mRNA_H-paniculata_contig1582.3380.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1582.3380.1 vs. uniprot
Match: D8LK41_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK41_ECTSI) HSP 1 Score: 424 bits (1091), Expect = 3.070e-140 Identity = 240/387 (62.02%), Postives = 274/387 (70.80%), Query Frame = 1
Query: 193 NVDVMGLVLYSLFLLLVCWRVRPFLVGHESLSSTDCIKLGFHICLLGSALLELVHYAVALAKRGSVLSGYACHLVALWLSLVAFSLVIVLWSNTLTPPRRAAARPAVSGVSSTLG-----------KCCS-FRLSGTTKFVGAIDAIVAITTIVVLLTGAVPAYSRPYLILVVAHSVTLFLLASWLVLYGVRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAICFLIRVGVLSSALFVRSRHRAEEMNRLLFELLSKWISGLVPGVALLHIMCKTKRPGEDKNA-QHMRMNAVSDDQPLRQPLLASRGVGSLSPSVVDRQEQGFAGSKSHTGDGGNSRGGSSPLNSERAGLGEGGEQ-------DSFVYHVVRSQRERTETTI 1293
+ DV G+VLY+LF LVC R RPFL SLSSTD IKL FH+C+ SALLE+VHYA+ LA RGSVLSGYACHLV LWLSLV+FSLVIVLWSNTL PP +CC R+S KFV AIDAIVA+ T+VVL TG+VPAYSRPYLIL+V HSVTLFLLASWLVLYG+RLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCA CFL+RV VLSSALFVRSRHRAE+MNRLLFE+L++W+SGL+PGVALLHIMCKTK+PGED+ MR++ V++DQPL +PLL + G S+ ++ G AG G NSR G DSF Y +VRSQRERTETTI
Sbjct: 6 SADVCGIVLYTLFFGLVCIRTRPFLTDRRSLSSTDRIKLAFHVCINTSALLEIVHYAIELAFRGSVLSGYACHLVGLWLSLVSFSLVIVLWSNTLHPPXXXXXXXXXXXXXXXXXXXXXXXEPAGWRCCGKTRISIAAKFVCAIDAIVALATVVVLWTGSVPAYSRPYLILMVTHSVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLVRVAVLSSALFVRSRHRAEDMNRLLFEVLARWVSGLIPGVALLHIMCKTKKPGEDRPPPDQMRLSVVNEDQPLNEPLLPTHHGGGGYVSMAKKKPNGSAG----RGTSSNSRSGXXXXXXXXXXXXXXXXXXXXXXXXDSFAYQIVRSQRERTETTI 388 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1582.3380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1582.3380.1 >prot_H-paniculata_contig1582.3380.1 ID=prot_H-paniculata_contig1582.3380.1|Name=mRNA_H-paniculata_contig1582.3380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=371bp MWDNVDVMGLVLYSLFLLLVCWRVRPFLVGHESLSSTDCIKLGFHICLLGback to top mRNA from alignment at H-paniculata_contig1582:17530..23715- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1582.3380.1 ID=mRNA_H-paniculata_contig1582.3380.1|Name=mRNA_H-paniculata_contig1582.3380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6186bp|location=Sequence derived from alignment at H-paniculata_contig1582:17530..23715- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1582:17530..23715- >mRNA_H-paniculata_contig1582.3380.1 ID=mRNA_H-paniculata_contig1582.3380.1|Name=mRNA_H-paniculata_contig1582.3380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2226bp|location=Sequence derived from alignment at H-paniculata_contig1582:17530..23715- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |