mRNA_H-paniculata_contig1581.3377.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1581.3377.1
Unique NamemRNA_H-paniculata_contig1581.3377.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: D8LQ33_ECTSI (Endo-1,3-beta-glucanase N-terminal, family GH16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ33_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.310e-15
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 2 
Query:  281 GQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            G I +  VLVWEDNFDG+SL+E VW+LNTGNGC++G  LCGWGN
Sbjct:   14 GMIPAERVLVWEDNFDGNSLDEAVWALNTGNGCDQGDGLCGWGN 57
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 7.310e-14
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2 
Query:  281 GQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            G I +  VLVWEDNFDGDSL+E VW+LNTGNGC++G  LCGWGN
Sbjct:   14 GMIPAERVLVWEDNFDGDSLDEAVWALNTGNGCDQGDGLCGWGN 57
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: UPI00131BA2CD (glycoside hydrolase family 16 protein n=1 Tax=Cellulophaga sp. L1A9 TaxID=2686362 RepID=UPI00131BA2CD)

HSP 1 Score: 62.4 bits (150), Expect = 6.200e-9
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:  242 LIFVVTSSWSCVNGQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            LIF++ S  SC N +      LVWE+NF+G++LNE+VW+   G+GC   P+LCGWGN
Sbjct:    9 LIFILMSGLSCANKK-----GLVWEENFNGNTLNESVWNYELGDGC---PELCGWGN 57
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: A0A5B9FVX9_9FLAO (Glycoside hydrolase family 16 protein n=2 Tax=Flavobacterium TaxID=237 RepID=A0A5B9FVX9_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 8.870e-9
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 2 
Query:  239 FLIFVVTSSWSCVNGQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            FL  +  +  SC   +  +   L+WE+NFDG +LNETVW+   G+GC   P++CGWGN
Sbjct:    6 FLFLITAAFVSCSESKKENERELLWEENFDGTALNETVWNYELGDGC---PNICGWGN 60
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: A0A3M0GBX8_9FLAO (Glycoside hydrolase family 16 protein n=1 Tax=Dokdonia sinensis TaxID=2479847 RepID=A0A3M0GBX8_9FLAO)

HSP 1 Score: 60.1 bits (144), Expect = 4.750e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  230 VVGFLIFVVTSSWSCVNGQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            V GFL+F+V +S      +  S + L+W D FDG +LNE+ W+   G+GC   PDLCGWGN
Sbjct:   11 VSGFLMFLVLTS---CKQERQSESTLIWSDEFDGTTLNESNWNYKLGDGC---PDLCGWGN 65
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: A0A1K2IHY7_9FLAO (Glycosyl hydrolases family 16 n=1 Tax=Flaviramulus basaltis TaxID=369401 RepID=A0A1K2IHY7_9FLAO)

HSP 1 Score: 59.7 bits (143), Expect = 5.910e-8
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 2 
Query:  242 LIFVVTSSWSCVN-GQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            ++ + T  +SC N GQ      LVWE+NFDG+SLNE  W+   GNGC   P+LCGWGN
Sbjct:    7 ILILGTLVFSCKNEGQ-----TLVWEENFDGNSLNEETWNFELGNGC---PNLCGWGN 56
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: A0A0D7WC55_9FLAO (Laminarinase n=3 Tax=Tamlana TaxID=393005 RepID=A0A0D7WC55_9FLAO)

HSP 1 Score: 59.3 bits (142), Expect = 8.410e-8
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 2 
Query:  242 LIFVVTSSWSCVNGQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            L+ V+  S     GQ    T L+WE+NFDG++LNE+VW+   GNGC   P++CGWGN
Sbjct:    5 LVIVLFLSIFSYKGQ---DTELLWEENFDGNTLNESVWNFELGNGC---PNICGWGN 55
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: A0A1I2M201_9FLAO (Glycosyl hydrolases family 16 n=6 Tax=Salegentibacter TaxID=143222 RepID=A0A1I2M201_9FLAO)

HSP 1 Score: 58.5 bits (140), Expect = 1.530e-7
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 2 
Query:  251 VVTSSWSCVNGQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            ++ S+  C   Q+ S+  L+WE++F+GDSLN   WS  TG+GC   PDLCGWGN
Sbjct:    6 IILSAVLCAGLQV-SAQELIWEEDFEGDSLNMENWSYETGDGC---PDLCGWGN 55
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: A0A0Q9Z4K3_9FLAO (Laminarinase n=7 Tax=Salegentibacter TaxID=143222 RepID=A0A0Q9Z4K3_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 2.910e-7
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:  293 SSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            S+  L+WE+NF+GDSLN   WS  TG+GC   PDLCGWGN
Sbjct:   19 SAQELIWEENFEGDSLNMENWSYETGDGC---PDLCGWGN 55
[Close]
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Match: A0A1W2AN13_9FLAO (Glycosyl hydrolases family 16 n=1 Tax=Cellulophaga tyrosinoxydans TaxID=504486 RepID=A0A1W2AN13_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-7
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 2 
Query:  230 VVGFLIFVVTSSWSCVNGQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGN 412
            V  F IF++     CV  +  S + L+WEDNFDG +LNE  W+   G+GC   P+LCGWGN
Sbjct:    7 VKAFTIFLI-----CVGCK--SKSTLIWEDNFDGTTLNEKYWNFELGDGC---PNLCGWGN 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1581.3377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ33_ECTSI2.310e-1570.45Endo-1,3-beta-glucanase N-terminal, family GH16 n=... [more]
A0A6H5KV09_9PHAE7.310e-1472.73GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
UPI00131BA2CD6.200e-950.88glycoside hydrolase family 16 protein n=1 Tax=Cell... [more]
A0A5B9FVX9_9FLAO8.870e-944.83Glycoside hydrolase family 16 protein n=2 Tax=Flav... [more]
A0A3M0GBX8_9FLAO4.750e-847.54Glycoside hydrolase family 16 protein n=1 Tax=Dokd... [more]
A0A1K2IHY7_9FLAO5.910e-851.72Glycosyl hydrolases family 16 n=1 Tax=Flaviramulus... [more]
A0A0D7WC55_9FLAO8.410e-849.12Laminarinase n=3 Tax=Tamlana TaxID=393005 RepID=A0... [more]
A0A1I2M201_9FLAO1.530e-750.00Glycosyl hydrolases family 16 n=6 Tax=Salegentibac... [more]
A0A0Q9Z4K3_9FLAO2.910e-762.50Laminarinase n=7 Tax=Salegentibacter TaxID=143222 ... [more]
A0A1W2AN13_9FLAO2.980e-747.54Glycosyl hydrolases family 16 n=1 Tax=Cellulophaga... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1581contigH-paniculata_contig1581:19654..20318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size416
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1581.3377.1prot_H-paniculata_contig1581.3377.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1581 19772..20318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.4775817-UTR-H-paniculata_contig1581:19653..197711622929262.4775817-UTR-H-paniculata_contig1581:19653..19771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1581 19654..19771 +
1691480792.217838-UTR-H-paniculata_contig1581:19653..197711691480792.217838-UTR-H-paniculata_contig1581:19653..19771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1581 19654..19771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.4927583-CDS-H-paniculata_contig1581:19771..200401622929262.4927583-CDS-H-paniculata_contig1581:19771..20040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 19772..20040 +
1691480792.227831-CDS-H-paniculata_contig1581:19771..200401691480792.227831-CDS-H-paniculata_contig1581:19771..20040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 19772..20040 +
1622929262.5116267-CDS-H-paniculata_contig1581:20290..203181622929262.5116267-CDS-H-paniculata_contig1581:20290..20318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 20291..20318 +
1691480792.2373502-CDS-H-paniculata_contig1581:20290..203181691480792.2373502-CDS-H-paniculata_contig1581:20290..20318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 20291..20318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1581.3377.1

>prot_H-paniculata_contig1581.3377.1 ID=prot_H-paniculata_contig1581.3377.1|Name=mRNA_H-paniculata_contig1581.3377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MRKSAVTGGDRRAEHARHRGTHVRNRGLCGGASLWGGVVGFLIFVVTSSW
SCVNGQIHSSTVLVWEDNFDGDSLNETVWSLNTGNGCEEGPDLCGWGNY
back to top

mRNA from alignment at H-paniculata_contig1581:19654..20318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1581.3377.1 ID=mRNA_H-paniculata_contig1581.3377.1|Name=mRNA_H-paniculata_contig1581.3377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=665bp|location=Sequence derived from alignment at H-paniculata_contig1581:19654..20318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCTCGTTCTTGAGCAGCTGTCAGGAGGATGAGTGTGGCTAAGTAGGG
TGAGTAGTTGCATTACACTGTGCTCAACCTACATGGTACAGTGATTGTGG
TTAATAAGCCCAGTCGTCATGAGAAAAAGCGCCGTTACAGGTGGAGACAG
GCGAGCTGAACATGCGAGGCACAGAGGAACGCACGTTCGAAATCGCGGTC
TGTGCGGCGGCGCATCATTGTGGGGAGGTGTGGTGGGTTTCCTGATTTTT
GTAGTCACCTCATCGTGGTCTTGTGTTAACGGGCAAATTCACTCGTCGAC
AGTGCTTGTTTGGGAGGACAACTTTGATGGCGACAGCTTGAACGAGACGG
TGTGGAGTTTGAACACGGGAAATGGATGCGAGGAAGGGTAAGTCGGTGCT
AGTGCTAGCTTACTAAGCCCGATGTTGCCAACAAATATTTGGAAAGCAAC
AACAAGCTAAATATGTTCCGGATTGTCTACCTGTACGTTCTAGTGACCAT
AATGATGAAGCAAGATAGTATCTGTGAGGATGTTTTCTTGTCTCATGTCT
TGTGTGCCTAGAGAGCGCGAACGACTACTTATCATACTGTGTGTTTGTCG
TTCTGCGTTCGGCTGCGTGCTATATCATGCCACTCAGGCCTGACCTATGC
GGCTGGGGTAACTAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1581:19654..20318+

>mRNA_H-paniculata_contig1581.3377.1 ID=mRNA_H-paniculata_contig1581.3377.1|Name=mRNA_H-paniculata_contig1581.3377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig1581:19654..20318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAAAAGCGCCGTTACAGGTGGAGACAGGCGAGCTGAACATGCGAG
GCACAGAGGAACGCACGTTCGAAATCGCGGTCTGTGCGGCGGCGCATCAT
TGTGGGGAGGTGTGGTGGGTTTCCTGATTTTTGTAGTCACCTCATCGTGG
TCTTGTGTTAACGGGCAAATTCACTCGTCGACAGTGCTTGTTTGGGAGGA
CAACTTTGATGGCGACAGCTTGAACGAGACGGTGTGGAGTTTGAACACGG
GAAATGGATGCGAGGAAGGATGAGAAAAAGCGCCGTTACAGGTGGAGACA
GGCGAGCTGAACATGCGAGGCACAGAGGAACGCACGTTCGAAATCGCGGT
CTGTGCGGCGGCGCATCATTGTGGGGAGGTGTGGTGGGTTTCCTGATTTT
TGTAGTCACCTCATCGTGGTCTTGTGTTAACGGGCAAATTCACTCGTCGA
CAGTGCTTGTTTGGGAGGACAACTTTGATGGCGACAGCTTGAACGAGACG
GTGTGGAGTTTGAACACGGGAAATGGATGCGAGGAAGGGCCTGACCTATG
CGGCTGGGGTAACTACGCCTGACCTATGCGGCTGGGGTAACTAC
back to top