mRNA_H-paniculata_contig15838.3390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15838.3390.1
Unique NamemRNA_H-paniculata_contig15838.3390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A6H5KPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB1_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.410e-54
Identity = 91/117 (77.78%), Postives = 106/117 (90.60%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            +KKDVLANDGLPPKREVVVYAGMT+ QRGYY+LV +NALR  LM M I+GA R+SEIN+NMNQRKVCQHPFLFGEP+DK+T E+VG++NPE+LV ASGK+ALMDRMLKKL + GHKV
Sbjct:  534 IKKDVLANDGLPPKREVVVYAGMTSWQRGYYDLVGRNALRQALMDMGIEGAARLSEININMNQRKVCQHPFLFGEPKDKMTGEYVGIKNPEILVRASGKVALMDRMLKKLHAGGHKV 650          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 4.850e-54
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            +KKDVLANDGLPPKREVVVYAGMT+ QRGYY+L  +NALR  LM M I+GA R+SEIN+NMNQRKVCQHPFLFGEP+DK+T E+VG++NPE+LV ASGK+ALMDRMLKKL + GHKV
Sbjct:  482 MKKDVLANDGLPPKREVVVYAGMTSWQRGYYDLAGRNALRQALMDMGIEGAARLSEININMNQRKVCQHPFLFGEPKDKMTGEYVGIKNPEILVRASGKVALMDRMLKKLHAGGHKV 598          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A835Z5K9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K9_9STRA)

HSP 1 Score: 163 bits (413), Expect = 5.020e-45
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            LK+DVL N+ +PPKREV+VYAGMT +QR YY LV    LRDTL ++ I+GA  +S+IN NMNQRKVCQHP+LFGEPRDK T E+VGV NPE LVAASGKLAL+DR+LK+LK  GHKV
Sbjct:  256 LKRDVLQNE-MPPKREVLVYAGMTRLQRTYYSLVEAGTLRDTLCELGIEGAADISQINSNMNQRKVCQHPYLFGEPRDK-TGEYVGVSNPETLVAASGKLALLDRLLKRLKQQGHKV 370          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A835ZBT7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBT7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.430e-39
Identity = 74/117 (63.25%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            LK+DVL  + +PPK E+VVYAGMT +QR YY LV    LR+TL+++ I+GA  +S+IN++MN RKVCQHP+LFGEPRDK + E+VG  NPE LVAASGKLAL+DR+L KL+  GHKV
Sbjct:  359 LKRDVLQVE-IPPKCEIVVYAGMTRLQRTYYSLVETGTLRETLLELGIEGAAEISQINISMNLRKVCQHPYLFGEPRDK-SGEYVGTTNPETLVAASGKLALLDRLLTKLRKQGHKV 473          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A7S2G339_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G339_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.760e-31
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            LKKDVL +  +PPK E+V+Y  M+ +QR YY+L  K  LR++L+ M + G    S+IN NMN RK+C HPFLFGEP D   +      +PELLV+ SGK  +MDRMLKKLKS GH+V
Sbjct:  434 LKKDVLLD--MPPKLEIVLYTPMSVLQRDYYDLTLKGELRESLLNMGLSGGRECSQINQNMNLRKICNHPFLFGEPSDDSGQPMCDA-HPELLVSVSGKFKIMDRMLKKLKSNGHQV 547          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A6U1QEQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEQ7_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.740e-29
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTRE--FVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            LK++VL +  +PPK+E+VVYA M+ +QR +Y LV K +LRD L    I+GA  +S+IN  MN RKVC HPFLFGEP+   T E  ++G  NPE LV+A GK+ L+D++ KKLK+ GHKV
Sbjct:  456 LKQNVLVD--MPPKKELVVYAPMSQLQRDFYALVQKGSLRDVLTTWGIEGAKGISQINDCMNLRKVCNHPFLFGEPK---TNEGVYLGEANPETLVSACGKMVLLDKLCKKLKAGGHKV 569          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A7S0UK64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UK64_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.040e-29
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            +K DVL    +PPK+EVVVY+GM+ +Q GY +L+ K  LRD L++  I  A  +S+ N  MNQRK   HPF+FGEP D  T   +G   P+LLV ASGK ALMDRML++L   GH+V
Sbjct:  160 VKVDVLKE--MPPKKEVVVYSGMSKLQLGYADLIEKGVLRDELLRQGIADARNLSQTNKMMNQRKNVNHPFMFGEPLDPSTGTHIGTIYPQLLVRASGKFALMDRMLERLHKDGHQV 274          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A812NIQ1_SYMMI (CHR5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NIQ1_SYMMI)

HSP 1 Score: 113 bits (283), Expect = 1.440e-28
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   49 VVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            VV+Y  M+++Q+ YY  V   ++RDTL+ M I+ A   S++N+ MN RKVC HPFLFGEPRD  + +++G  NP LLV ASGK  L+DRML +LK+ GHKV
Sbjct:    1 VVIYCPMSSLQKEYYTRVADGSIRDTLVCMGIERARDTSQMNMVMNLRKVCNHPFLFGEPRDPASGQYLGELNPALLVLASGKFKLLDRMLPRLKAQGHKV 101          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: K0R0E3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0E3_THAOC)

HSP 1 Score: 118 bits (296), Expect = 1.780e-28
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            +KKDVL +  LPPK+E+VVYAGM+ +Q GY +++ +  LRD L+   I+ A  +S+ N  MN RK C HPF+FGEP D  T   +G  +P+LL+ ASGK AL+DRML +L    H+V
Sbjct:  476 IKKDVLTD--LPPKKEIVVYAGMSKLQDGYSKMIEQGVLRDILLNQGIESARTLSQTNKQMNHRKNCNHPFMFGEPIDPATGAHLGSAHPQLLIRASGKFALLDRMLDRLYKDKHQV 590          
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.020e-28
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDGAVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKLALMDRMLKKLKSTGHKV 351
            +K+DVL +  LPPK+EVV+Y+GM+ +Q GY +L+ K  +R  LM   I GA ++S+ N  MN RK   HPFLFGEP D V+   +G  +P+LLV ASGK AL+DRML  L    H+V
Sbjct:  115 IKRDVLTD--LPPKKEVVIYSGMSKLQSGYADLIEKGTIRQILMNQGISGASKLSQTNKQMNHRKNSNHPFLFGEPIDSVSGLHLGTAHPQLLVRASGKFALLDRMLTSLWEDKHQV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15838.3390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPB1_9PHAE1.410e-5477.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDG7_ECTSI4.850e-5476.92Putative ATP-dependent helicase YFR038W n=1 Tax=Ec... [more]
A0A835Z5K9_9STRA5.020e-4570.09SNF2 family N-terminal domain-containing protein n... [more]
A0A835ZBT7_9STRA1.430e-3963.25P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2G339_9STRA4.760e-3153.85Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6U1QEQ7_9STRA2.740e-2953.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0UK64_9STRA3.040e-2952.14Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A812NIQ1_SYMMI1.440e-2853.47CHR5 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
K0R0E3_THAOC1.780e-2849.57Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0BX46_9STRA2.020e-2850.43Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15838contigH-paniculata_contig15838:727..2519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.5e-46
Seed eggNOG ortholog2880.D8LDG7
KEGG koko:K19001
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size379
Cds size378
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15838.3390.1prot_H-paniculata_contig15838.3390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15838 727..2519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.106602-CDS-H-paniculata_contig15838:726..8551622929264.106602-CDS-H-paniculata_contig15838:726..855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15838 727..855 +
1691480792.9633667-CDS-H-paniculata_contig15838:726..8551691480792.9633667-CDS-H-paniculata_contig15838:726..855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15838 727..855 +
1622929264.1171172-CDS-H-paniculata_contig15838:1178..13221622929264.1171172-CDS-H-paniculata_contig15838:1178..1322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15838 1179..1322 +
1691480792.9753451-CDS-H-paniculata_contig15838:1178..13221691480792.9753451-CDS-H-paniculata_contig15838:1178..1322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15838 1179..1322 +
1622929264.130364-CDS-H-paniculata_contig15838:2414..25191622929264.130364-CDS-H-paniculata_contig15838:2414..2519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15838 2415..2519 +
1691480792.9847984-CDS-H-paniculata_contig15838:2414..25191691480792.9847984-CDS-H-paniculata_contig15838:2414..2519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15838 2415..2519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15838.3390.1

>prot_H-paniculata_contig15838.3390.1 ID=prot_H-paniculata_contig15838.3390.1|Name=mRNA_H-paniculata_contig15838.3390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
LKKDVLANDGLPPKREVVVYAGMTTVQRGYYELVCKNALRDTLMKMDIDG
AVRVSEINVNMNQRKVCQHPFLFGEPRDKVTREFVGVQNPELLVAASGKL
ALMDRMLKKLKSTGHKVRRMIALPG*
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mRNA from alignment at H-paniculata_contig15838:727..2519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15838.3390.1 ID=mRNA_H-paniculata_contig15838.3390.1|Name=mRNA_H-paniculata_contig15838.3390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1793bp|location=Sequence derived from alignment at H-paniculata_contig15838:727..2519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAAGAAAGACGTTTTGGCGAACGACGGCTTGCCTCCTAAGAGAGAGGT GGTGGTGTACGCTGGGATGACAACGGTGCAGAGAGGGTACTACGAGTTGG TCTGCAAGAATGCTCTCAGGGATACTTTGGCAAGTACCCTTTCTCGCCAT GAATTACGCAAGAGTTTGGGGACCGTTCTTATACGCTGTCCCCAAGTAGC TGCGTGATGATGGTGCTCGTGACTCGGAACAGCGTCTGCAACTTTTGTCT CAAGTGTGGTTTGGCGGAAAAATACGCCCTGTAAAGGTCGAATCGAAGCA AATATCTTGTAAAATGTTGGAAACCTTGGCGTATATCCTATGATGATGAT GACATATCCGTCGTGTTTTTTTTTTTTTTTTTTCACATGTATATCTATGT CCTCCTGTCCTACCGCGTACGTCTGTGGAATGTTGTTGACGTTATGTGTC AGATGAAGATGGACATCGACGGAGCAGTGCGTGTGAGCGAGATCAACGTA AACATGAACCAGCGTAAGGTTTGCCAGCACCCGTTCCTGTTCGGCGAGCC TAGGGACAAGGTCACGAGGGAGTTCGTCGGTGTACAAAACCCCGAGGTGA ATCGTATACCACAAGTACCTTTTTTCTGCTCATGTGTTTTTGCCGTTTTT GTTCAATTTACTTGTCTTGTTTTCAGTTAGTTTGTGTTCGTTATTTTGCT CGTATTAGTGCCGTCGAGCTTTCCCGTCACAAAGAAGATATCTATCTATC TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC TATCTATCTATCTATATTTCATGCCTGTATGCAGAACCTCGAGTTCACCT GGGTCTTTTTGGTTTTTCGCTTGTCTCACGTTCCAAGTATACAAGTATAT ATACACATATTTGATGGCTGATGATTTAGCCTGTATGAGCATCTTTTCAG GATTTGTTTTCTGGGACTGAGTAAGCTGGTTTTTTTTTTCTTTTTTTTTT CCCCCATGAAGTAGCTTGATGTTGCTTATTATTTTTTCCCCACCATGGAG TTTGTTTCATTTCTCCGTACCCGCCTACCCATCTCGATTGCTGCTGATCT CTACAGTAGCATGTTGATCCTGGTGAGCATATGTGTCTTGTTTCCGTGTG AGCATTTGGATGTCGAACACGCGGAAACACTTACTTGTGTAGAAAAATGT GAGGTGTTACTGTTGTAGCGTGCTTACGAACATGCTTTGGTGACTGTACT TGGTTCATTGATCGTGCGCTGTGATTGGTCGACACGAGCGAACGTCAACC GACGATTTGTTTTTGTCTTCCGGCTGATATTCATGCCTGTGTCGTCTTGC CCTCTTGGGGTTGATTGATCGGCCGATCGCCAGTATTTATTGTGACTGAC CCCCTAAGGATCCGCTCCTCCTAATGACCACATTGTATAATTCGTAGCGG CCACTTCGTGAACAGTCATCAATACACTGTCGACATTCGGCCAATCATGA CACCTCGTCAACAAGGCTGAACTCTTGACCTTCGGGGCGGGATGGTTACG TAATCCCGGCTCCCAACGGGTCATTTGATCCATCAGGTGCACCCCCCCTC CCCCCCACCCCCCGCGGGCGCTCTTTCCTCCCGCACAGCTACTGGTTGCG GCCTCCGGCAAGCTAGCGTTGATGGATAGGATGCTCAAGAAGCTCAAGTC GACGGGGCACAAAGTAAGACGCATGATTGCACTTCCAGGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig15838:727..2519+

>mRNA_H-paniculata_contig15838.3390.1 ID=mRNA_H-paniculata_contig15838.3390.1|Name=mRNA_H-paniculata_contig15838.3390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig15838:727..2519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAAGAAAGACGTTTTGGCGAACGACGGCTTGCCTCCTAAGAGAGAGGT
GGTGGTGTACGCTGGGATGACAACGGTGCAGAGAGGGTACTACGAGTTGG
TCTGCAAGAATGCTCTCAGGGATACTTTGTTGAAGAAAGACGTTTTGGCG
AACGACGGCTTGCCTCCTAAGAGAGAGGTGGTGGTGTACGCTGGGATGAC
AACGGTGCAGAGAGGGTACTACGAGTTGGTCTGCAAGAATGCTCTCAGGG
ATACTTTGATGAAGATGGACATCGACGGAGCAGTGCGTGTGAGCGAGATC
AACGTAAACATGAACCAGCGTAAGGTTTGCCAGCACCCGTTCCTGTTCGG
CGAGCCTAGGGACAAGGTCACGAGGGAGTTCGTCGGTGTACAAAACCCCG
AGATGAAGATGGACATCGACGGAGCAGTGCGTGTGAGCGAGATCAACGTA
AACATGAACCAGCGTAAGGTTTGCCAGCACCCGTTCCTGTTCGGCGAGCC
TAGGGACAAGGTCACGAGGGAGTTCGTCGGTGTACAAAACCCCGAGCTAC
TGGTTGCGGCCTCCGGCAAGCTAGCGTTGATGGATAGGATGCTCAAGAAG
CTCAAGTCGACGGGGCACAAAGTAAGACGCATGATTGCACTTCCAGGTTA
ACTACTGGTTGCGGCCTCCGGCAAGCTAGCGTTGATGGATAGGATGCTCA
AGAAGCTCAAGTCGACGGGGCACAAAGTAAGACGCATGATTGCACTTCCA
GGTTAA
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