mRNA_H-paniculata_contig15865.3400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI) HSP 1 Score: 94.0 bits (232), Expect = 3.160e-20 Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query: 1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSIGV 297
+F L G ++W SR+Q++VT S+TEA+Y+AA A K+ V LR LL +G+ C T L+ +N+ AI ++K H RTKHI VR+H IR+ + +I V
Sbjct: 1480 LFSLASGPVTWSSRRQKIVTLSTTEAEYIAASSAAKEAVWLRNLLDEVGYRCDSPTVLYVDNQSAIKIAKNPEFHERTKHIDVRYHHIRKMVENAAIQV 1578
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A8H7CY76_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H7CY76_9AGAR) HSP 1 Score: 90.9 bits (224), Expect = 1.620e-19 Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 4 FKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIR 279
F L +GAISW S+KQ +VT SSTE++YVA A K+ + LR+LL + G TTLF +N+ AI LS+ S H RTKHI +R+H IR+ IR
Sbjct: 233 FFLGNGAISWSSKKQPIVTLSSTESEYVALTHASKELIWLRKLLSELRLLPTGPTTLFCDNQGAIVLSRDSTYHARTKHIDIRFHFIRQTIR 324
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A2R6P8J5_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6P8J5_9APHY) HSP 1 Score: 86.7 bits (213), Expect = 2.480e-19 Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1
Query: 1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSI 291
VF ++ GA+SW S+KQ+LV S+TEA+YVA A K+ + +R L+G + TTLF +++ AI+L+K H RTKHI +R+H IR + + S+
Sbjct: 34 VFLVDSGAVSWSSKKQELVPLSTTEAEYVAVTHAAKEAMWIRRLIGEVYRPLEEPTTLFSDSQTAIALTKDGQYHARTKHIDIRYHFIRYVVEDGSL 130
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A139WJX6_TRICA (Copia protein-like Protein n=1 Tax=Tribolium castaneum TaxID=7070 RepID=A0A139WJX6_TRICA) HSP 1 Score: 91.3 bits (225), Expect = 2.650e-19 Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIRE 270
VFKL DGAI+WCSR+Q+ ++ S+TEA+YVAA EA K+ V + LL +G C G L +N+ AI L K H RTKHI VR+H +RE
Sbjct: 510 VFKLGDGAITWCSRRQRCISLSTTEAEYVAASEATKEAVWISGLLSEVGEKC-GGVALCVDNQSAIKLVKNPMFHKRTKHIDVRYHFVRE 598
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY) HSP 1 Score: 91.3 bits (225), Expect = 2.780e-19 Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIR 267
VF ++ GA+SW S+KQ+LVT S+TEA+YVAA A K+ + +R+LLG + G TTL+ +++ AI+L+K H RTKHI +R+H IR
Sbjct: 1349 VFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRQLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIR 1437
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI) HSP 1 Score: 90.9 bits (224), Expect = 3.770e-19 Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSI 291
VF ++ GA+SW S+KQ+LVT S+ E++YVAA A K+ + LR L+G + +T L+ +N+ AI+L+K H RTKHI VR+H IR +I SI
Sbjct: 1182 VFLVDGGAVSWASKKQELVTLSTAESEYVAATHAAKEAIWLRRLIGEVFGPLSNATMLYSDNQAAIALTKDGSYHARTKHIDVRYHFIRYYIDAGSI 1278
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY) HSP 1 Score: 90.5 bits (223), Expect = 4.000e-19 Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIR 267
VF ++ GA+SW S+KQ+LVT S+TEA+YVAA A K+ + +R LLG + G TTL+ +++ AI+L+K H RTKHI +R+H IR
Sbjct: 332 VFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIR 420
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A0J7KE66_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KE66_LASNI) HSP 1 Score: 90.1 bits (222), Expect = 6.770e-19 Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 1
Query: 4 FKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSIGVE 300
F L +G ++W S++Q LVT S+TE++YVAA A ++ + LR LL +G+ C +T ++ +N+ AI L + H RTKHI +R+H IRE + + I VE
Sbjct: 524 FMLCNGPVTWSSQRQNLVTLSTTESEYVAAASAAREAIWLRNLLKEVGYPCANATVIYIDNQSAIKLVRNPEYHKRTKHIDIRFHYIREKVEAKEIEVE 622
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A409X4K8_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409X4K8_9AGAR) HSP 1 Score: 90.1 bits (222), Expect = 6.910e-19 Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 1
Query: 1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSI 291
VF ++ GA+SW S+KQ+LVT S+TEA+YVAA A K+ V LR L+ I TTL+ +N+ AI+L+ G H RTKHI +R+H IR I SI
Sbjct: 764 VFIVDGGAVSWASKKQELVTLSTTEAEYVAATHAAKEAVWLRRLISEILSPISEPTTLYGDNQSAIALAHGGQYHARTKHIDIRYHFIRYIIEAGSI 860
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY) HSP 1 Score: 90.1 bits (222), Expect = 7.060e-19 Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 1
Query: 1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSI 291
VF ++ GA+SW S+KQ+LVT S+TEA+YVAA A K+ + +R L+G + TTLF +++ AI+L+K H RTKHI +R+H IR + + S+
Sbjct: 1349 VFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLIGEVYRPLEEPTTLFSDSQTAIALTKDGQYHARTKHIDIRYHFIRYVVEDGSL 1445 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15865.3400.1 >prot_H-paniculata_contig15865.3400.1 ID=prot_H-paniculata_contig15865.3400.1|Name=mRNA_H-paniculata_contig15865.3400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFback to top mRNA from alignment at H-paniculata_contig15865:2..307+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15865.3400.1 ID=mRNA_H-paniculata_contig15865.3400.1|Name=mRNA_H-paniculata_contig15865.3400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig15865:2..307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15865:2..307+ >mRNA_H-paniculata_contig15865.3400.1 ID=mRNA_H-paniculata_contig15865.3400.1|Name=mRNA_H-paniculata_contig15865.3400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig15865:2..307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |