mRNA_H-paniculata_contig15831.3389.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15831.3389.1
Unique NamemRNA_H-paniculata_contig15831.3389.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig15831.3389.1 vs. uniprot
Match: A0A6H5L421_9PHAE (Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L421_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.100e-12
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:   80 ELHLMVRFAHRFAVGEDPVMSQPTTVNLSDLVPGYSLLFAEEISLTGGASLASRTQRLKWSTATV 274
            +L L+VR AHR+A GED V+S P +V+LS LV G++L+ A EI+LTGG +L+SRTQRLKW++AT 
Sbjct: 1211 DLTLLVRLAHRYAKGEDAVLSLPASVDLSRLVLGHTLVKATEIALTGGGALSSRTQRLKWTSATT 1275
[Close]
BLAST of mRNA_H-paniculata_contig15831.3389.1 vs. uniprot
Match: D7FJT1_ECTSI (Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.550e-12
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 2 
Query:   80 ELHLMVRFAHRFAVGEDPVMSQPTTVNLSDLVPGYSLLFAEEISLTGGASLASRTQRLKWSTATV 274
            +L L+VR AHR+A GED V+S P +V+LS LV G++L+ A EI+LTGG +L+SRTQRLKW++ T 
Sbjct: 1178 DLTLLVRLAHRYAKGEDAVLSLPASVDLSRLVLGHTLVKATEIALTGGGALSSRTQRLKWTSTTA 1242
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15831.3389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L421_9PHAE1.100e-1260.00Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D7FJT1_ECTSI3.550e-1258.46Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15831contigH-paniculata_contig15831:560..2946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue7.3e-12
Seed eggNOG ortholog2880.D7FJT1
KEGG koko:K01191,ko:K12311
KEGG ReactionR08717,R08718
KEGG Pathwayko00511,ko04142,map00511,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009505,GO:0009987,GO:0012505,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0030141,GO:0030312,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:1901135,GO:1901564,GO:1901575
EggNOG free text desc.mannose metabolic process
EggNOG OGsKOG1959@1,KOG1959@2759
EC3.2.1.24
COG Functional cat.G
CAZyGH38
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons2
Model size977
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15831.3389.1prot_H-paniculata_contig15831.3389.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15831 852..2942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929263.9894578-UTR-H-paniculata_contig15831:559..8511622929263.9894578-UTR-H-paniculata_contig15831:559..851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15831 560..851 -
1691480792.920796-UTR-H-paniculata_contig15831:559..8511691480792.920796-UTR-H-paniculata_contig15831:559..851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15831 560..851 -
1622929264.0532126-UTR-H-paniculata_contig15831:2942..29461622929264.0532126-UTR-H-paniculata_contig15831:2942..2946Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15831 2943..2946 -
1691480792.953259-UTR-H-paniculata_contig15831:2942..29461691480792.953259-UTR-H-paniculata_contig15831:2942..2946Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15831 2943..2946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929264.005717-CDS-H-paniculata_contig15831:851..14421622929264.005717-CDS-H-paniculata_contig15831:851..1442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15831 852..1442 -
1691480792.9354868-CDS-H-paniculata_contig15831:851..14421691480792.9354868-CDS-H-paniculata_contig15831:851..1442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15831 852..1442 -
1622929264.0306568-CDS-H-paniculata_contig15831:2852..29421622929264.0306568-CDS-H-paniculata_contig15831:2852..2942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15831 2853..2942 -
1691480792.943604-CDS-H-paniculata_contig15831:2852..29421691480792.943604-CDS-H-paniculata_contig15831:2852..2942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15831 2853..2942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15831.3389.1

>prot_H-paniculata_contig15831.3389.1 ID=prot_H-paniculata_contig15831.3389.1|Name=mRNA_H-paniculata_contig15831.3389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MAERDSDGTGKAGVIAGDTAVEEGEELHLMVRFAHRFAVGEDPVMSQPTT
VNLSDLVPGYSLLFAEEISLTGGASLASRTQRLKWSTATVKPRCTGRDGS
SSSSSSSSSSISSGELGKVDLSEKNLSPKNARLHDGDNKGRSYTSPDVVR
LGAGRDAKGVRVREDATVGGAGASDGAGAGAGALGVSGSVLGAGEWNTNN
ERTADFVIAPMEIKTFRLKYVRRSAV*
back to top

mRNA from alignment at H-paniculata_contig15831:560..2946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15831.3389.1 ID=mRNA_H-paniculata_contig15831.3389.1|Name=mRNA_H-paniculata_contig15831.3389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2387bp|location=Sequence derived from alignment at H-paniculata_contig15831:560..2946- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAATGGCGGAGAGAGATAGTGATGGGACGGGGAAGGCAGGGGTTATCG
CGGGGGATACGGCGGTGGAGGAGGGAGAGGAGCTTCATCTTATGGTGAGC
GGGGATTTGTTGTCGTTGATGTTGATGTCGTTGCGTGTTCTGGTGAATAA
TACTCTGGTTTGTTGTTAGGGTTTGTACGAGAATAAAAGCGATCTATATC
TATATCTATATCTATACCTATATCTATATCTATATCTATATCTATATATT
GTCAATACGTGGTAATTCTTGCTTGATATCGGAGATGTAGGAAGCCCTCT
GTTGTCGGGGGGTGTTGCCACTTGTGCGCTATCTTATCTATAGCACCGTG
TATGTCAGGTCGCGTTTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GAAAAGAGAAAAAGTGTGGTCTAGTATAGATCACACTTTTGAGTACCATA
AGGATAACGTTAAGTTCGATGTATGCAACTGGTATCTTCTCGTCGCCTCC
ACTCACTCTTGTGGGATGTGCAGGTTATTGATGGGTAGATGTCAATATGA
AGAAACGTTTAGCTGCATGCACGTCAACGTTACCTTCTGGCTCTGCGTAC
GTGTTGGTTTTGTATTACCCTTTGTCAAGTCTGGTTTAGATATCTAGGAA
GCTGGTCTCGACTTTGTTTTGACTTCACAATACATACATTACTGTGTAGT
GCAGTGCAGGTATGGGTGTGCTGCTACTCACACATACGTGCCATCCAAAA
TCATGCTCTCTTTCATCCCTTACAGTGTTTGAAATTGGCTGATTGATGAT
GACTGTTGGCTAAAGACCCGCAGCATATACTATTATTGTGTACATGTTTG
TTGTGATAAAATGAAATGTGTACGATGTTTTTTCAAATCTTTACACAGTT
ATAAAAGCAGTGCTTTCAGTGGCCCGCCATGTAATGTAATGTCATGCTAT
GCCTATTTATGTTACACACCTGCTACCTCCCTAGGTTGGTTGTTTTATGG
ATTCGGTCACTCGGCTGTTCTGAAATTTGCACCCCCCCCGAACAAACACG
AATACTTGCAAATGATTTCCACGAATAACTCAAAAGTATTCGCCTGAGTT
TTCAGAATGAGCGGACACATAGAACAAAATACTCATCCGTGTTCATTCGG
TTTTTACGAGTATTATCAGCAGTCGTGGATGGTCCAGGGCACATAGAATA
CACGAGCTCATTGTGAAACTTGAGGCGAATACTTTTGTTTTTTTGTGAAT
ATCATTTGCAAGTATTCGTATTTTGTTTGGAGGGTAGGAAACTGTTAGCA
TAACTGGAATCTGATTGAGAGTTATAATCACGTTTTCTTGTTCCACATTT
TCTACTCGTTGCACCGTCATCACCCAATGTTCACGTCATATTTCCATGAT
GTAGATGTTGTCCTCCTGGCTACCCCACTGCCACCGCACTGCCACTGCTC
GGTTCCCTCGCCATTCCTTCCTCCCTCCCAAAACATGGAACTGGATCCTA
CTAGGTCCGGTTCGCACACCGGTTCGCGGTGGGAGAAGACCCGGTAATGT
CTCAACCTACCACGGTAAACCTATCGGATCTCGTGCCCGGATACTCGTTG
CTGTTCGCGGAGGAGATTTCTCTGACCGGCGGCGCTTCGCTCGCATCCCG
CACGCAGCGGCTCAAATGGTCCACAGCGACAGTCAAGCCGCGGTGTACTG
GTAGAGACGGCAGCAGCAGTAGCAGCAGCAGTAGCAGCAGTAGCATCAGC
AGTGGAGAATTGGGGAAGGTTGATTTGTCGGAGAAAAATTTGTCTCCGAA
GAACGCCAGATTGCATGATGGCGATAACAAAGGCAGATCATACACCAGCC
CCGACGTGGTGCGGTTGGGCGCGGGGCGGGATGCGAAGGGCGTGAGGGTT
CGGGAGGATGCCACTGTTGGTGGTGCTGGTGCTAGCGATGGTGCTGGTGC
TGGTGCTGGTGCACTTGGTGTGTCTGGTTCGGTACTTGGAGCGGGGGAAT
GGAATACGAACAACGAGAGGACGGCTGATTTTGTCATAGCGCCAATGGAG
ATAAAAACATTTAGGCTCAAGTACGTTCGGCGTTCTGCGGTGTAAAAGGG
GCGTTTTGGTTGCTTGAGTGGGAGTTTATTCTTGGAGTAAAGGTCTAATA
TTGCATACACTTGTACACAGTTTGGGTCGTTTGAGGTTCTTGCGTGGAAT
TTTCCTGTACATTTAAAAGAAAAGCACATACGTACATATATATATATAAA
TCAGTGAATAGGTGACCACTGGAGTATGGCTTGCGCTACGTTCCCAATCT
TGTGTATCCGTTTTTGATGTTGAGGAGGGGTCAGCAACGTCTGCCACAGG
CTGTGTGGAGTTTAACAAAGGCATAAACAACCTCAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15831:560..2946-

>mRNA_H-paniculata_contig15831.3389.1 ID=mRNA_H-paniculata_contig15831.3389.1|Name=mRNA_H-paniculata_contig15831.3389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig15831:560..2946- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAGAGAGATAGTGATGGGACGGGGAAGGCAGGGGTTATCGCGGG
GGATACGGCGGTGGAGGAGGGAGAGGAGCTTCATCTTATGATGGCGGAGA
GAGATAGTGATGGGACGGGGAAGGCAGGGGTTATCGCGGGGGATACGGCG
GTGGAGGAGGGAGAGGAGCTTCATCTTATGGTCCGGTTCGCACACCGGTT
CGCGGTGGGAGAAGACCCGGTAATGTCTCAACCTACCACGGTAAACCTAT
CGGATCTCGTGCCCGGATACTCGTTGCTGTTCGCGGAGGAGATTTCTCTG
ACCGGCGGCGCTTCGCTCGCATCCCGCACGCAGCGGCTCAAATGGTCCAC
AGCGACAGTCAAGCCGCGGTGTACTGGTAGAGACGGCAGCAGCAGTAGCA
GCAGCAGTAGCAGCAGTAGCATCAGCAGTGGAGAATTGGGGAAGGTTGAT
TTGTCGGAGAAAAATTTGTCTCCGAAGAACGCCAGATTGCATGATGGCGA
TAACAAAGGCAGATCATACACCAGCCCCGACGTGGTGCGGTTGGGCGCGG
GGCGGGATGCGAAGGGCGTGAGGGTTCGGGAGGATGCCACTGTTGGTGGT
GCTGGTGCTAGCGATGGTGCTGGTGCTGGTGCTGGTGCACTTGGTGTGTC
TGGTTCGGTACTTGGAGCGGGGGAATGGAATACGAACAACGAGAGGACGG
CTGATTTTGTCATAGCGCCAATGGAGATAAAAACATTTAGGCTCAAGTAC
GTTCGGCGTTCTGCGGTGTAAGTCCGGTTCGCACACCGGTTCGCGGTGGG
AGAAGACCCGGTAATGTCTCAACCTACCACGGTAAACCTATCGGATCTCG
TGCCCGGATACTCGTTGCTGTTCGCGGAGGAGATTTCTCTGACCGGCGGC
GCTTCGCTCGCATCCCGCACGCAGCGGCTCAAATGGTCCACAGCGACAGT
CAAGCCGCGGTGTACTGGTAGAGACGGCAGCAGCAGTAGCAGCAGCAGTA
GCAGCAGTAGCATCAGCAGTGGAGAATTGGGGAAGGTTGATTTGTCGGAG
AAAAATTTGTCTCCGAAGAACGCCAGATTGCATGATGGCGATAACAAAGG
CAGATCATACACCAGCCCCGACGTGGTGCGGTTGGGCGCGGGGCGGGATG
CGAAGGGCGTGAGGGTTCGGGAGGATGCCACTGTTGGTGGTGCTGGTGCT
AGCGATGGTGCTGGTGCTGGTGCTGGTGCACTTGGTGTGTCTGGTTCGGT
ACTTGGAGCGGGGGAATGGAATACGAACAACGAGAGGACGGCTGATTTTG
TCATAGCGCCAATGGAGATAAAAACATTTAGGCTCAAGTACGTTCGGCGT
TCTGCGGTGTAA
back to top