTACAGGACATAGAAAGTACATCACCGTGTATTACTGCACCAGTTGCTTG
TACCGTAGGTTCCTTGGCTCGACTCGCGTGGGGCGTCACCTGGGGATGCC
GCTGTCGAAGCGAACTCAAGTGTCACGGCGTAGTTGTGCCACCATAGTCC
TGCACAAACTGTAAGTATAGACTCTACAGCAGGTGGTTGAAAGTCATGCA
TTGACAAATTCACAGCCTCCAGCTATACCTGATGCATGTGGGATTCGCCA
TGCCCTACCCTCCACTCCACTTCTACCGCCCCGTTGTTCGGGTCAGGAAT
ATAGTATTGTCGGGTTACGTTGAGCTCTGATTTCTGGCTGCTTGCACACC
CCTTGTATCGGATACAAACATTCCTCCACTATTGAGATTCTGTGGAGACA
GACCCTCAGGTTATATCTTCAGAGCGGAAGCGCCCCCATGACGGGCGGCG
GCTGCAACTGTGGGAGGGGGGGCATGGAGGGGCGGGGAGTCTTGAGAATT
GACACGTAGGCGACTAGTTCTGTGTGAGTTCGTGCGCATGCATAAGTCAA
GCCGATCACGAGAGGGCCAACTTTTTAGCGGACTACGGTATAGAAGTGAG
AAAAACAAAGTTCGTCGCTAACACCGTGGATTTCCAGATGACCCCCCTGA
ATATCCTTTTTCAGAGAGTGTGGATTCCAGATTATGCGTGTGGCCTGTGA
TTGTGCCGTGTCTGTGTCTTGACCCACGTGATACTCTCACCAACAGCTTA
CATGTGTTCCACCCTCCCCCCCTCACGGGCCTCCGCATCTCCATTTTTTC
CCCTTTTTTTGGTTCGCTATTTCTCCAGCGGACCTTTGTTCGTACTCCCG
CCTGTTTGTGTCGCCATGCAGGTCACAGTCTCCCGGTGCGCTGCCAGTGC
TACCCAACAGACAGTCCACGTCATTCGACGAGCTACGTTCCCCCCAAGAA
TACCGGCGGATTCCGCTCCCTGTCGGCGAGCTAAGCAGGCGGGAATCTCG
TCCACCGCATGGTCTTCTGACAGCTGGGCTGACTTCAGAACCTCCGAACA
CCTAACCTCTGCCCATGCTTCTTCCAGCAATCCTCCCAGCAGAAAATTTG
ATGTAGCGGATACACAGCAACCGTCCTTCCGAATCCAGCCCGGGATGGGT
TTGCTAAGAAACCTTTCTCGCCCGTCATCCTCTAGCGACGGTCATCGTGA
TGAGCGCGTAGGCCGGAGGCGGTCGTCCGAGGTGGGCAGGGGTATCCGCG
AAGGTAGAGGTGGGAGGGGAACCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig15870:1996..3771+

>mRNA_H-paniculata_contig15870.3403.1 ID=mRNA_H-paniculata_contig15870.3403.1|Name=mRNA_H-paniculata_contig15870.3403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig15870:1996..3771+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTCACAGTCTCCCGGTGCGCTGCCAGTGCTACCCAACAGACAGT
CCACGTCATTCGACGAGCTACGTTCCCCCCAAGAATACCGGCGGATTCCG
CTCCCTGTCGGCGAGCTAAGCAGGCGGGAATCTCGTCCACCGCATGGTCT
TCTGACAGCTGGGCTGACTTCAGAACCTCCGAACACCTAACCTCTGCCCA
TGCTTCTTCCAGCAATCCTCCCAGCAGAAAATTTGATGTAGCGGATACAC
AGCAACCGTCCTTCCGAATCCAGCCCGGGATGGGTTTGCTAAGAAACCTT
TCTCGCCCGTCATCCTCTAGCGACGGTCATCGTGATGAGCGCGTAGGCCG
GAGGCGGTCGTCCGAGGTGGGCAGGGGTATCCGCGAAGGTAGAGGTGGGA
GGGGAACCAGGATGCAGGTCACAGTCTCCCGGTGCGCTGCCAGTGCTACC
CAACAGACAGTCCACGTCATTCGACGAGCTACGTTCCCCCCAAGAATACC
GGCGGATTCCGCTCCCTGTCGGCGAGCTAAGCAGGCGGGAATCTCGTCCA
CCGCATGGTCTTCTGACAGCTGGGCTGACTTCAGAACCTCCGAACACCTA
ACCTCTGCCCATGCTTCTTCCAGCAATCCTCCCAGCAGAAAATTTGATGT
AGCGGATACACAGCAACCGTCCTTCCGAATCCAGCCCGGGATGGGTTTGC
TAAGAAACCTTTCTCGCCCGTCATCCTCTAGCGACGGTCATCGTGATGAG
CGCGTAGGCCGGAGGCGGTCGTCCGAGGTGGGCAGGGGTATCCGCGAAGG
TAGAGGTGGGAGGGGAACCAGG
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