mRNA_H-paniculata_contig15811.3378.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15811.3378.1
Unique NamemRNA_H-paniculata_contig15811.3378.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: D7FLH8_ECTSI (FAM184 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH8_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 4.860e-34
Identity = 70/80 (87.50%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:  124 KASDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNAEAQV 363
            KA+DVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQ+EMQDILSDAANKIK F+E+L +KQGQ++ EAQV
Sbjct:   72 KAADVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQQEMQDILSDAANKIKRFKEQLASKQGQLDMEAQV 151
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BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: A0A835ZEA9_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.980e-27
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:  127 ASDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNAEA 357
            A DVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEV  NHQKEMQDIL+DAA+KI+ F+E L +K+ + NA A
Sbjct:   12 AGDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVRANHQKEMQDILTDAASKIQRFKESLESKREEANAAA 88
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BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: A0A7S3UP41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UP41_HETAK)

HSP 1 Score: 103 bits (257), Expect = 2.090e-24
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:  124 KASDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNAEAQV 363
            KAS+VFPDLHHKMSKKIAQLTKVIYHLNTKNED Q+E++ +  NHQ E+Q IL DAA KI  F+++L  ++ QVN E Q+
Sbjct:   12 KASEVFPDLHHKMSKKIAQLTKVIYHLNTKNEDHQYEIDSLQKNHQAELQRILEDAATKINMFKDQLADRRSQVNNEVQI 91
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BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: A0A6H5KR93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR93_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.380e-24
Identity = 69/123 (56.10%), Postives = 82/123 (66.67%), Query Frame = 1 
Query:    7 MGGHLGGPTIGRAES----LRNSGSAQMMSSDSGGERGKIIMNKASDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNAEAQV 363
            MGGHLGGP+  R  +    L ++ +    ++ SGG        KA+DVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ               DILSDAANKIK F+E+L +KQGQ++ EAQV
Sbjct:    1 MGGHLGGPSRHRGPTPSGVLPSAATTPTEAATSGG-----TPMKAADVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQ---------------DILSDAANKIKRFKEKLASKQGQLDMEAQV 103
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BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: A0A482SQX4_9ARCH (FAM184 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQX4_9ARCH)

HSP 1 Score: 91.7 bits (226), Expect = 1.240e-21
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:  124 KASDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNA 351
            K  +VFPDLHHKMSKKIAQLTKVIYHLNTKNED   E+E +++NHQ E+Q+IL DAAN+I  F+E +  +Q  V++
Sbjct:    9 KTMEVFPDLHHKMSKKIAQLTKVIYHLNTKNEDHTLEMEVMSSNHQMEIQNILRDAANRINKFKEMVENRQQAVSS 84
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BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: A0A7R9UEV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEV8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.150e-19
Identity = 45/81 (55.56%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:  121 NKASDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNAEAQV 363
            N    VFPD+HHKMSKKIAQLTKVIYHLNTKNED + E++ +  +H+ +++ IL DAA KI  F+E+L  ++G+++AEA++
Sbjct:    5 NMLQPVFPDVHHKMSKKIAQLTKVIYHLNTKNEDHEAEMQAMAEHHRYDVERILKDAAKKIGRFKEQLEVRRGELDAEARL 85
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BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: A0A7S1XST5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XST5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.680e-18
Identity = 45/78 (57.69%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:  136 VFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNAEAQVQQ 369
            +FPD+HHKMSKKIAQLTKVIYHLNTKNED + E+  +  +H+ +++ IL DAA KI  F+++L T++G++NAEA+++Q
Sbjct:   23 MFPDIHHKMSKKIAQLTKVIYHLNTKNEDHEAEMAAMAEHHRFDVERILKDAAKKISRFKDQLETRRGEINAEARLEQ 100
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BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: UPI001CFF2F7B (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF2F7B)

HSP 1 Score: 78.2 bits (191), Expect = 2.000e-15
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   82 SSDSGGERGKIIMNKASDVFPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTK 333
            S +S G    +  NK ++ FPD HHKMSKKIAQLTKVIYHLNTKN+D +F+L  +   ++ E++DI+ D   K+  F+E++  K
Sbjct:    4 SKNSTGAVNNVSANKIANGFPDFHHKMSKKIAQLTKVIYHLNTKNDDHEFQLNSLADAYESEIEDIIRDTTAKLAMFREQIEKK 87
[Close]
BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: A0A7S1CCX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCX9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.150e-14
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  139 FPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNA 351
            FPDLHHKMSKKIAQLTKVIYHLNT+N+D   EL+ + + H+ E+  IL DAA KI  FQE L  ++  V A
Sbjct:   10 FPDLHHKMSKKIAQLTKVIYHLNTRNDDHDAELKALASQHESEIDGILKDAAAKISKFQEALGKQRDTVKA 80
[Close]
BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Match: A0A7S1G7I8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7I8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.230e-14
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  139 FPDLHHKMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIKHFQEELVTKQGQVNA 351
            FPDLHHKMSKKIAQLTKVIYHLNT+N+D   EL+ + + H+ E+  IL DAA KI  FQE L  ++  V A
Sbjct:   10 FPDLHHKMSKKIAQLTKVIYHLNTRNDDHDAELKALASQHESEIDGILKDAAAKISKFQEALGKQRDTVKA 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15811.3378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLH8_ECTSI4.860e-3487.50FAM184 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835ZEA9_9STRA1.980e-2779.22B30.2/SPRY domain-containing protein n=1 Tax=Tribo... [more]
A0A7S3UP41_HETAK2.090e-2466.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5KR93_9PHAE3.380e-2456.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SQX4_9ARCH1.240e-2163.16FAM184 domain-containing protein n=1 Tax=archaeon ... [more]
A0A7R9UEV8_9STRA1.150e-1955.56Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1XST5_9STRA2.680e-1857.69Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI001CFF2F7B2.000e-1548.81uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A7S1CCX9_9STRA3.150e-1460.56Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1G7I8_9STRA3.230e-1460.56Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15811contigH-paniculata_contig15811:519..1775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue5.4e-30
Seed eggNOG ortholog2880.D7FLH8
Preferred nameFAM184A
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Family with sequence similarity 184, A and B
EggNOG OGs28YSA@1,2R5KC@2759
Ec32 ortholog descriptionFAM184 family
Ec32 orthologEc-17_001130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size369
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15811.3378.1prot_H-paniculata_contig15811.3378.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15811 519..1769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.5491118-CDS-H-paniculata_contig15811:518..6591622929262.5491118-CDS-H-paniculata_contig15811:518..659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15811 519..659 -
1691480792.2526224-CDS-H-paniculata_contig15811:518..6591691480792.2526224-CDS-H-paniculata_contig15811:518..659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15811 519..659 -
1622929262.5646765-CDS-H-paniculata_contig15811:1547..17691622929262.5646765-CDS-H-paniculata_contig15811:1547..1769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15811 1548..1769 -
1691480792.2725863-CDS-H-paniculata_contig15811:1547..17691691480792.2725863-CDS-H-paniculata_contig15811:1547..1769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15811 1548..1769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.579809-UTR-H-paniculata_contig15811:1769..17751622929262.579809-UTR-H-paniculata_contig15811:1769..1775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15811 1770..1775 -
1691480792.281291-UTR-H-paniculata_contig15811:1769..17751691480792.281291-UTR-H-paniculata_contig15811:1769..1775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15811 1770..1775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15811.3378.1

>prot_H-paniculata_contig15811.3378.1 ID=prot_H-paniculata_contig15811.3378.1|Name=mRNA_H-paniculata_contig15811.3378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MGGHLGGPTIGRAESLRNSGSAQMMSSDSGGERGKIIMNKASDVFPDLHH
KMSKKIAQLTKVIYHLNTKNEDRQFELEEVNTNHQKEMQDILSDAANKIK
HFQEELVTKQGQVNAEAQVQQ
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mRNA from alignment at H-paniculata_contig15811:519..1775-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15811.3378.1 ID=mRNA_H-paniculata_contig15811.3378.1|Name=mRNA_H-paniculata_contig15811.3378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1257bp|location=Sequence derived from alignment at H-paniculata_contig15811:519..1775- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCCGATGGGCGGGCATCTCGGTGGCCCCACCATCGGTCGCGCAGAATC
CCTTCGAAATAGCGGAAGCGCGCAGATGATGAGCTCCGACTCAGGTGGGG
AAAGAGGGAAGATAATCATGAACAAGGCCAGCGATGTGTTCCCGGACTTG
CATCACAAGATGAGCAAGAAGATCGCGCAGCTTACGAAGGTCATCTATCA
TCTCAATACCAAGAACGAGGATCGACAGGTAAGCGCCGATCGATGTGATA
CACAACCAAAATATATCATGGGCGGCAAGCTGCAGTAGGAGATGTAACTA
GTGTCTCAAGACTACAGTATGATAATACGACCACCTACAGTCCGGAATTT
ACCGGGGTGTTATCCAGGCAAAGGAAAATACTCGGTATTGAGCCGTCATC
TCGGAAATCAATTTAGAGCACATGGCGGAAGAGTACCCAACTGTTACTGG
CGCATTTCGTGCTGTCGGGGCCTAAAATTGTCATTTGTGAAGAGCAATAT
AAACATGATATTAAACGATAGCTCTCGGGTAGCTCTGGATATAAGAGCAA
ATCAAATCAAAACGAGCTAGGGCTTTTCATGTAGATTGTAGTTTCCCCTG
GTTTTGACCTTCAAGGCAGGTGATCCAGAACATAGATCGAAGCCTTGGGT
CGTGGGAATAGCATGTCAGTCTTTATCTTTCCCGATACCATCATTCATCG
GCCGATTTTTCTAAACTTGCCGGACTAATCTGATTCGAAAACTGAAAACG
GCACCCTGTTTCCACGACCCAGGGCTTCGATTTTCGAATGGGTGTTTGGA
CTGAATTGCCTGTCTTGCAGATAGAAATCGGGGGAAACCAAAGTCCATAG
CTCGTTCTGATTTTTTCGTGACTCATGCTTATTACTACGAATATCATGAT
TTTAGTGGTACCCCGTTGCAGATCATGTTCTGTCTGACTCGATTAATTCA
AGTAGTATAGAGATCGTTATCCCTATCCTTGAAAGCGTTGTTGCCCTGCA
CCCTCGGTCCGCAAATAAATAAAAAAGTTTCAACGCAATCTATACGTGAA
CGTTCAATCCTTAGACGCTTGTTGCTTATTCGCCGTACGCCGTATCGGCG
CTCACCTCAACCATAGTTTGAGCTGGAAGAGGTGAACACAAATCATCAGA
AGGAGATGCAAGATATTTTATCCGATGCCGCCAACAAGATCAAGCATTTT
CAGGAGGAGCTTGTCACGAAACAAGGACAAGTGAACGCGGAAGCTCAGGT
ACAGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15811:519..1775-

>mRNA_H-paniculata_contig15811.3378.1 ID=mRNA_H-paniculata_contig15811.3378.1|Name=mRNA_H-paniculata_contig15811.3378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig15811:519..1775- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGGGCATCTCGGTGGCCCCACCATCGGTCGCGCAGAATCCCTTCG
AAATAGCGGAAGCGCGCAGATGATGAGCTCCGACTCAGGTGGGGAAAGAG
GGAAGATAATCATGAACAAGGCCAGCGATGTGTTCCCGGACTTGCATCAC
AAGATGAGCAAGAAGATCGCGCAGCTTACGAAGGTCATCTATCATCTCAA
TACCAAGAACGAGGATCGACAGATGGGCGGGCATCTCGGTGGCCCCACCA
TCGGTCGCGCAGAATCCCTTCGAAATAGCGGAAGCGCGCAGATGATGAGC
TCCGACTCAGGTGGGGAAAGAGGGAAGATAATCATGAACAAGGCCAGCGA
TGTGTTCCCGGACTTGCATCACAAGATGAGCAAGAAGATCGCGCAGCTTA
CGAAGGTCATCTATCATCTCAATACCAAGAACGAGGATCGACAGTTTGAG
CTGGAAGAGGTGAACACAAATCATCAGAAGGAGATGCAAGATATTTTATC
CGATGCCGCCAACAAGATCAAGCATTTTCAGGAGGAGCTTGTCACGAAAC
AAGGACAAGTGAACGCGGAAGCTCAGGTACAGCAGTTTGAGCTGGAAGAG
GTGAACACAAATCATCAGAAGGAGATGCAAGATATTTTATCCGATGCCGC
CAACAAGATCAAGCATTTTCAGGAGGAGCTTGTCACGAAACAAGGACAAG
TGAACGCGGAAGCTCAGGTACAGCAG
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