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Homology
BLAST of mRNA_H-paniculata_contig15850.3394.1 vs. uniprot
Match: D7FIP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP0_ECTSI) HSP 1 Score: 276 bits (706), Expect = 4.760e-86 Identity = 160/325 (49.23%), Postives = 210/325 (64.62%), Query Frame = 2
Query: 389 LPEAVRAIIEECKAQQHEQQLAATTNVGGEAGGTLPYPCRMYE-SVPGEEELLQLQWMRIDMSTMDSEECWGEPSGCQEDYDCGPGSGLLLPAVYSVDPGQASTIPFIFPMTFVGLPSELMR-VQGDDEGSRRALPQEIPEDSLCKLGADITDLLS--QALERRGESLSDGLIHAVASLSQKDWDVCLERHVDLRKCNPSSFVELVSTCTPPTLDCLLGTVLPSLVAQIST---SQQESTSASAIESNAGIRKRKGGSSESEESCNDESALKAIRNLCRLGGAVAKAER--QDPIRFRNKISGSGLRNLGVVGREAEVALAEAFF 1336
LP AVRAI+EEC+A+ A +AG LPYPCRMYE S+PGEE +LQLQWMR+DMS MDSE CWGE S ++DCGP SGL+LPAVYS+DP Q + P T +GLP EL R +QG ++G + +IPED L KLG +T+ S RR E L +I VASLS+ DW VCLER+VD R+C+P++ +++ +PPTLDCLLGTVLP LV +IS+ + + TS+ ++ R GG + + N + A+ +CRL +VA + R DP+ FR+K+SGS LR LG +G+EAEVALAEAFF
Sbjct: 30 LPAAVRAIVEECRAKS-----ANPPPPEQQAGEVLPYPCRMYEESIPGEEGMLQLQWMRLDMSNMDSERCWGEAS-LDGEHDCGPDSGLVLPAVYSMDPAQ------VLPPTMIGLPPELQRDLQGSNDGFCQWASDDIPEDHLFKLGEKLTEAFSGEPGGSRRAEGLPPDVIAEVASLSRTDWSVCLERYVDFRRCDPTAIAQVLLAASPPTLDCLLGTVLPGLVTKISSLSAAAKAPTSSETGTKDSSASGRNGGEQAATSAGNGQRNTAALLAICRLAASVAASVRGDADPVAFRDKVSGSELRKLGALGKEAEVALAEAFF 342
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_000480.1 |
| Exons | 5 |
| Model size | 1360 |
| Cds size | 1140 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15850.3394.1 >prot_H-paniculata_contig15850.3394.1 ID=prot_H-paniculata_contig15850.3394.1|Name=mRNA_H-paniculata_contig15850.3394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=380bp
MSNNTPPSTPEDNGSNSIRTWSQFEAARASSAAREDSSQASSSSSSCSAD
SSNAPQLPEAVRAIIEECKAQQHEQQLAATTNVGGEAGGTLPYPCRMYES
VPGEEELLQLQWMRIDMSTMDSEECWGEPSGCQEDYDCGPGSGLLLPAVY
SVDPGQASTIPFIFPMTFVGLPSELMRVQGDDEGSRRALPQEIPEDSLCK
LGADITDLLSQALERRGESLSDGLIHAVASLSQKDWDVCLERHVDLRKCN
PSSFVELVSTCTPPTLDCLLGTVLPSLVAQISTSQQESTSASAIESNAGI
RKRKGGSSESEESCNDESALKAIRNLCRLGGAVAKAERQDPIRFRNKISG
SGLRNLGVVGREAEVALAEAFFDRRSGQP* back to topmRNA from alignment at H-paniculata_contig15850:110..3534+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig15850.3394.1 ID=mRNA_H-paniculata_contig15850.3394.1|Name=mRNA_H-paniculata_contig15850.3394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3425bp|location=Sequence derived from alignment at H-paniculata_contig15850:110..3534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTGCTGCTGCCAATCTGTCTGTTTTCCACATGAAGCTGGGGAGAAGTC
GACCTAGAGACCAAGAGCAGTCCACTTGCCTTGTTTTGTTATAGTGCTCT
GAAGCGAACGTTACGCAGACACATCTTGTCTTGTACGTCAATTTCGGACC
AGATGATACCAGGATTATACCATACTGTAGAAGTACTCGTATTTTTTCAA
ATCTCAGCGTAGGAAGGGCTATGAGCAACAATACGCCCCCTAGCACCCCT
GAAGACAACGGTAGCAACAGCATCAGGACGTGGTCTCAATTCGAAGCAGC
TCGAGCGTCCTCCGCGGCGCGAGAGGACAGCTCGCAGGCATCATCCTCTT
CATCTTCTTGTTCTGCAGACTCCAGCAACGCTCCACAACTCCCAGAGGCA
GTGAGAGCCATAATCGAGGAATGTAAAGCACAACAACACGAGCAGCAACT
GGCTGCTACTACAAATGTTGGTGGGGAGGCGGGGGGGACATTGCCTTATC
CGTGTCGTATGTACGAGTCGGTACCCGGCGAAGAAGAGCTTCTTCAGTTG
CAGTGGATGAGAATCGATGTGAGTGCACTGTCTGTAGTGTTTACTGTATT
TAGTTGTCCAGCACACCGAATCACGATATGATGATACTACTGTCGCACTT
CTTCCTCTCGTCTCATACGCACGTTTATGTCCAACTAATTTAGCGCGATG
CGCTCGCAGGGAATAGCTAGAGGTATTCTTGCACGTTTCAACTAACTAGG
TATGACTTTATAACGACTCTTTGGCTGCCAGTTGGCCCGCTGCTCAACGC
GTGAGACCTTCCTTCGTCATATGGTTTGGAGATTAGTAGGCATTACTCGG
TCGTTAAAAATAGTAGTGGTCGGAATCACATTTTGAATCCTTCCGCGCAT
CATTGCACACCCACAGATGTCAACCATGGACAGCGAGGAGTGCTGGGGAG
AGCCTTCCGGTTGCCAAGAGGACTACGATTGCGGCCCGGGCTCGGGGTTG
CTCTTACCCGCAGTATACAGCGTTGATCCTGGACAAGCAAGTACCATTCC
ATTCGTACGACTGATCTTGGTGACGCTGTATAACACCCTCACTCCCCCTC
TCCCTCCTCCGTTGAAGGATGAGATTTTGCCACCAACAAGGGGATGCAGA
TCGTGGGCACGCCATTCTCACGTACGGCTATTGCGATATTTGGAAGGACA
CGCCGGTTCTGTAGAGTTTACCAGGCTGTCGAATGCGACGGTTAAGCTGT
ACAAACTTACAAAACCACGATAACAGATGACGTCACGTGGGCGTCATGGC
CTGGAGGGTCCACAACCTTTGCCCCAAACCTGTTTTTCTCGCAAACGATG
CCAACGGCGCCGATCTGAGTTTTACCAGCGTACCCTAGGCTAGGATGTGG
GGGCTAGGGCTAGGGGTAGCATTAGTTCCGCCTGGGGTTCTAGTCGCGTC
GGCGCACAACATGGCGTAACCGTTTCACGAACTTTTAATCATTACATTCG
AAGAAGTTGTGACTGACTTTCCCCGGTAGGCACTGGCGTTCTTTCGTGGT
GTCGAGATAATTGGGTGGAGGTAGCCCATATATATCTGACTCCTGTATTT
TTCAAAACTAATTTGCGGTATTGTGGACGTCCGTTATTATAGTCGGTATG
TTGGCTGCGACACTCGACGCGTTTGCAGCACGACGCGGCAGGTCAGGATA
CAGATATACCACAGCTCAGTAACGGACCTGCACTCCTTCCCTATGTTCTG
ATGCCTTGCAAAAGAGCAGCAGTTTAATTTTGGCATCAAGAGAAGCTTCG
CGTAAGGTTTCTGCAGGATGCACCCAAAATGCCGTCGGCCGAGCTCCTCA
CTTCTTCTCCGTCCTCCTCGGACCCCCGTACAAACAGGAATTGCGTGGTT
GTATCCGAATGTTCGAATTTTCACTTTTCCCAGGTTTTGAACCGATGACA
TGTAAACGTACAAGGTTAACTGGCAATTCTGATCATTCTGTTTATCAGAC
CTTAACCGAATGGTTTTATTTTGTTTACAAGGCGTTCATTTTTGGAACGT
GTTGTCCCTAATCTTCCATTTTCGCATGCTGCGGCGGTGCCCTGCCTTTT
CTGCGTTCGTCGCAGATATTCCCGATGACATTCGTGGGGCTCCCGTCGGA
GCTCATGCGCGTTCAAGGCGACGACGAGGGATCTCGACGAGCGCTACCTC
AAGAAATTCCTGTAAGCTACACGAGTCTTTCCTCGGGAACGTTTGTGTTC
GTGAGGTTGAATTCACCGGTCCGTCGATGTCCCGGCCGCGATCTGATTGA
TCGCCGTTGTAAATTTCATGAAGATAACCGTCACCATTTGCCTGCCCTCA
TGTGCACAGGAGGATAGTTTGTGCAAGCTTGGGGCTGATATAACGGATTT
ACTATCACAGGCATTAGAGCGACGAGGAGAAAGCCTTTCTGATGGTCTCA
TACATGCTGTGGCTTCTCTGTCACAGAAGGATTGGGACGTCTGCCTCGAA
CGGCACGTGGACCTTCGCAAGTGGGTGCCTCGCCATCGCCCGTAGTTTCC
CTTGAAATCCGTTGCCCAGCTCATGTGAAATGTCACTTGGGGCAAACCGT
TTACGTCGAGTAACAACTTCATTTGGTCCGCATGTTGTTAGTTACCCACT
GGTCGCTTCGTTGTTTCCTGAATGCGATCATGTGCTGTGAACAATCGTTC
AGTGTGAGCTGTCTACGGCAAATACACGAGTCACAATATTAGTGTTAGCC
TGCTCTCCCCGCCCGGTCACTGTCATCCAGGGTTTCTCCCCTCGCCCGTT
TCATATTGTTAGTTGACCTCGTATTAATAGCATATTTACCATTCTTAACA
TATGATTCCAATGGTCACTGACATGAATCATCTTAGAGCTCGTAATCTAC
AATATGATTGAGTTGTGCATCCAGTCTATTTGATTAGAAAGTAGCCGCAC
AGTGCACGTCTCAAGAGAACCCCTCCACCCGTCCCCGCCCCGCTTGGTCG
CCGGCCGTTCACACTCCTCTCCGGGCAGATGTAACCCTTCCTCGTTCGTT
GAGCTCGTTTCCACGTGCACTCCTCCAACCCTGGACTGTCTGCTCGGCAC
AGTGTTACCCTCGTTGGTCGCCCAAATTTCAACGTCGCAACAAGAAAGCA
CCTCCGCATCCGCCATCGAATCGAATGCCGGGATCCGAAAAAGGAAAGGC
GGGAGTAGCGAATCAGAAGAAAGTTGTAACGATGAAAGCGCGTTAAAGGC
GATACGAAATCTGTGCAGGTTGGGTGGAGCCGTTGCTAAGGCGGAGAGGC
AAGATCCCATCCGATTCAGAAATAAAATATCTGGGAGCGGGTTGAGAAAC
TTGGGCGTCGTGGGTAGAGAGGCGGAAGTTGCTCTTGCAGAGGCCTTTTT
CGACAGGAGGTCGGGTCAACCCTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig15850:110..3534+ >mRNA_H-paniculata_contig15850.3394.1 ID=mRNA_H-paniculata_contig15850.3394.1|Name=mRNA_H-paniculata_contig15850.3394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2280bp|location=Sequence derived from alignment at H-paniculata_contig15850:110..3534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAACAATACGCCCCCTAGCACCCCTGAAGACAACGGTAGCAACAG
CATCAGGACGTGGTCTCAATTCGAAGCAGCTCGAGCGTCCTCCGCGGCGC
GAGAGGACAGCTCGCAGGCATCATCCTCTTCATCTTCTTGTTCTGCAGAC
TCCAGCAACGCTCCACAACTCCCAGAGGCAGTGAGAGCCATAATCGAGGA
ATGTAAAGCACAACAACACGAGCAGCAACTGGCTGCTACTACAAATGTTG
GTGGGGAGGCGGGGGGGACATTGCCTTATCCGTGTCGTATGTACGAGTCG
GTACCCGGCGAAGAAGAGCTTCTTCAGTTGCAGTGGATGAGAATCGATAT
GAGCAACAATACGCCCCCTAGCACCCCTGAAGACAACGGTAGCAACAGCA
TCAGGACGTGGTCTCAATTCGAAGCAGCTCGAGCGTCCTCCGCGGCGCGA
GAGGACAGCTCGCAGGCATCATCCTCTTCATCTTCTTGTTCTGCAGACTC
CAGCAACGCTCCACAACTCCCAGAGGCAGTGAGAGCCATAATCGAGGAAT
GTAAAGCACAACAACACGAGCAGCAACTGGCTGCTACTACAAATGTTGGT
GGGGAGGCGGGGGGGACATTGCCTTATCCGTGTCGTATGTACGAGTCGGT
ACCCGGCGAAGAAGAGCTTCTTCAGTTGCAGTGGATGAGAATCGATATGT
CAACCATGGACAGCGAGGAGTGCTGGGGAGAGCCTTCCGGTTGCCAAGAG
GACTACGATTGCGGCCCGGGCTCGGGGTTGCTCTTACCCGCAGTATACAG
CGTTGATCCTGGACAAGCAAGTACCATTCCATTCATGTCAACCATGGACA
GCGAGGAGTGCTGGGGAGAGCCTTCCGGTTGCCAAGAGGACTACGATTGC
GGCCCGGGCTCGGGGTTGCTCTTACCCGCAGTATACAGCGTTGATCCTGG
ACAAGCAAGTACCATTCCATTCATATTCCCGATGACATTCGTGGGGCTCC
CGTCGGAGCTCATGCGCGTTCAAGGCGACGACGAGGGATCTCGACGAGCG
CTACCTCAAGAAATTCCTATATTCCCGATGACATTCGTGGGGCTCCCGTC
GGAGCTCATGCGCGTTCAAGGCGACGACGAGGGATCTCGACGAGCGCTAC
CTCAAGAAATTCCTGAGGATAGTTTGTGCAAGCTTGGGGCTGATATAACG
GATTTACTATCACAGGCATTAGAGCGACGAGGAGAAAGCCTTTCTGATGG
TCTCATACATGCTGTGGCTTCTCTGTCACAGAAGGATTGGGACGTCTGCC
TCGAACGGCACGTGGACCTTCGCAAGAGGATAGTTTGTGCAAGCTTGGGG
CTGATATAACGGATTTACTATCACAGGCATTAGAGCGACGAGGAGAAAGC
CTTTCTGATGGTCTCATACATGCTGTGGCTTCTCTGTCACAGAAGGATTG
GGACGTCTGCCTCGAACGGCACGTGGACCTTCGCAAATGTAACCCTTCCT
CGTTCGTTGAGCTCGTTTCCACGTGCACTCCTCCAACCCTGGACTGTCTG
CTCGGCACAGTGTTACCCTCGTTGGTCGCCCAAATTTCAACGTCGCAACA
AGAAAGCACCTCCGCATCCGCCATCGAATCGAATGCCGGGATCCGAAAAA
GGAAAGGCGGGAGTAGCGAATCAGAAGAAAGTTGTAACGATGAAAGCGCG
TTAAAGGCGATACGAAATCTGTGCAGGTTGGGTGGAGCCGTTGCTAAGGC
GGAGAGGCAAGATCCCATCCGATTCAGAAATAAAATATCTGGGAGCGGGT
TGAGAAACTTGGGCGTCGTGGGTAGAGAGGCGGAAGTTGCTCTTGCAGAG
GCCTTTTTCGACAGGAGGTCGGGTCAACCCTGAATGTAACCCTTCCTCGT
TCGTTGAGCTCGTTTCCACGTGCACTCCTCCAACCCTGGACTGTCTGCTC
GGCACAGTGTTACCCTCGTTGGTCGCCCAAATTTCAACGTCGCAACAAGA
AAGCACCTCCGCATCCGCCATCGAATCGAATGCCGGGATCCGAAAAAGGA
AAGGCGGGAGTAGCGAATCAGAAGAAAGTTGTAACGATGAAAGCGCGTTA
AAGGCGATACGAAATCTGTGCAGGTTGGGTGGAGCCGTTGCTAAGGCGGA
GAGGCAAGATCCCATCCGATTCAGAAATAAAATATCTGGGAGCGGGTTGA
GAAACTTGGGCGTCGTGGGTAGAGAGGCGGAAGTTGCTCTTGCAGAGGCC
TTTTTCGACAGGAGGTCGGGTCAACCCTGA back to top
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