mRNA_H-paniculata_contig15838.3390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A6H5KPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB1_9PHAE) HSP 1 Score: 192 bits (488), Expect = 1.410e-54 Identity = 91/117 (77.78%), Postives = 106/117 (90.60%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
+KKDVLANDGLPPKREVVVYAGMT+ QRGYY+LV +NALR LM M I+GA R+SEIN+NMNQRKVCQHPFLFGEP+DK+T E+VG++NPE+LV ASGK+ALMDRMLKKL + GHKV
Sbjct: 534 IKKDVLANDGLPPKREVVVYAGMTSWQRGYYDLVGRNALRQALMDMGIEGAARLSEININMNQRKVCQHPFLFGEPKDKMTGEYVGIKNPEILVRASGKVALMDRMLKKLHAGGHKV 650
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI) HSP 1 Score: 191 bits (484), Expect = 4.850e-54 Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
+KKDVLANDGLPPKREVVVYAGMT+ QRGYY+L +NALR LM M I+GA R+SEIN+NMNQRKVCQHPFLFGEP+DK+T E+VG++NPE+LV ASGK+ALMDRMLKKL + GHKV
Sbjct: 482 MKKDVLANDGLPPKREVVVYAGMTSWQRGYYDLAGRNALRQALMDMGIEGAARLSEININMNQRKVCQHPFLFGEPKDKMTGEYVGIKNPEILVRASGKVALMDRMLKKLHAGGHKV 598
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A835Z5K9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K9_9STRA) HSP 1 Score: 163 bits (413), Expect = 5.020e-45 Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
LK+DVL N+ +PPKREV+VYAGMT +QR YY LV LRDTL ++ I+GA +S+IN NMNQRKVCQHP+LFGEPRDK T E+VGV NPE LVAASGKLAL+DR+LK+LK GHKV
Sbjct: 256 LKRDVLQNE-MPPKREVLVYAGMTRLQRTYYSLVEAGTLRDTLCELGIEGAADISQINSNMNQRKVCQHPYLFGEPRDK-TGEYVGVSNPETLVAASGKLALLDRLLKRLKQQGHKV 370
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A835ZBT7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBT7_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.430e-39 Identity = 74/117 (63.25%), Postives = 94/117 (80.34%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
LK+DVL + +PPK E+VVYAGMT +QR YY LV LR+TL+++ I+GA +S+IN++MN RKVCQHP+LFGEPRDK + E+VG NPE LVAASGKLAL+DR+L KL+ GHKV
Sbjct: 359 LKRDVLQVE-IPPKCEIVVYAGMTRLQRTYYSLVETGTLRETLLELGIEGAAEISQINISMNLRKVCQHPYLFGEPRDK-SGEYVGTTNPETLVAASGKLALLDRLLTKLRKQGHKV 473
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A7S2G339_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G339_9STRA) HSP 1 Score: 125 bits (315), Expect = 4.760e-31 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
LKKDVL + +PPK E+V+Y M+ +QR YY+L K LR++L+ M + G S+IN NMN RK+C HPFLFGEP D + +PELLV+ SGK +MDRMLKKLKS GH+V
Sbjct: 434 LKKDVLLD--MPPKLEIVLYTPMSVLQRDYYDLTLKGELRESLLNMGLSGGRECSQINQNMNLRKICNHPFLFGEPSDDSGQPMCDA-HPELLVSVSGKFKIMDRMLKKLKSNGHQV 547
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A6U1QEQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEQ7_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.740e-29 Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTRE--FVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
LK++VL + +PPK+E+VVYA M+ +QR +Y LV K +LRD L I+GA +S+IN MN RKVC HPFLFGEP+ T E ++G NPE LV+A GK+ L+D++ KKLK+ GHKV
Sbjct: 456 LKQNVLVD--MPPKKELVVYAPMSQLQRDFYALVQKGSLRDVLTTWGIEGAKGISQINDCMNLRKVCNHPFLFGEPK---TNEGVYLGEANPETLVSACGKMVLLDKLCKKLKAGGHKV 569
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A7S0UK64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UK64_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.040e-29 Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
+K DVL +PPK+EVVVY+GM+ +Q GY +L+ K LRD L++ I A +S+ N MNQRK HPF+FGEP D T +G P+LLV ASGK ALMDRML++L GH+V
Sbjct: 160 VKVDVLKE--MPPKKEVVVYSGMSKLQLGYADLIEKGVLRDELLRQGIADARNLSQTNKMMNQRKNVNHPFMFGEPLDPSTGTHIGTIYPQLLVRASGKFALMDRMLERLHKDGHQV 274
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A812NIQ1_SYMMI (CHR5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NIQ1_SYMMI) HSP 1 Score: 113 bits (283), Expect = 1.440e-28 Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 49 VVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
VV+Y M+++Q+ YY V ++RDTL+ M I+ A S++N+ MN RKVC HPFLFGEPRD + +++G NP LLV ASGK L+DRML +LK+ GHKV
Sbjct: 1 VVIYCPMSSLQKEYYTRVADGSIRDTLVCMGIERARDTSQMNMVMNLRKVCNHPFLFGEPRDPASGQYLGELNPALLVLASGKFKLLDRMLPRLKAQGHKV 101
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: K0R0E3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0E3_THAOC) HSP 1 Score: 118 bits (296), Expect = 1.780e-28 Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
+KKDVL + LPPK+E+VVYAGM+ +Q GY +++ + LRD L+ I+ A +S+ N MN RK C HPF+FGEP D T +G +P+LL+ ASGK AL+DRML +L H+V
Sbjct: 476 IKKDVLTD--LPPKKEIVVYAGMSKLQDGYSKMIEQGVLRDILLNQGIESARTLSQTNKQMNHRKNCNHPFMFGEPIDPATGAHLGSAHPQLLIRASGKFALLDRMLDRLYKDKHQV 590
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.020e-28 Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
+K+DVL + LPPK+EVV+Y+GM+ +Q GY +L+ K +R LM I GA ++S+ N MN RK HPFLFGEP D V+ +G +P+LLV ASGK AL+DRML L H+V
Sbjct: 115 IKRDVLTD--LPPKKEVVIYSGMSKLQSGYADLIEKGTIRQILMNQGISGASKLSQTNKQMNHRKNSNHPFLFGEPIDSVSGLHLGTAHPQLLVRASGKFALLDRMLTSLWEDKHQV 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15838.3390.1 >prot_H-paniculata_contig15838.3390.1 ID=prot_H-paniculata_contig15838.3390.1|Name=mRNA_H-paniculata_contig15838.3390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGback to top mRNA from alignment at H-paniculata_contig15838:727..2519+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15838.3390.1 ID=mRNA_H-paniculata_contig15838.3390.1|Name=mRNA_H-paniculata_contig15838.3390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1793bp|location=Sequence derived from alignment at H-paniculata_contig15838:727..2519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15838:727..2519+ >mRNA_H-paniculata_contig15838.3390.1 ID=mRNA_H-paniculata_contig15838.3390.1|Name=mRNA_H-paniculata_contig15838.3390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig15838:727..2519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |