mRNA_H-paniculata_contig15865.3400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15865.3400.1
Unique NamemRNA_H-paniculata_contig15865.3400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI)

HSP 1 Score: 94.0 bits (232), Expect = 3.160e-20
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSIGV 297
            +F L  G ++W SR+Q++VT S+TEA+Y+AA  A K+ V LR LL  +G+ C   T L+ +N+ AI ++K    H RTKHI VR+H IR+ +   +I V
Sbjct: 1480 LFSLASGPVTWSSRRQKIVTLSTTEAEYIAASSAAKEAVWLRNLLDEVGYRCDSPTVLYVDNQSAIKIAKNPEFHERTKHIDVRYHHIRKMVENAAIQV 1578          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A8H7CY76_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H7CY76_9AGAR)

HSP 1 Score: 90.9 bits (224), Expect = 1.620e-19
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    4 FKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIR 279
            F L +GAISW S+KQ +VT SSTE++YVA   A K+ + LR+LL  +     G TTLF +N+ AI LS+ S  H RTKHI +R+H IR+ IR
Sbjct:  233 FFLGNGAISWSSKKQPIVTLSSTESEYVALTHASKELIWLRKLLSELRLLPTGPTTLFCDNQGAIVLSRDSTYHARTKHIDIRFHFIRQTIR 324          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A2R6P8J5_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6P8J5_9APHY)

HSP 1 Score: 86.7 bits (213), Expect = 2.480e-19
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSI 291
            VF ++ GA+SW S+KQ+LV  S+TEA+YVA   A K+ + +R L+G +       TTLF +++ AI+L+K    H RTKHI +R+H IR  + + S+
Sbjct:   34 VFLVDSGAVSWSSKKQELVPLSTTEAEYVAVTHAAKEAMWIRRLIGEVYRPLEEPTTLFSDSQTAIALTKDGQYHARTKHIDIRYHFIRYVVEDGSL 130          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A139WJX6_TRICA (Copia protein-like Protein n=1 Tax=Tribolium castaneum TaxID=7070 RepID=A0A139WJX6_TRICA)

HSP 1 Score: 91.3 bits (225), Expect = 2.650e-19
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIRE 270
            VFKL DGAI+WCSR+Q+ ++ S+TEA+YVAA EA K+ V +  LL  +G  C G   L  +N+ AI L K    H RTKHI VR+H +RE
Sbjct:  510 VFKLGDGAITWCSRRQRCISLSTTEAEYVAASEATKEAVWISGLLSEVGEKC-GGVALCVDNQSAIKLVKNPMFHKRTKHIDVRYHFVRE 598          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 91.3 bits (225), Expect = 2.780e-19
Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIR 267
            VF ++ GA+SW S+KQ+LVT S+TEA+YVAA  A K+ + +R+LLG +     G TTL+ +++ AI+L+K    H RTKHI +R+H IR
Sbjct: 1349 VFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRQLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIR 1437          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 90.9 bits (224), Expect = 3.770e-19
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSI 291
            VF ++ GA+SW S+KQ+LVT S+ E++YVAA  A K+ + LR L+G +      +T L+ +N+ AI+L+K    H RTKHI VR+H IR +I   SI
Sbjct: 1182 VFLVDGGAVSWASKKQELVTLSTAESEYVAATHAAKEAIWLRRLIGEVFGPLSNATMLYSDNQAAIALTKDGSYHARTKHIDVRYHFIRYYIDAGSI 1278          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 90.5 bits (223), Expect = 4.000e-19
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIR 267
            VF ++ GA+SW S+KQ+LVT S+TEA+YVAA  A K+ + +R LLG +     G TTL+ +++ AI+L+K    H RTKHI +R+H IR
Sbjct:  332 VFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIR 420          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A0J7KE66_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KE66_LASNI)

HSP 1 Score: 90.1 bits (222), Expect = 6.770e-19
Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    4 FKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSIGVE 300
            F L +G ++W S++Q LVT S+TE++YVAA  A ++ + LR LL  +G+ C  +T ++ +N+ AI L +    H RTKHI +R+H IRE +  + I VE
Sbjct:  524 FMLCNGPVTWSSQRQNLVTLSTTESEYVAAASAAREAIWLRNLLKEVGYPCANATVIYIDNQSAIKLVRNPEYHKRTKHIDIRFHYIREKVEAKEIEVE 622          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A409X4K8_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409X4K8_9AGAR)

HSP 1 Score: 90.1 bits (222), Expect = 6.910e-19
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSI 291
            VF ++ GA+SW S+KQ+LVT S+TEA+YVAA  A K+ V LR L+  I       TTL+ +N+ AI+L+ G   H RTKHI +R+H IR  I   SI
Sbjct:  764 VFIVDGGAVSWASKKQELVTLSTTEAEYVAATHAAKEAVWLRRLISEILSPISEPTTLYGDNQSAIALAHGGQYHARTKHIDIRYHFIRYIIEAGSI 860          
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 90.1 bits (222), Expect = 7.060e-19
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGFGCRGSTTLFENNK*AISLSKGSGTHCRTKHIGVRWHGIREWIRERSI 291
            VF ++ GA+SW S+KQ+LVT S+TEA+YVAA  A K+ + +R L+G +       TTLF +++ AI+L+K    H RTKHI +R+H IR  + + S+
Sbjct: 1349 VFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLIGEVYRPLEEPTTLFSDSQTAIALTKDGQYHARTKHIDIRYHFIRYVVEDGSL 1445          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15865.3400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7KRG1_LASNI3.160e-2044.44Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A8H7CY76_9AGAR1.620e-1952.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A2R6P8J5_9APHY2.480e-1943.30Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A139WJX6_TRICA2.650e-1952.22Copia protein-like Protein n=1 Tax=Tribolium casta... [more]
A0A2R6PCF8_9APHY2.780e-1949.44Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A060SPD4_PYCCI3.770e-1946.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4K468_9APHY4.000e-1949.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7KE66_LASNI6.770e-1942.42Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A409X4K8_9AGAR6.910e-1949.48Integrase catalytic domain-containing protein (Fra... [more]
A0A4S4K4Q2_9APHY7.060e-1945.36Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15865contigH-paniculata_contig15865:2..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score64.3
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.8033803-CDS-H-paniculata_contig15865:1..1931622929266.8033803-CDS-H-paniculata_contig15865:1..193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15865 2..193 +
1691480793.667135-CDS-H-paniculata_contig15865:1..1931691480793.667135-CDS-H-paniculata_contig15865:1..193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15865 2..193 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.8190546-UTR-H-paniculata_contig15865:193..3071622929266.8190546-UTR-H-paniculata_contig15865:193..307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15865 194..307 +
1691480793.6813557-UTR-H-paniculata_contig15865:193..3071691480793.6813557-UTR-H-paniculata_contig15865:193..307Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15865 194..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15865.3400.1prot_H-paniculata_contig15865.3400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15865 2..193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15865.3400.1

>prot_H-paniculata_contig15865.3400.1 ID=prot_H-paniculata_contig15865.3400.1|Name=mRNA_H-paniculata_contig15865.3400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
VFKLNDGAISWCSRKQQLVTWSSTEADYVAAGEAGKDTVHLRELLGSIGF
GCRGSTTLFENNK*
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mRNA from alignment at H-paniculata_contig15865:2..307+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15865.3400.1 ID=mRNA_H-paniculata_contig15865.3400.1|Name=mRNA_H-paniculata_contig15865.3400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig15865:2..307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTCAAACTAAACGATGGTGCGATAAGTTGGTGCTCTAGGAAGCAACA GTTAGTCACGTGGTCCAGTACAGAGGCAGACTACGTTGCTGCAGGAGAAG CGGGAAAGGATACGGTACATCTTAGGGAGTTACTAGGGTCGATAGGTTTC GGATGCAGGGGGAGCACGACATTGTTTGAGAACAACAAGTAAGCTATTAG TCTCAGTAAGGGATCTGGCACACACTGCAGGACAAAGCACATCGGAGTGC GCTGGCATGGAATTCGAGAGTGGATTCGGGAAAGGAGTATTGGCGTTGAA ATACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig15865:2..307+

>mRNA_H-paniculata_contig15865.3400.1 ID=mRNA_H-paniculata_contig15865.3400.1|Name=mRNA_H-paniculata_contig15865.3400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig15865:2..307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTCAAACTAAACGATGGTGCGATAAGTTGGTGCTCTAGGAAGCAACA
GTTAGTCACGTGGTCCAGTACAGAGGCAGACTACGTTGCTGCAGGAGAAG
CGGGAAAGGATACGGTACATCTTAGGGAGTTACTAGGGTCGATAGGTTTC
GGATGCAGGGGGAGCACGACATTGTTTGAGAACAACAAGTAAGTATTCAA
ACTAAACGATGGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCA
CGTGGTCCAGTACAGAGGCAGACTACGTTGCTGCAGGAGAAGCGGGAAAG
GATACGGTACATCTTAGGGAGTTACTAGGGTCGATAGGTTTCGGATGCAG
GGGGAGCACGACATTGTTTGAGAACAACAAGTAA
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