mRNA_H-paniculata_contig1583.3388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1583.3388.1 vs. uniprot
Match: D7G491_ECTSI (Similar to Dynein heavy chain 3, axonemal (Axonemal beta dynein heavy chain 3) (Ciliary dynein heavy chain 3), partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G491_ECTSI) HSP 1 Score: 897 bits (2318), Expect = 9.660e-290 Identity = 726/1939 (37.44%), Postives = 928/1939 (47.86%), Query Frame = 1
Query: 1 ILESCGKSLIESSAVSAPLDFLTSEAEYRKVWKVFTAWLCSAVSAKLRAYLPNFFSLSYRVFNLGICIPTLELDSRFLERYGLTQEQSLSSKSSLSPRAPHQVTFSKETLGKEAGLPPARATFALEGILCAAGKEAGRGRTLLVDCGVGVLAARGRVMKFTFVQGADSLEVVHKYTPREVAAPRIHGGRAGEARRGGIHAFGKCYIPYTSRGNKELADARTRETEYLLRAESMRNAGGT---PPDGVEGEEGMQ-DNGVIEAMRSWDPAGVPCKVSGSAGV----SMRPQRMSTQRDLRGGEMDAAKDEDGDSS-HAGYVAVILVRVK------ALPV--FFNHMKRLTNMAFDDAMMTTGAVLGSAQPPPPLIDIHARLRGSILS-SPRRPTPVIKAVGELADSEGTGDGSDVDG---------AALGWP---------LGLEPRGVERLGNHYSPAAQVLFLDRDRGCIAWRDYGQVG-----------------TGSR--TPRGNVLCR----------LSDESPYPPEGLLGRITE-APQGLPRALLSDI-NDCGPESATAERTGGDAPAIYS-----PAATGGNAKXXXXXXXXXXXXXXSSLP---------------------------------------------------LPLRSPNSQRRPTFACKRLVRDVSIAA----TIIPISSFASPRSNNAAG-------NDKEDEGG----------GDAGDSVVVHQDDVLLTPLSGDKYDKEIMSGFERWVALRLLLLLHQIVIRHQIISQQRPSSHALRYRYYIEHDPLLSQSVLTLQPGVVAGILRKGMEGLLAHSDN---------CNDSVSGCDRLGGLCDLKSSQNPSSCRETLWFEDSDSECS----------GSSHTRPNQRTQQTQPRGSAGAGGVPA--AVVGESEEDLESKDGDQFDANGPSPPPRLATAATIRGYSFAVGGAGLAGSRSGTQDLPGKLTAVNGGAGKT-RVTATTGAAAVGVACAWTPRRARASRPEL-------SLTEMEIPDVLRAGVSQCLDEACVAFCRSVRRAVLNYVLLDAGQRHRLAIPQIPTRFRSEGWXXXXXXGFRESPPEWRRRFCRAREALSGGQITGSPALLAAQALLVESRGVRLLKLPISAAARRVTRWPPLTPEEFRNSQLNRLAKTAGKVRRLLYPGLSEALT--WGLGNSAPRQ--------------DGHVRRYLLAVNVMTASVLRRLVEMALTELQAFFELYSDAAASDRQKGGVKVIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDRESAKSSPASFCPPAFKIFLEESPATPRMPSELTCEHSMATLREAVMDVVRGVVMCFQRVPRVVYDCADKAEDLSFSTRNSGRTSGDSGGDANEEKSPTSKVGNYRAQGVTLRVAAAQGPPSSRSAQYCTHVILFASLVTTNKEVPQQLLGPSKRISLYTDSEDESSDEGEEDDDSSCNTVEEFTKSFESFDEEHPATSGTGGRGCTERRGVYLAVLKPTEAVVIKTVKAISSCLRTGATAAADACKVYEPFCSLLKEA-----DKVKLRPDDVPEKELPHLAKAIHRYEATAAILRSAGNAAPIVIPGRLLVVDCEETSRKLLGIAEELSKGALQWVTLTLGRLTGDITKQARTAILKLGKRPRSTAEMAEAIEYLRSTRAQEQVELRQRQLWMGQLLDFIFKHGGLQHEIVVSVSGVHRVMVELATATEKAIKAIAEGQAQLQKAVEKARRRVEDEVESVQVRIAAFVEGGGRARDMSEKATAIVKDLEGLRDQAVQLGEEETKVDGFASGALVASTEKVLLQFKPYADVWTLAFSVGPFVTSTMRSFVNSLDPDQVTAEHSSMKSRLQDLYNVMSLKSQLEPARAAQDALRQLSALEKDIPVMKGLSNPRLKDRHWQKVTA 5235
I+ CG+SLIE SAVSAP+DFLTSEAEYR+VW+VF WLCSAVSAKLRA +P FFSLSYRVFNLGICIPTLE D FL RYG++QEQSLSSKSSLSPRAP QV FS+E LGK AGLP ARA++ALEG+LCA GKEAG G TLLVDCGVGVLAARGRV KFTFVQ LA AR RET LLR S+R PPDGVEGEEGM DNGV+ AMR+W+P + SAG S+ D+R K+ G + AG +A VR + LP+ F + + +A ++ L+D+HARLRGS+LS SP ++ A + S GD + AA P L LEP GVERLG++YSPAAQ+L+LD +RGC+AWR+ G GSR P L R +P G++ +T A QG P + + + G + G P + S PA GG XXX S P +P SP +R C V A T P SS + N +DE G G+ S+ + ++ + SG D+ G W A + + + +R + A RY +Y++ D L++SV LQP AGI+RK + GL CN S G DL+ S + ED+ SE G ++RP + G G +PA A G D F+ + P P TA Y AV G +S T + G V GG+ T RV T A A A A T +R RA P E+PD +AGV CL+E C AF S+RRAVLNYV+LDAGQR RL I +P F S+GW G ++SPPEW+RRF RAREAL+ GQITGSPAL+AAQALL + RG RLL+LP SAA + + W +T EEFR+SQL+ L++ A +VRRLLYPGLSEAL G+G+ R DGHVRRYL AVNVMTAS+LR +VE A+++LQ F E + SDR S LTC S+ L+EAVMDVVR VV+CF VPRVVYDC RT+GD P++ G + + + Q KR +T C V+ RG +RR KA S A AC++Y PF SLL+EA K V EK+L LA A+ RY++TAA+LR+ G+AAP+ + G ++VVDC++TS KLL +A +L KG LQ VT TL +LT +TKQAR+AIL+LGKRPRST EM EAIE LR+ RA+EQ++LRQ Q+WMGQLLDF+F+HGGL H+++++V+GVHRVM EL+TAT+KA KAIAEG+AQL F++ R R+MSE A +I K+L GL+ QAV +GEEE KVDG SG LVA EKV++ F+PYAD+W+L SVGPF+T+ MR+ V +L+P+++TAEH+S+K RL+ L +M KS P +AAQ++LR L+ALEKDIP++K L+NP LKDRHW +++A
Sbjct: 2 IMHKCGRSLIEPSAVSAPMDFLTSEAEYRRVWQVFKHWLCSAVSAKLRACVPRFFSLSYRVFNLGICIPTLEFDESFLNRYGISQEQSLSSKSSLSPRAPKQVEFSREALGKGAGLPSARASYALEGLLCAVGKEAGLGATLLVDCGVGVLAARGRVTKFTFVQ---------------------------------------------------LALARARETTSLLR--SLREVQADRFLPPDGVEGEEGMPTDNGVVAAMRAWNPGRSSASSASSAGTGVSGSLAFSGDGNDGDIRTKNGLLGKNATGAAKITAGEIAGSTVRARIGLGRMTLPLRGFRDRGRTPVGIATGESAAXXXXXXXXXXXXXXLMDVHARLRGSVLSASPSPMARLLDATTAPSPSSPNGDRGIANSVLPERKQSRAAAVEPGTRPTGHLSLWLEPTGVERLGSYYSPAAQLLYLDVNRGCLAWRENANTGGFTCNEGGSNTRGVGGGLGSRILAPATPKLARRDAARGQTSPTDSANPQVYVGMVANVTRVASQGGPNGVNATVVTGTGSSEKDGHKLGLRTPHMESECHNRPAYAGGGXXXXXPGVPSSSEARQMSRPHDSSHSSRNDGQEGRSETWMSSSPPDATPAKAGVQSPELPSDGNNNTVGPLVPESSPGRERTSDRNCPPRAGQVGALAGCEVTYPPRSSSPPVKRNQTPPAVLSKIRRRPDDETGQRDDDRLPCPGEGRGSMEGERAELWMGQRSGGNGDR---GG---WAASAGAVQAANPELEVSDAAGRRQAGFA-RYHHYLQCDSTLAESVTVLQPPWQAGIVRKVVHGLSGRGGGXXXXXXXXXCNTSGRHSGTPRGW-DLEKSNDE---------EDTSSESDNGGVGVRGIGGGRYSRPGCKDV-----GGTGTENIPAKDAQEGGXXXXXXXXXXDVFEVHVEGPAPVAKTAQHKVPY-LAVTSGGDQPPQSPTTNSGGGRGVVGGGSVFTSRVDGTPRATAFNRA-ANTAKRPRARTPRGVAGPGPGEARMPEVPDGWKAGVEACLEETCEAFRASIRRAVLNYVVLDAGQRDRLGISAVPPGFASQGWGWGKGRGIQKSPPEWQRRFVRAREALNMGQITGSPALVAAQALLAKCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRVRRLLYPGLSEALKAQLGVGSKGTRATTAELATRTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDLQIFLEDRCSSPNSDRG-------------------------------------------------------------------------STLTCRKSLRDLKEAVMDVVREVVLCFADVPRVVYDC---------------RTAGDQASGGYHLVDPSTPAGRFP------------------------------------EGIDDQAFHVGKR--RWTTQR-------------RCRQVD---------------------RGHRQRR------------------KASSE--------ARAACRIYRPFESLLQEAATALAPKTAAEATGVSEKDLSGLASALRRYKSTAAVLRTGGDAAPVELQGGIVVVDCQKTSEKLLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVEAIECLRTMRAEEQIKLRQEQIWMGQLLDFVFEHGGLHHDVIIAVTGVHRVMSELSTATDKAEKAIAEGKAQLXXXXXXXXXXXXXXXXXXXXXXXXFIDSDARPREMSENAASISKELAGLKAQAVDIGEEEAKVDGHTSGTLVALAEKVIVSFQPYADLWSLVGSVGPFITTIMRAPVTTLNPEEITAEHASIKQRLEALIKIMEAKSHANPTKAAQESLRLLAALEKDIPILKALTNPHLKDRHWWQISA 1677
BLAST of mRNA_H-paniculata_contig1583.3388.1 vs. uniprot
Match: A0A6H5L524_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L524_9PHAE) HSP 1 Score: 812 bits (2098), Expect = 3.500e-256 Identity = 727/2044 (35.57%), Postives = 954/2044 (46.67%), Query Frame = 1
Query: 1 ILESCGKSLIESSAVSAPLDFLTSEAEYRKVWKVFTAWLCSAVSAKLRAYLPNFFSLSYRVFNLGICIPTLELDSRFLER------YGLTQEQ--------------SLSSKSSLSPRAPHQVTFSKETLGKEAGLPPARATFALEGILCAAGKEAGRGRTLLVDCGVGVLAARGRVMKFTFVQGADSLEVVHKYTPREVAAPRIHGGRAGEARRGGIHAFGKCYIPYTSRGNKELADARTRETEYLLRAESMRNAGGT---PPDGVEGEEGMQ-DNGVIEAMRSWDPAGVPCKVSGSAGVSMRPQRMS--TQRDLRGGEMDAAKDEDGDSS-HAGYVAVILVRVK------ALPV--FFNHMKRLTNMAFDDAMMTTGAVLGSAQPPPPLIDIHARLRGSILS-SPRRPTPVIKAVGELADSEGTGDGSDVDG---------AALGWP---------LGLEPRGVERLGNHYSPAAQVLFLDRDRGCIAWR---------------DYGQVG--TGSR-----TPRGNVLCRLSDESPYPP-------EGLLGRITEA-----PQGLPRALLS-------DINDCGPESATAERTGGDAPAIYSPAATGGNAKXXXXXXXXXXXXXXSSLPLPLRSPNSQRRPTFACKRLVRDVSIAATIIPISSFASPRSNNAAG-------------NDKE-----DEGGGDAG-------------------------------DSVVVHQDDVLLTPLSGDKYDKEIMSGFERWVALR-----------LLLLLHQIVIRHQI--ISQQRPSSHA--------------LRYRYYIEHDPLLSQSVLTLQPGVVAGILRKGMEGLLA-----------HSDNCNDSVS-GCDRLGGLCDLKSSQNPSSCRETLWFEDSDSECSGSSHTRPNQRTQQTQPRGSAGAGGVPAAVVGESEEDLESK----DGDQFDAN--GPSPPPRLATAATIRGYSFAVGGAGLAGSRSGTQDLPGKLTAVNGGAGKTRVTATTGAAAVGVACAWTPRRARASRPELSLTEMEIPDVLRAGVSQCLDEACVAFCRSVRRAVLNYVLLDAGQRHRLAIPQIPTRFRSEGWXXXXXXGFRESPPEWRRRFCRAREALSGGQITGSPALLAAQALLVESRGVRLLKLPISAAARRVTRWPPLTPEEFRNSQLNRLAKTAGKVRRLLYPGLSEALT--WGLGNSAPRQ--------------DGHVRRYLLAVNVMTASVLRRLVEMALTELQAFFELYSDAAASDRQKGGVKVIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDRESAKSSPASFCPPAFKIFLEESPATPRMPSELTCEHSMATLREAVMDVVRGVVMCFQRVPRVVYDCADKAEDLSFSTRNSGRTSGDSGGDANEEKSPTSKVGNYRA--QGVTLRVAAAQG--------------PPSSRSAQYCTHVILFASLVTTNKE--------VPQQLLG---PSKRISLYTDSE----------DESSDEGEEDDDSSCNTVE------------------EFTKSFESFDEEHPATSGTGGRGCTER-----RGVYLAVLKPTEAVVIKTVKAISSCLRTGATAAADACKVYEPFCSLLKEA-----DKVKLRPDDVPEKELPHLAKAIHRYEATAAILRSAGNAAPIVIPGRLLVVDCEETSRKLLGIAEELSKGALQWVTLTLGRLTGDITKQARTAILKLGKRPRSTAEMAEAIEYLRSTRAQEQVELRQRQLWMGQLLDFIFKHGGLQHEIVVSVSGVHRVMVELATATEKAIKAIAEGQAQLQKAVEKARRRVEDEVESVQVRIAAFVEGGGRARDMSEKATAIVKDLEGLRDQAVQLGEEETKVDGFASGALVASTEKVLLQFKPYADVWTLAFSVGPFVTSTMRSFVNSLDPDQVTAEHSSMKSR-----------------------------LQDLYNVMSLKSQLEPARAAQDALRQLSALEKDIPVMKGLSNPRLKDRHWQKVTA 5235
I+ CG+SLIE SAVSAP+DFLTSEAEYR+VW+VF WLCSAVSAKLRA +P FFSLSYRVFNLGICIPT+E D FL R + + +EQ S+ + S S R +V FS+E LGK AGLPPARA++ALEG+LCA GKEAG G+TLLVDCGVGVLAARGRV KFTFVQ LA AR RET LLR S+R PPDGVEGEEGM DNGV+ AMR+W+P G S GVS + D+R KD G + AG + VR + LP+ F + + MA D+ L+D+HARLRGS+LS SP ++ A + S GD + AA P L LEP GVERLG++YSPAAQ+L+LD RGC+AWR D G VG GSR TP+ +S Y +G++ IT A P G+ +++ D ++ G + E + PA Y+ GG R+ + R D A + S +NN G +D+ + G AG D+ +DD L P G+ E W+ R + +H ++ + +R + A +RY +YI+ DP L++SV LQP AGI+RK + GL ++ C+ S G D + +S + +W G ++RP + + G VP + E +GD F+ + GPSP LA A + AV +S T + G V GGA A A TPR P + E+P +AGV L+E C +F S+RRAVLNYVLLDAGQR RL IP +P F SEGW G +SPPEWRRR+ RAREAL+ GQITGSPAL+AAQALL RG RLL+LP SAA + + W +T EEFR+SQL+ L++ A +VRRLLYPGLSEAL G+G++ R DGHVRRYL AVNVMTAS+LR +VE A+++LQAFF ++ AA XXXXXXX G DR + A +CPP FK+ +R VV+CF VPRVVYDC RT+GD +P++ G A + T AAA P S S H I + NK + +G PSKRISLY++ + D +SD+G+ED S C E T + ++ + SG GG+ TE L VL P+E +V VK I + LR ++ A AC+++ PF SLL+EA K + V EK+L LA + RY++TAA+LR+ G+AAP+ +PG ++VVDC++TS KLL +A +L KG LQ VT TL +LT +TKQAR+AIL+LGKRPRST EM EAIE LR+ R +EQV +++V+GVHRVM EL+TAT+KA KAIAEG+AQLQK F++ R R+MSE A +I K+L GL+ QAV +GEEE KVDG SGALVA EKV++ F+PYAD+W+L SVGPF+T+ MR+ V +L+P+++TAEH+S+K R L+ L +M +SQ P +AAQ++LR L+ALEKDIP++K L+NPRLKDRHW +++A
Sbjct: 2 IIYKCGRSLIEPSAVSAPMDFLTSEAEYRRVWQVFKNWLCSAVSAKLRACVPRFFSLSYRVFNLGICIPTMEFDESFLNRWAFDAHFSINREQESDELGGCLAFPTRSMVTASLTSEREETRVEFSREALGKGAGLPPARASYALEGLLCAVGKEAGLGKTLLVDCGVGVLAARGRVTKFTFVQ---------------------------------------------------LAQARARETTSLLR--SLREVQADRCLPPDGVEGEEGMPTDNGVVAAMRAWNP-GASSASSAGTGVSGSLALLGDGNDGDVRSKSGLLGKDATGAAKITAGEITGSTVRARIGLGRITLPLRGFRDRGRTPVGMATGDSAAXXXXXXXXXXXXX-LMDVHARLRGSVLSASPSPMARLLAATTAPSPSSPYGDRGIANSILPERKRSRAAAVEPGTRPTGHRALWLEPTGVERLGSYYSPAAQLLYLDVSRGCLAWRESANTGGFTCNDGGSDNGGVGGGLGSRILLPATPKLARRDAARGKSSYTDSANAQGYDGIVSSITRAASQAGPNGVNAKVVTRTGSSEKDGHELGLRTPHKESECHNRPA-YAGGGDGGCGPGVPSSSKACDMSRPHDSSHDSRNDGHEGRSETLMSSSPPDAIAAGAGVQPPELPSEGNNNTVGPLVTESLPGREKASDRSCPPRAGQEGALAGCEVAHPPRSPSPPVKRRQSPPAVLSKIRLRLDNGTDQRDDDRL-PCPGEGCGSMEGERVELWMGQRSDGNGDGGGWAVAGAVHAANPGLEVSDATGRRQAGFARCRGVIGSSVCLVCVRYHHYIQCDPTLAESVTVLQPPWQAGIVRKVIHGLSGRGXXXXXXXXXNTSGCHTGTSRGRDVEKSNDEEDTSSESDNAGAGVWG------IGGGRYSRPGGKGVE-----GTGTENVPTKDAQDGGEXXXXXXXXXEGDLFEVHVEGPSP---LAKTAQHKVPPLAVTSGRDHPPQSPTTNSSGGR-GVGGGASVFSSRVNRAADTAKRLRARTPRGVVGPGPG-EVRMPELPGGWKAGVEARLEETCESFRSSIRRAVLNYVLLDAGQRDRLGIPAVPPGFASEGWGWGKGRGIHKSPPEWRRRYVRAREALNMGQITGSPALVAAQALLATCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRVRRLLYPGLSEALKAQLGVGSNGTRATSAELATRAKPSPPDGHVRRYLAAVNVMTASILRGMVETAISDLQAFFRIH---AAVHANNXXXXXXXXXXXXXXNCSSDATGVDASMSKRPFLYLAGSGGGDRGRGE---ACYCPPIFKV-------------------------------IREVVLCFADVPRVVYDC---------------RTAGDQASGGYHLVNPSAPAGVRAAVCESDTCGGAAAGAGTAXXXXXXXXXXXPASGASDGNTDHSINLENGSNNNKTRKHTSTTISARSSIGVNAPSKRISLYSEPDSSPSDGLSSCDPTSDDGDEDSSSKCGDDSSGTDSDADSLGPLRGFRRELTIKLSTLEKGAGSHSGGGGK-LTEAIDSAGEPSKLTVLSPSEPMVENAVKEILAVLRKASSEARAACRIFRPFESLLQEAAVSLAPKTAVEAAGVSEKDLSGLASDLRRYKSTAAVLRTGGDAAPVELPGGIVVVDCQKTSEKLLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVEAIECLRTMRTEEQV--------------------------IIAVTGVHRVMGELSTATDKAEKAIAEGKAQLQKNXXXXXXXXXXXXXXXXXXXXXFIDSDARPREMSETAASISKELAGLKAQAVDIGEEEAKVDGHTSGALVALAEKVIVSFQPYADIWSLVGSVGPFITTVMRAPVTTLNPEEITAEHASIKQRWSKFSFLANTSPVKCVLFLLSNCSDPSFRLEALIKIMEARSQATPTKAAQESLRLLAALEKDIPIIKALTNPRLKDRHWWQISA 1893 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1583.3388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1583.3388.1 >prot_H-paniculata_contig1583.3388.1 ID=prot_H-paniculata_contig1583.3388.1|Name=mRNA_H-paniculata_contig1583.3388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1745bp ILESCGKSLIESSAVSAPLDFLTSEAEYRKVWKVFTAWLCSAVSAKLRAYback to top mRNA from alignment at H-paniculata_contig1583:1554..20005- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1583.3388.1 ID=mRNA_H-paniculata_contig1583.3388.1|Name=mRNA_H-paniculata_contig1583.3388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=18452bp|location=Sequence derived from alignment at H-paniculata_contig1583:1554..20005- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1583:1554..20005- >mRNA_H-paniculata_contig1583.3388.1 ID=mRNA_H-paniculata_contig1583.3388.1|Name=mRNA_H-paniculata_contig1583.3388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=10470bp|location=Sequence derived from alignment at H-paniculata_contig1583:1554..20005- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |