mRNA_H-paniculata_contig15865.3401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15865.3401.1
Unique NamemRNA_H-paniculata_contig15865.3401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15865.3401.1 vs. uniprot
Match: A0A6H5KNS3_9PHAE (GT49 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNS3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.050e-22
Identity = 64/151 (42.38%), Postives = 80/151 (52.98%), Query Frame = 1 
Query:    1 STRRCGTHNVSRPLSMTLGIQSCHEVSPAMSGRRLLLPAARSPRGKLARASPQGERNSAVFTS*TTIRPKLGET-VGGLTYMD*RHFFLKTFVDVIM----------------------RELAPYFQAHVILLRRDPAAVLTSRIELGPFC 384
            ST RCGTH +S  L  + G+++ HE SP +SGR  LL AA  P           ER         + R  L ++ VG LTY++  H FLKTF DV+M                      RELAP+F+  V++LRRDPAAVL SRIELG FC
Sbjct: 1209 STGRCGTHYLSELLGTSPGVEAFHEASPELSGRHNLLAAATDPEKSYE------ERRHKAEEILRSARQHLSDSGVGTLTYVETSHLFLKTFSDVVMLPPGVLLISHLSTANLFFFCNQRELAPHFRVDVVVLRRDPAAVLKSRIELGHFC 1353
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15865.3401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNS3_9PHAE8.050e-2242.38GT49 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15865contigH-paniculata_contig15865:1288..2006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15865.3401.1prot_H-paniculata_contig15865.3401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15865 1299..1960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.6808977-UTR-H-paniculata_contig15865:1287..12981622929266.6808977-UTR-H-paniculata_contig15865:1287..1298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15865 1288..1298 +
1691480793.6236153-UTR-H-paniculata_contig15865:1287..12981691480793.6236153-UTR-H-paniculata_contig15865:1287..1298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15865 1288..1298 +
1622929266.7357717-UTR-H-paniculata_contig15865:1960..20061622929266.7357717-UTR-H-paniculata_contig15865:1960..2006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15865 1961..2006 +
1691480793.6558564-UTR-H-paniculata_contig15865:1960..20061691480793.6558564-UTR-H-paniculata_contig15865:1960..2006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15865 1961..2006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929266.7025485-CDS-H-paniculata_contig15865:1298..15751622929266.7025485-CDS-H-paniculata_contig15865:1298..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15865 1299..1575 +
1691480793.6350925-CDS-H-paniculata_contig15865:1298..15751691480793.6350925-CDS-H-paniculata_contig15865:1298..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15865 1299..1575 +
1622929266.7171905-CDS-H-paniculata_contig15865:1910..19601622929266.7171905-CDS-H-paniculata_contig15865:1910..1960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15865 1911..1960 +
1691480793.645241-CDS-H-paniculata_contig15865:1910..19601691480793.645241-CDS-H-paniculata_contig15865:1910..1960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15865 1911..1960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15865.3401.1

>prot_H-paniculata_contig15865.3401.1 ID=prot_H-paniculata_contig15865.3401.1|Name=mRNA_H-paniculata_contig15865.3401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MWHTQRFPSVEHDTGDTVVSRGVACYEWAPSSPSCCSFSQRKASEGVATR
RTQFCSLHFINDNTPEARRNCGRSDIHGLTTFFPQNLRRRYHARVSAVFP
GACHLATP*
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mRNA from alignment at H-paniculata_contig15865:1288..2006+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15865.3401.1 ID=mRNA_H-paniculata_contig15865.3401.1|Name=mRNA_H-paniculata_contig15865.3401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=719bp|location=Sequence derived from alignment at H-paniculata_contig15865:1288..2006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCACACGCCGATGTGGCACACACAACGTTTCCCGTCCGTTGAGCATGAC
ACTGGGGATACAGTCGTGTCACGAGGTGTCGCCTGCTATGAGTGGGCGCC
GTCTTCTCCTTCCTGCTGCTCGTTCTCCCAGAGGAAAGCTAGCGAGGGCG
TCGCCACAAGGCGAACGCAATTCTGCAGTCTTCACTTCATAAACGACAAT
ACGCCCGAAGCTCGGAGAAACTGTGGGCGGTCTGACATACATGGATTAAC
GACATTTTTTCCTCAAAACCTTCGTCGACGTTATCATGGTGGATACCCTC
AAGGGTCGGGTTATACGAAATTTATGTGTGTGTATATCTAGACGCTGCGA
AATGTCCCCCCCAAGCCACCTGCCTGCAGGATCACGGATGCTTCGGCCGG
GTAAAAAATGGTCGAAACATCATAATAGAACTGGGGTACGAAAGCTGGAC
GTACGTAACTATCCTCAGTCGAAGTGTCATAAACGCTGCTGCGCTGGTCT
CCTGGGGATAATATATATATATAGACGGTACGCTCTCGCGAGAAAGTGTC
TGTTCACCAAGAAGAAAGAGAAAACACCCCTCACCCACCGGTGACACAAC
CTCTCTTCGTTCACTGACGGCAGCGCGAGTTAGCGCCGTATTTCCAGGCG
CATGTCATCTTGCTACGCCGTGACCCGGCGGCGGTGTTGACGAGTCGGAT
CGAGCTTGGGCCATTTTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig15865:1288..2006+

>mRNA_H-paniculata_contig15865.3401.1 ID=mRNA_H-paniculata_contig15865.3401.1|Name=mRNA_H-paniculata_contig15865.3401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig15865:1288..2006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGCACACACAACGTTTCCCGTCCGTTGAGCATGACACTGGGGATAC
AGTCGTGTCACGAGGTGTCGCCTGCTATGAGTGGGCGCCGTCTTCTCCTT
CCTGCTGCTCGTTCTCCCAGAGGAAAGCTAGCGAGGGCGTCGCCACAAGG
CGAACGCAATTCTGCAGTCTTCACTTCATAAACGACAATACGCCCGAAGC
TCGGAGAAACTGTGGGCGGTCTGACATACATGGATTAACGACATTTTTTC
CTCAAAACCTTCGTCGACGTTATCATGATGTGGCACACACAACGTTTCCC
GTCCGTTGAGCATGACACTGGGGATACAGTCGTGTCACGAGGTGTCGCCT
GCTATGAGTGGGCGCCGTCTTCTCCTTCCTGCTGCTCGTTCTCCCAGAGG
AAAGCTAGCGAGGGCGTCGCCACAAGGCGAACGCAATTCTGCAGTCTTCA
CTTCATAAACGACAATACGCCCGAAGCTCGGAGAAACTGTGGGCGGTCTG
ACATACATGGATTAACGACATTTTTTCCTCAAAACCTTCGTCGACGTTAT
CATGCGCGAGTTAGCGCCGTATTTCCAGGCGCATGTCATCTTGCTACGCC
GTGACGCGAGTTAGCGCCGTATTTCCAGGCGCATGTCATCTTGCTACGCC
GTGA
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